Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Forward (+)

32051202 .. 32052217

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGCTGCTCCTTCACCTCCCAAATCCCACAGGCTCTGCCTTCCCTCAACCGCCCTCGCCGTACAGCTTCGTCCACAATCAATCTTAGTCTCAGTCACTCCCACCATGCCAAACCTCAAAAGGTATACCCAAGCATTGTTCATAACCGCCTAAAGAAAATTGGGTCAGCAATTCAAGTTGGAGCAGCTTTGGCCATTATTGAGCTGCCTGCACTTGCTCATGAGACTGGTATGAACTATGAGGAAGATTTATCATGGACTTTGATACAATCCGGAATCGTAGGCACCTGGTACTTCCTGCTCATGCCGCCGATCATCATGAACTGGCTTCGGATTAGGTGGTATAAGCGAAATCTCCTAGAGATGTATTTTCAGTTCATGTTCGTCTTCCTCTTCTTTCCTGGCATACTCCTTTGGGCACCATTTCTCAACTTCAGGAAGTTCCCTAGGGATCCAAACATGAAGTATCCTTGGTCCAAGCCAGAAGATCCCGATCTCGTTAAAGCCGGGTTCATGAAGTACCCTTATGCCGAACCTGAAGATTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

184

Amino Acids

21.33

Weight (kDa)

9.46

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhL	PF10716	78 - 151	9e-31	NADH dehydrogenase transmembrane subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	284, 418
AccI	GTMKAC	1 cut(s)	126
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	3 cut(s)	52, 148, 308
AclWI	GGATC	3 cut(s)	446, 459, 482
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	418
AfaI	GTAC	3 cut(s)	64, 293, 521
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	287, 400
AluBI	AGCT	4 cut(s)	6, 68, 188, 205
AluI	AGCT	4 cut(s)	6, 68, 188, 205
Alw26I	GTCTC	2 cut(s)	95, 218
AlwI	GGATC	3 cut(s)	446, 459, 482
AlwNI	CAGNNNCTG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	6, 185, 205
AspA2I	CCTAGG	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	474
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	474
AvrII	CCTAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	451
BanI	GGYRCC	2 cut(s)	284, 418
BbsI	GAAGAC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	192, 197
BceAI	ACGGC	1 cut(s)	45
BciT130I	CCWGG	2 cut(s)	289, 402
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	95, 218
BfaI	CTAG	2 cut(s)	359, 447
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	4 cut(s)	7, 186, 206, 308
BlnI	CCTAGG	1 cut(s)	446
BlsI	GCNGC	4 cut(s)	8, 187, 207, 309
Bme1390I	CCNGG	3 cut(s)	289, 402, 508
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	3 cut(s)	286, 420, 453
BmrFI	CCNGG	3 cut(s)	289, 402, 508
BpiI	GAAGAC	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	446, 470
BsaWI	WCCGGW	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	232, 329
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	289, 402
BseDI	CCNNGG	2 cut(s)	446, 470
BseJI	GATNNNNATC	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	2 cut(s)	232, 329
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	192, 197
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	2 cut(s)	284, 418
BsiSI	CCGG	2 cut(s)	273, 507
BsmAI	GTCTC	2 cut(s)	95, 218
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	312, 451, 487, 493
BspACI	CCGC	3 cut(s)	52, 148, 308
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	105
BspEI	TCCGGA	1 cut(s)	272
BspHI	TCATGA	4 cut(s)	220, 318, 513, 548
BspLI	GGNNCC	3 cut(s)	286, 420, 453
BspPI	GGATC	3 cut(s)	446, 459, 482
BspT107I	GGYRCC	2 cut(s)	284, 418
BsrI	ACTGG	2 cut(s)	232, 329
BssECI	CCNNGG	2 cut(s)	446, 470
BssMI	GATC	4 cut(s)	312, 451, 487, 493
BssNAI	GTATAC	1 cut(s)	127
BssT1I	CCWWGG	2 cut(s)	446, 470
Bst1107I	GTATAC	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	289, 402
Bst6I	CTCTTC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	86, 92
BstKTI	GATC	4 cut(s)	315, 454, 490, 496
BstMAI	GTCTC	2 cut(s)	95, 218
BstMBI	GATC	4 cut(s)	312, 451, 487, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 307
BstNI	CCWGG	2 cut(s)	289, 402
BstSCI	CCNGG	3 cut(s)	287, 400, 506
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	192, 197
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	2 cut(s)	451, 487
BstYI	RGATCY	2 cut(s)	451, 487
BstZ17I	GTATAC	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	37
CciI	TCATGA	4 cut(s)	220, 318, 513, 548
Cfr13I	GGNCC	1 cut(s)	474
CsiI	ACCWGGT	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	63, 292, 520
CviAII	CATG	9 cut(s)	107, 221, 255, 304, 319, 379, 460, 514, 549
CviJI	RGCY	9 cut(s)	6, 35, 68, 188, 194, 205, 328, 481, 506
CviKI_1	RGCY	9 cut(s)	6, 35, 68, 188, 194, 205, 328, 481, 506
CviQI	GTAC	3 cut(s)	63, 292, 520
DdeI	CTNAG	2 cut(s)	86, 92
DpnI	GATC	4 cut(s)	314, 453, 489, 495
DpnII	GATC	4 cut(s)	312, 451, 487, 493
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	2 cut(s)	446, 470
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	418
EcoRII	CCWGG	2 cut(s)	287, 400
EcoT14I	CCWWGG	2 cut(s)	446, 470
ErhI	CCWWGG	2 cut(s)	446, 470
FaeI	CATG	9 cut(s)	110, 224, 258, 307, 322, 382, 463, 517, 552
FatI	CATG	9 cut(s)	106, 220, 254, 303, 318, 378, 459, 513, 548
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	7, 186, 206, 308
Fsp4HI	GCNGC	4 cut(s)	7, 186, 206, 308
FspBI	CTAG	2 cut(s)	359, 447
GluI	GCNGC	4 cut(s)	7, 186, 206, 308
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	273, 507
Hin1II	CATG	9 cut(s)	110, 224, 258, 307, 322, 382, 463, 517, 552
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	273, 507
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	75, 127
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	7 cut(s)	221, 273, 319, 436, 491, 514, 549
Hpy8I	GTNNAC	2 cut(s)	75, 127
HpyAV	CCTTC	2 cut(s)	22, 51
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 307
HpyF3I	CTNAG	2 cut(s)	86, 92
Hsp92II	CATG	9 cut(s)	110, 224, 258, 307, 322, 382, 463, 517, 552
Kpn2I	TCCGGA	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	312, 451, 487, 493
LmnI	GCTCC	2 cut(s)	14, 182
Lsp1109I	GCAGC	2 cut(s)	192, 197
MabI	ACCWGGT	1 cut(s)	287
MaeI	CTAG	2 cut(s)	359, 447
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	4 cut(s)	314, 453, 489, 495
MboI	GATC	4 cut(s)	312, 451, 487, 493
MboII	GAAGA	5 cut(s)	257, 379, 385, 497, 551
MflI	RGATCY	2 cut(s)	451, 487
MhlI	GDGCHC	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	159, 171
MluNI	TGGCCA	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	6 cut(s)	28, 56, 66, 126, 235, 401
Mox20I	TGGCCA	1 cut(s)	194
MroI	TCCGGA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	2 cut(s)	273, 507
MspR9I	CCNGG	3 cut(s)	289, 402, 508
MvaI	CCWGG	2 cut(s)	289, 402
MwoI	GCNNNNNNNGC	2 cut(s)	191, 307
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	4 cut(s)	312, 451, 487, 493
NlaIII	CATG	9 cut(s)	110, 224, 258, 307, 322, 382, 463, 517, 552
NlaIV	GGNNCC	3 cut(s)	286, 420, 453
NmuCI	GTSAC	1 cut(s)	95
PagI	TCATGA	4 cut(s)	220, 318, 513, 548
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	8, 187, 207, 309
Psp6I	CCWGG	2 cut(s)	287, 400
PspGI	CCWGG	2 cut(s)	287, 400
PspN4I	GGNNCC	3 cut(s)	286, 420, 453
PspPI	GGNCC	1 cut(s)	474
PsrI	GAACNNNNNNTAC	2 cut(s)	359, 391
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	451, 487
RsaI	GTAC	3 cut(s)	64, 293, 521
RsaNI	GTAC	3 cut(s)	63, 292, 520
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	4 cut(s)	7, 186, 206, 308
Sau3AI	GATC	4 cut(s)	312, 451, 487, 493
Sau96I	GGNCC	1 cut(s)	474
ScrFI	CCNGG	3 cut(s)	289, 402, 508
SduI	GDGCHC	1 cut(s)	421
SexAI	ACCWGGT	1 cut(s)	287
SinI	GGWCC	1 cut(s)	474
Sse9I	AATT	2 cut(s)	159, 171
SsiI	CCGC	3 cut(s)	52, 148, 308
SspMI	CTAG	2 cut(s)	359, 447
StyD4I	CCNGG	3 cut(s)	287, 400, 506
StyI	CCWWGG	2 cut(s)	446, 470
TasI	AATT	2 cut(s)	159, 171
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	3 cut(s)	6, 185, 205
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	8 cut(s)	131, 248, 335, 367, 476, 502, 530, 537
VpaK11BI	GGWCC	1 cut(s)	474
XmaJI	CCTAGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	126
XspI	CTAG	2 cut(s)	359, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.