Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Forward (+)

56383467 .. 56384433

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG416200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGCTGCTCATTCACCTCCCAAATCCCACAGGCTCTGCCTTCCCTCAACCGCCCTCGACGTGTAGCTTCTCCCACAATCACTATTAGTATCAGTCAGTCCCACGATGCAAAGCCTCAAAAGACATTCACAAGCATAATTCAAAACGACCTAAAGAAATTTGGTTCAGCAATTCAAGTTGGAGCAGCTTTGGCCACTATTGAGCTGCCTGCATTTGCTGTGACTGGTATGAACTATGAGGAAGATTTATCTTGGACTTTGATACAATCCGGAATCGTGGGCACCTGGTACTTCCTAATCATGCCGCCGATCATCATGAACTGGCTTCGGATAAGGTGGTATAAGCGAAATCTCCTAGAGATGTATTTTCAGTTCATGTTTGTCTTCCTCTTCTTTCCTGGTGTACTTCTTTGGGCACCATTTCTGAACTTCAGGAAGTTCCCAAGGGATCCAAACATGAAGTATCCTTGGTCCAAGCCAGAAGATCCCAATCTCGTTAAAGCTGGGTTCTTAAAGTACCCTTTTGCTGAACCTGAAGAATATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

182

Amino Acids

21.1

Weight (kDa)

9.38

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhL	PF10716	77 - 150	1.8e-31	NADH dehydrogenase transmembrane subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	281, 415
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	2 cut(s)	52, 305
AclWI	GGATC	3 cut(s)	443, 456, 479
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	3 cut(s)	290, 405, 518
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	143, 176
AjiI	CACGTC	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	284, 397
AluBI	AGCT	5 cut(s)	6, 68, 188, 205, 503
AluI	AGCT	5 cut(s)	6, 68, 188, 205, 503
AlwI	GGATC	3 cut(s)	443, 456, 479
AlwNI	CAGNNNCTG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	6, 185, 205
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	471
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	471
BaeGI	GKGCMC	2 cut(s)	284, 418
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	448
BanI	GGYRCC	2 cut(s)	281, 415
BbsI	GAAGAC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	192, 197
BciT130I	CCWGG	2 cut(s)	286, 399
BciVI	GTATCC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	4 cut(s)	7, 186, 206, 305
BlsI	GCNGC	4 cut(s)	8, 187, 207, 306
Bme1390I	CCNGG	2 cut(s)	286, 399
Bme18I	GGWCC	1 cut(s)	471
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	3 cut(s)	283, 417, 450
BmrFI	CCNGG	2 cut(s)	286, 399
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	376
BsaBI	GATNNNNATC	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	443, 467
BsaWI	WCCGGW	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	229, 326
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	286, 399
BseDI	CCNNGG	2 cut(s)	443, 467
BseJI	GATNNNNATC	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	229, 326
BseSI	GKGCMC	2 cut(s)	284, 418
BseXI	GCAGC	2 cut(s)	192, 197
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	2 cut(s)	281, 415
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	284, 418
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	309, 448, 484
BspACI	CCGC	2 cut(s)	52, 305
BspANI	GGCC	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	315, 545
BspLI	GGNNCC	3 cut(s)	283, 417, 450
BspPI	GGATC	3 cut(s)	443, 456, 479
BspT107I	GGYRCC	2 cut(s)	281, 415
BsrI	ACTGG	2 cut(s)	229, 326
BssECI	CCNNGG	2 cut(s)	443, 467
BssMI	GATC	3 cut(s)	309, 448, 484
BssT1I	CCWWGG	2 cut(s)	443, 467
Bst2UI	CCWGG	2 cut(s)	286, 399
Bst6I	CTCTTC	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	312, 451, 487
BstMBI	GATC	3 cut(s)	309, 448, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	2 cut(s)	286, 399
BstSCI	CCNGG	2 cut(s)	284, 397
BstSLI	GKGCMC	2 cut(s)	284, 418
BstV1I	GCAGC	2 cut(s)	192, 197
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	2 cut(s)	448, 484
BstYI	RGATCY	2 cut(s)	448, 484
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	37
CciI	TCATGA	2 cut(s)	315, 545
Cfr13I	GGNCC	1 cut(s)	471
CsiI	ACCWGGT	1 cut(s)	284
Csp6I	GTAC	3 cut(s)	289, 404, 517
CviAII	CATG	5 cut(s)	301, 316, 376, 457, 546
CviQI	GTAC	3 cut(s)	289, 404, 517
DpnI	GATC	3 cut(s)	311, 450, 486
DpnII	GATC	3 cut(s)	309, 448, 484
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco130I	CCWWGG	2 cut(s)	443, 467
Eco47I	GGWCC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	415
EcoRII	CCWGG	2 cut(s)	284, 397
EcoT14I	CCWWGG	2 cut(s)	443, 467
ErhI	CCWWGG	2 cut(s)	443, 467
FaeI	CATG	5 cut(s)	304, 319, 379, 460, 549
FaiI	YATR	9 cut(s)	137, 230, 237, 302, 317, 342, 377, 458, 547
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	5 cut(s)	300, 315, 375, 456, 545
Fnu4HI	GCNGC	4 cut(s)	7, 186, 206, 305
Fsp4HI	GCNGC	4 cut(s)	7, 186, 206, 305
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	4 cut(s)	7, 186, 206, 305
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	5 cut(s)	304, 319, 379, 460, 549
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	330, 426
Hpy188III	TCNNGA	4 cut(s)	270, 316, 433, 546
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	110, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	5 cut(s)	304, 319, 379, 460, 549
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	309, 448, 484
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	2 cut(s)	192, 197
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	284
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	311, 450, 486
MboI	GATC	3 cut(s)	309, 448, 484
MboII	GAAGA	5 cut(s)	254, 376, 382, 494, 548
MflI	RGATCY	2 cut(s)	448, 484
MhlI	GDGCHC	2 cut(s)	284, 418
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	138, 158, 171
MluNI	TGGCCA	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	6 cut(s)	28, 56, 66, 126, 232, 398
Mox20I	TGGCCA	1 cut(s)	194
MroI	TCCGGA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	498, 512
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	286, 399
MvaI	CCWGG	2 cut(s)	286, 399
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	3 cut(s)	309, 448, 484
NlaIII	CATG	5 cut(s)	304, 319, 379, 460, 549
NlaIV	GGNNCC	3 cut(s)	283, 417, 450
NmuCI	GTSAC	1 cut(s)	220
PagI	TCATGA	2 cut(s)	315, 545
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	4 cut(s)	8, 187, 207, 306
Psp6I	CCWGG	2 cut(s)	284, 397
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	284, 397
PspN4I	GGNNCC	3 cut(s)	283, 417, 450
PspPI	GGNCC	1 cut(s)	471
PsrI	GAACNNNNNNTAC	2 cut(s)	356, 388
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	448, 484
RsaI	GTAC	3 cut(s)	290, 405, 518
RsaNI	GTAC	3 cut(s)	289, 404, 517
SaqAI	TTAA	2 cut(s)	498, 512
SatI	GCNGC	4 cut(s)	7, 186, 206, 305
Sau3AI	GATC	3 cut(s)	309, 448, 484
Sau96I	GGNCC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	286, 399
SduI	GDGCHC	2 cut(s)	284, 418
SexAI	ACCWGGT	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	471
Sse9I	AATT	3 cut(s)	138, 158, 171
SsiI	CCGC	2 cut(s)	52, 305
SspI	AATATT	1 cut(s)	542
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	284, 397
StyI	CCWWGG	2 cut(s)	443, 467
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	138, 158, 171
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	498, 512
Tru9I	TTAA	2 cut(s)	498, 512
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	6, 185, 205
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	5 cut(s)	245, 332, 364, 473, 534
VpaK11BI	GGWCC	1 cut(s)	471
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.