Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Forward (+)

26687202 .. 26688384

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGCCGGTGCGGCTCTCTTGGGCTCTATGCCCCAAATGCTTTGCCATCTCTCTCCTTGAAGCCACGCAGTGTCAAATCTCCTTTCTGTATTACATCTCACACCAAACCCAACGACACTCTTCTTCATAATGTTAACAAGATGAGAGCAAAGGCCTGTGATATACTTGGAGCAAAGAAGACAATCTTGGCAGCTCAACTCGGGGCAGTTCTTGCCACGATTGACCATCCAGCCTTAGCAATAACAGGAGTTAACAACCAGCAGGAATTGAGCAGTGTTGTGCTCGATATCGGGATCATATCCGTTTGGTACTTCCTAGTAATGCCACCAATCATCATGAACTGGCTAAGAGTAAGATGGTACAGAAGGAAGTTCTTCGAGATGTATTTACAGTTCATGTTCGTCTTCATGTTCTTCCCCGGGCTACTGTTATGGGCACCATTTCTCAACTTCAGGAAGTTCCCAAGAGATCCTAATATGAAGAATCCTTGGGACAAACCAACAGACCCAGACTCTATAAAGAACGTTTACCTCAAATACCCATATGCGACGCCAGAAGATTACGATCTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

191

Amino Acids

21.96

Weight (kDa)

9.47

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhL	PF10716	84 - 157	6e-33	NADH dehydrogenase transmembrane subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	436
AciI	CCGC	1 cut(s)	12
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	2 cut(s)	302, 464
AcuI	CTGAAG	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	311, 362
AgsI	TTSAA	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	302, 464
Ama87I	CYCGRG	2 cut(s)	200, 419
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	374
AsuC2I	CCSGG	2 cut(s)	420, 421
AvaI	CYCGRG	2 cut(s)	200, 419
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	2 cut(s)	185, 397
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	3 cut(s)	55, 234, 351
BcnI	CCSGG	2 cut(s)	420, 421
BfaI	CTAG	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	12
BisI	GCNGC	2 cut(s)	13, 192
BlsI	GCNGC	2 cut(s)	14, 193
Bme1390I	CCNGG	2 cut(s)	420, 421
BmeT110I	CYCGRG	2 cut(s)	200, 419
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	2 cut(s)	420, 421
BpiI	GAAGAC	2 cut(s)	185, 397
Bpu10I	CCTNAGC	1 cut(s)	235
BpuMI	CCSGG	2 cut(s)	420, 421
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	418, 419, 488
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	418, 419, 488
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	2 cut(s)	200, 419
BsiSI	CCGG	2 cut(s)	7, 420
BslFI	GGGAC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	200, 419
Bsp1286I	GDGCHC	3 cut(s)	27, 285, 439
Bsp143I	GATC	3 cut(s)	294, 469, 565
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	302, 464
BspT107I	GGYRCC	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	418, 419, 488
BssMI	GATC	3 cut(s)	294, 469, 565
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	488
Bst4CI	ACNGT	2 cut(s)	393, 429
Bst6I	CTCTTC	1 cut(s)	126
BstACI	GRCGYC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	235, 347
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	297, 472, 568
BstMBI	GATC	3 cut(s)	294, 469, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 38, 212
BstSCI	CCNGG	2 cut(s)	418, 419
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	2 cut(s)	185, 397
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	2 cut(s)	76, 280
BtsIMutI	CAGTG	2 cut(s)	76, 280
CciI	TCATGA	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	6
Cfr9I	CCCGGG	1 cut(s)	419
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	2 cut(s)	310, 361
CviAII	CATG	3 cut(s)	337, 397, 409
CviJI	RGCY	9 cut(s)	6, 15, 25, 64, 155, 194, 233, 346, 424
CviKI_1	RGCY	9 cut(s)	6, 15, 25, 64, 155, 194, 233, 346, 424
CviQI	GTAC	2 cut(s)	310, 361
DdeI	CTNAG	2 cut(s)	235, 347
DpnI	GATC	3 cut(s)	296, 471, 567
DpnII	GATC	3 cut(s)	294, 469, 565
DraIII	CACNNNGTG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	488
Eco147I	AGGCCT	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	27
Eco32I	GATATC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	436
Eco88I	CYCGRG	2 cut(s)	200, 419
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	3 cut(s)	340, 400, 412
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	3 cut(s)	336, 396, 408
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	13, 192
FokI	GGATG	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	2 cut(s)	13, 192
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	2 cut(s)	13, 192
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	7, 420
HgaI	GACGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	3 cut(s)	340, 400, 412
HincII	GTYRAC	2 cut(s)	136, 253
HindII	GTYRAC	2 cut(s)	136, 253
HinfI	GANTC	2 cut(s)	484, 512
HpaI	GTTAAC	2 cut(s)	136, 253
HpaII	CCGG	2 cut(s)	7, 420
Hpy166II	GTNNAC	3 cut(s)	136, 253, 529
Hpy188III	TCNNGA	5 cut(s)	292, 337, 379, 454, 569
Hpy8I	GTNNAC	3 cut(s)	136, 253, 529
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	2 cut(s)	393, 429
HpyCH4IV	ACGT	1 cut(s)	525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 38, 212
HpyF3I	CTNAG	2 cut(s)	235, 347
HpySE526I	ACGT	1 cut(s)	525
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	3 cut(s)	340, 400, 412
KspAI	GTTAAC	2 cut(s)	136, 253
Kzo9I	GATC	3 cut(s)	294, 469, 565
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	525
MalI	GATC	3 cut(s)	296, 471, 567
MboI	GATC	3 cut(s)	294, 469, 565
MboII	GAAGA	8 cut(s)	113, 116, 190, 367, 397, 406, 493, 569
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	27, 285, 439
MluCI	AATT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	1 cut(s)	542
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	3 cut(s)	135, 252, 574
MspI	CCGG	2 cut(s)	7, 420
MspR9I	CCNGG	2 cut(s)	420, 421
MwoI	GCNNNNNNNGC	3 cut(s)	12, 38, 212
NciI	CCSGG	2 cut(s)	420, 421
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	3 cut(s)	294, 469, 565
NlaIII	CATG	3 cut(s)	340, 400, 412
NlaIV	GGNNCC	1 cut(s)	438
PagI	TCATGA	1 cut(s)	336
PceI	AGGCCT	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	14, 193
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp1406I	AACGTT	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	438
PsrI	GAACNNNNNNTAC	2 cut(s)	377, 409
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	2 cut(s)	311, 362
RsaNI	GTAC	2 cut(s)	310, 361
SaqAI	TTAA	3 cut(s)	135, 252, 574
SatI	GCNGC	2 cut(s)	13, 192
Sau3AI	GATC	3 cut(s)	294, 469, 565
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	420, 421
SduI	GDGCHC	3 cut(s)	27, 285, 439
SetI	ASST	3 cut(s)	196, 528, 534
SmaI	CCCGGG	1 cut(s)	421
Sse9I	AATT	1 cut(s)	266
SseBI	AGGCCT	1 cut(s)	155
SsiI	CCGC	1 cut(s)	12
SspMI	CTAG	1 cut(s)	317
StuI	AGGCCT	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	418, 419
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	393, 429
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	3 cut(s)	285, 378, 570
TasI	AATT	1 cut(s)	266
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	3 cut(s)	135, 252, 574
Tru9I	TTAA	3 cut(s)	135, 252, 574
TscAI	CASTG	2 cut(s)	76, 280
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	5 cut(s)	116, 353, 385, 397, 494
TspGWI	ACGGA	1 cut(s)	292
TspMI	CCCGGG	1 cut(s)	419
TspRI	CASTG	2 cut(s)	76, 280
XmaI	CCCGGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.