Rh4CG430700

quinone binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011990
Physical Location & Seq
Forward (+)
67129701 .. 67130571
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG430700.1

Sequence Viewer

Length: 405 bp
ATGAGCTGCTCATTCACCTCCCAAATCCCACAGGCTCTGCCTTCTCTCAACCGCCCTCGACGTACAGCTTCTCCTACAATCACTTTTAGTCTCAGTCAGTCCCACGATGCAAAGCCTCAAAAGACATTCACAAGCATAATTCAAAACGACCTAAAGAAATTTGGTTCAGCAATTCAAGTTGGAGCAGCTTTGGCCACTATTGAGCTGCCTGCATTTGCTGTGACTGGTATGAACTATGAGGAAGATTTATCGTGGACTCTGATACAATCCGGAATCGTGGGCACCTGGTACTTCCTAATCATGCCGCCGATCATCATGAACTGGCTTCGGATAAGGTGGTATAAGCGAAATCTCCTAGAGATGTATTTTCAGTTCATGTTTGTCTTCCTCTTCTTTCCTGGGTGA

Protein Analysis

134

Amino Acids

15.38

Weight (kDa)

9.51

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NdhL PF10716 77 - 134 4e-21 NADH dehydrogenase transmembrane subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70760
fragaria_vesca FvH4_4g34090
malus_domestica MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis pycom16g02020
rosa_chinensis RchiOBHm_Chr4g0443591
rosa_laevigata RLG00000005912
rosa_multiflora Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii Rroxscaffold_5G00384140
rosa_samantha Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana Rw4G034790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 2 cut(s) 52, 305
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 2 cut(s) 64, 290
AgsI TTSAA 2 cut(s) 143, 176
AjnI CCWGG 2 cut(s) 284, 397
AluBI AGCT 4 cut(s) 6, 68, 188, 205
AluI AGCT 4 cut(s) 6, 68, 188, 205
Alw26I GTCTC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 269
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 6, 185, 205
ApoI RAATTY 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 284
BalI TGGCCA 1 cut(s) 194
BanI GGYRCC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 376
BbvI GCAGC 2 cut(s) 192, 197
BciT130I CCWGG 2 cut(s) 286, 399
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 356
BisI GCNGC 4 cut(s) 7, 186, 206, 305
BlsI GCNGC 4 cut(s) 8, 187, 207, 306
Bme1390I CCNGG 2 cut(s) 286, 399
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 2 cut(s) 286, 399
BmsI GCATC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 398
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bse1I ACTGG 2 cut(s) 229, 326
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 2 cut(s) 286, 399
BseDI CCNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 2 cut(s) 229, 326
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 2 cut(s) 192, 197
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 281
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 284
Bsp13I TCCGGA 1 cut(s) 269
Bsp143I GATC 1 cut(s) 309
BspACI CCGC 2 cut(s) 52, 305
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 105
BspEI TCCGGA 1 cut(s) 269
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 281
BsrI ACTGG 2 cut(s) 229, 326
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 286, 399
Bst6I CTCTTC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 92
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 2 cut(s) 286, 399
BstSCI CCNGG 2 cut(s) 284, 397
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 192, 197
BstV2I GAAGAC 1 cut(s) 376
BsuRI GGCC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 37
CciI TCATGA 1 cut(s) 315
CsiI ACCWGGT 1 cut(s) 284
Csp6I GTAC 2 cut(s) 63, 289
CviAII CATG 3 cut(s) 301, 316, 376
CviJI RGCY 8 cut(s) 6, 35, 68, 115, 188, 194, 205, 325
CviKI_1 RGCY 8 cut(s) 6, 35, 68, 115, 188, 194, 205, 325
CviQI GTAC 2 cut(s) 63, 289
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 284, 397
FaeI CATG 3 cut(s) 304, 319, 379
FaiI YATR 7 cut(s) 137, 230, 237, 302, 317, 342, 377
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 300, 315, 375
Fnu4HI GCNGC 4 cut(s) 7, 186, 206, 305
Fsp4HI GCNGC 4 cut(s) 7, 186, 206, 305
FspBI CTAG 1 cut(s) 356
GluI GCNGC 4 cut(s) 7, 186, 206, 305
HaeIII GGCC 1 cut(s) 194
HapII CCGG 1 cut(s) 270
Hin1II CATG 3 cut(s) 304, 319, 379
HinfI GANTC 2 cut(s) 256, 273
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 261, 330
Hpy188III TCNNGA 2 cut(s) 270, 316
Hpy8I GTNNAC 1 cut(s) 255
Hpy99I CGWCG 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 110, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 3 cut(s) 304, 319, 379
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 17, 210, 222, 271, 283, 298, 307, 384
Lsp1109I GCAGC 2 cut(s) 192, 197
LweI GCATC 1 cut(s) 97
MabI ACCWGGT 1 cut(s) 284
MaeI CTAG 1 cut(s) 356
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 3 cut(s) 254, 376, 382
MhlI GDGCHC 1 cut(s) 284
MlsI TGGCCA 1 cut(s) 194
MluCI AATT 3 cut(s) 138, 158, 171
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 5 cut(s) 28, 66, 126, 232, 398
Mox20I TGGCCA 1 cut(s) 194
MroI TCCGGA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 194
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 286, 399
MvaI CCWGG 2 cut(s) 286, 399
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 1 cut(s) 309
NlaIII CATG 3 cut(s) 304, 319, 379
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 220
PagI TCATGA 1 cut(s) 315
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 4 cut(s) 8, 187, 207, 306
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 284, 397
PspGI CCWGG 2 cut(s) 284, 397
PspN4I GGNNCC 1 cut(s) 283
PsrI GAACNNNNNNTAC 2 cut(s) 356, 388
PstNI CAGNNNCTG 1 cut(s) 37
RsaI GTAC 2 cut(s) 64, 290
RsaNI GTAC 2 cut(s) 63, 289
SatI GCNGC 4 cut(s) 7, 186, 206, 305
Sau3AI GATC 1 cut(s) 309
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 286, 399
SduI GDGCHC 1 cut(s) 284
SetI ASST 9 cut(s) 8, 20, 64, 70, 153, 190, 207, 287, 338
SexAI ACCWGGT 1 cut(s) 284
SfaNI GCATC 1 cut(s) 97
Sse9I AATT 3 cut(s) 138, 158, 171
SsiI CCGC 2 cut(s) 52, 305
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 2 cut(s) 284, 397
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 58
TasI AATT 3 cut(s) 138, 158, 171
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 273
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 6, 185, 205
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 245, 332, 364
XapI RAATTY 1 cut(s) 158
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.