Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Forward (+)

1573997 .. 1574833

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1021900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCCATCAATGTCAAGCCTGAAAAGGCACAAGCTTTCTTTCTCAATCTCCAATTTCCATTCTAAAAAAATTATCCAGATCGTTAAAAGGATCCGAACTTTTTCCTTTTCAGATCAGTCAAAAGCCAACCGACTATTCCACCTGAAGAAATCTAGCTTGGCAATTCAAGTTGGAGAAGGTTTGGCCACTATTGAGCAGCCTGCGTTTGCTGTCACTGGTATAAACTACGAGGAAGATTTGACATGGGTTTTAATACAGTCAGGAGTTGTTGCCTTCTGGTACTTCCTTATCATGCCACCAATCATCATGAACTGGCTTCGGATTAGGTGGTACAAGAGAAATCTCCTAGAGATGTACTTTCAGTTCATGTTTTGTCTTCTTGTTCTTCCCTGCGCAAGTGCCCCTTTTTTAATCATCTCATTTGGTTTCTTCTTGATTATCCTAAACAAACCACCAAAATTTGGGGAAGTGATTCCGCACACTTCTGCTTATTTCTCGTCTTCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

170

Amino Acids

19.6

Weight (kDa)

9.96

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhL	PF10716	75 - 136	7e-16	NADH dehydrogenase transmembrane subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	394
AccB7I	CCANNNNNTGG	1 cut(s)	461
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	2 cut(s)	85, 98
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	3 cut(s)	281, 332, 356
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	1 cut(s)	167
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 140, 151, 172
AluBI	AGCT	2 cut(s)	34, 156
AluI	AGCT	2 cut(s)	34, 156
AlwI	GGATC	2 cut(s)	85, 98
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	458
Asp700I	GAANNNNTTC	2 cut(s)	100, 471
AspLEI	GCGC	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	368, 492
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	1 cut(s)	13
BfaI	CTAG	2 cut(s)	153, 347
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	368, 492
Bpu14I	TTCGAA	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	2 cut(s)	220, 317
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	220, 317
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	461
BsnI	GGCC	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	78, 90, 112
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	85, 98
BspT104I	TTCGAA	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	220, 317
BssMI	GATC	3 cut(s)	78, 90, 112
Bst4CI	ACNGT	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	3 cut(s)	81, 93, 115
BstMBI	GATC	3 cut(s)	78, 90, 112
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	2 cut(s)	368, 492
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	201
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	1 cut(s)	395
Csp6I	GTAC	3 cut(s)	280, 331, 355
CviAII	CATG	4 cut(s)	243, 292, 307, 367
CviJI	RGCY	7 cut(s)	18, 34, 125, 156, 185, 199, 316
CviKI_1	RGCY	7 cut(s)	18, 34, 125, 156, 185, 199, 316
CviQI	GTAC	3 cut(s)	280, 331, 355
DpnI	GATC	3 cut(s)	80, 92, 114
DpnII	GATC	3 cut(s)	78, 90, 112
EaeI	YGGCCR	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	164
FaeI	CATG	4 cut(s)	246, 295, 310, 370
FaiI	YATR	5 cut(s)	221, 244, 293, 308, 368
FalI	AAGNNNNNCTT	2 cut(s)	388, 420
FatI	CATG	4 cut(s)	242, 291, 306, 366
Fnu4HI	GCNGC	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	2 cut(s)	153, 347
FspI	TGCGCA	1 cut(s)	394
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	4 cut(s)	246, 295, 310, 370
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	1 cut(s)	472
Hpy188I	TCNGA	3 cut(s)	95, 112, 321
Hpy188III	TCNNGA	4 cut(s)	76, 261, 307, 433
HpyAV	CCTTC	2 cut(s)	170, 283
HpyCH4III	ACNGT	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	246, 295, 310, 370
HspAI	GCGC	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	78, 90, 112
LpnPI	CCDG	9 cut(s)	32, 89, 155, 201, 213, 246, 262, 298, 403
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	2 cut(s)	153, 347
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	3 cut(s)	80, 92, 114
MboI	GATC	3 cut(s)	78, 90, 112
MboII	GAAGA	6 cut(s)	157, 245, 368, 377, 421, 492
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	403
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	4 cut(s)	52, 69, 162, 458
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	1 cut(s)	223
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	2 cut(s)	100, 471
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	3 cut(s)	84, 251, 410
Msp20I	TGGCCA	1 cut(s)	185
NdeII	GATC	3 cut(s)	78, 90, 112
NlaIII	CATG	4 cut(s)	246, 295, 310, 370
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	211
NsbI	TGCGCA	1 cut(s)	394
NspV	TTCGAA	1 cut(s)	503
PagI	TCATGA	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	100, 471
PfeI	GAWTC	1 cut(s)	472
PflMI	CCANNNNNTGG	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	92
PsrI	GAACNNNNNNTAC	2 cut(s)	347, 379
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	3 cut(s)	281, 332, 356
RsaNI	GTAC	3 cut(s)	280, 331, 355
SaqAI	TTAA	3 cut(s)	84, 251, 410
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	3 cut(s)	78, 90, 112
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	5 cut(s)	36, 144, 158, 181, 329
SfuI	TTCGAA	1 cut(s)	503
Sse9I	AATT	4 cut(s)	52, 69, 162, 458
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	2 cut(s)	153, 347
TaaI	ACNGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	503
TasI	AATT	4 cut(s)	52, 69, 162, 458
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	3 cut(s)	84, 251, 410
Tru9I	TTAA	3 cut(s)	84, 251, 410
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	323, 355
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	458
XmnI	GAANNNNTTC	2 cut(s)	100, 471
XspI	CTAG	2 cut(s)	153, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.