Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Reverse (-)

31305021 .. 31307154

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G330000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGCTGCTCATTCACCTTCCAAATTCCCCAGGCTTTGCCTTCTCTTAGCCATCCACGACGTACTTCTGTCACAATCACTTCTCAGCACAGACAGTCCTATGATCCTAAGCCTGAAAAGACAGTCATCACAAGCATCTTTCAAAACCCAGCTGACTATTTTCACCTAAAGAAGTCTAGTCTGGCAATTCAAGTTGGAGCAGTTTTGGCCACTCAGATTGAGCAGCCTGCATTTGCTGTCACTGGTGTCAACTTTGAGGAAGATTTGACATGGGTTTTGATACAATCGGGAGTTATTGCCTTCTGGTACTTCCTTCTCATGCCACCAATCATCATGAACTGGCTTCGGATAAGGTGGTATAAGAGAAATCTCTTAGAGATGTATTTGCAGTTCATGTGTGTCTTCTTGTTTTTTCCTGGTGTACTTCTTTGGGCACCATTTCTGAACTTCAGGAAGTTCCCAAGGGATCCATCCATGAAGTACCCTTGGTCGACGCCGGAAGATCCTGACCAAGTTAAAGCTGGGTTTTTAAAATACCCATTTGCTGAACCCGAAGATTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

189

Amino Acids

21.99

Weight (kDa)

8.52

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	491
AclWI	GGATC	4 cut(s)	98, 461, 474, 497
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	433
AcyI	GRCGYC	1 cut(s)	494
AfaI	GTAC	4 cut(s)	64, 308, 423, 482
AgsI	TTSAA	2 cut(s)	143, 191
AjnI	CCWGG	2 cut(s)	30, 415
AluBI	AGCT	3 cut(s)	6, 152, 521
AluI	AGCT	3 cut(s)	6, 152, 521
AlwI	GGATC	4 cut(s)	98, 461, 474, 497
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	6, 223
ApoI	RAATTY	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AsuHPI	GGTGA	2 cut(s)	7, 155
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	2 cut(s)	60, 478
BciT130I	CCWGG	2 cut(s)	32, 417
BfaI	CTAG	1 cut(s)	177
BisI	GCNGC	2 cut(s)	7, 224
BlsI	GCNGC	2 cut(s)	8, 225
Bme1390I	CCNGG	2 cut(s)	32, 417
BmiI	GGNNCC	2 cut(s)	435, 468
BmrFI	CCNGG	2 cut(s)	32, 417
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	30, 461, 485
Bse1I	ACTGG	2 cut(s)	247, 344
BseBI	CCWGG	2 cut(s)	32, 417
BseDI	CCNNGG	3 cut(s)	30, 461, 485
BseGI	GGATG	2 cut(s)	52, 470
BseMII	CTCAG	2 cut(s)	98, 227
BseNI	ACTGG	2 cut(s)	247, 344
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	2 cut(s)	148, 521
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	497
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	103, 466, 502
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	97, 226
BspHI	TCATGA	2 cut(s)	333, 563
BspLI	GGNNCC	2 cut(s)	435, 468
BspPI	GGATC	4 cut(s)	98, 461, 474, 497
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	247, 344
BssECI	CCNNGG	3 cut(s)	30, 461, 485
BssMI	GATC	3 cut(s)	103, 466, 502
BssNI	GRCGYC	1 cut(s)	494
BssT1I	CCWWGG	2 cut(s)	461, 485
Bst2UI	CCWGG	2 cut(s)	32, 417
Bst4CI	ACNGT	2 cut(s)	96, 124
BstACI	GRCGYC	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	5 cut(s)	47, 84, 108, 213, 373
BstF5I	GGATG	2 cut(s)	52, 470
BstKTI	GATC	3 cut(s)	106, 469, 505
BstMBI	GATC	3 cut(s)	103, 466, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	2 cut(s)	32, 417
BstSCI	CCNGG	2 cut(s)	30, 415
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	2 cut(s)	466, 502
BstYI	RGATCY	2 cut(s)	466, 502
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	52, 470
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	2 cut(s)	333, 563
CseI	GACGC	1 cut(s)	502
Csp6I	GTAC	4 cut(s)	63, 307, 422, 481
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	6 cut(s)	270, 319, 334, 394, 475, 564
CviJI	RGCY	9 cut(s)	6, 35, 51, 112, 152, 209, 226, 343, 521
CviKI_1	RGCY	9 cut(s)	6, 35, 51, 112, 152, 209, 226, 343, 521
CviQI	GTAC	4 cut(s)	63, 307, 422, 481
DdeI	CTNAG	5 cut(s)	47, 84, 108, 213, 373
DpnI	GATC	3 cut(s)	105, 468, 504
DpnII	GATC	3 cut(s)	103, 466, 502
DraI	TTTAAA	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	207
Eco130I	CCWWGG	2 cut(s)	461, 485
Eco57I	CTGAAG	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	30, 415
EcoT14I	CCWWGG	2 cut(s)	461, 485
ErhI	CCWWGG	2 cut(s)	461, 485
FaeI	CATG	6 cut(s)	273, 322, 337, 397, 478, 567
FaiI	YATR	8 cut(s)	102, 271, 320, 335, 360, 395, 476, 565
FatI	CATG	6 cut(s)	269, 318, 333, 393, 474, 563
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	2 cut(s)	7, 224
FokI	GGATG	2 cut(s)	39, 457
Fsp4HI	GCNGC	2 cut(s)	7, 224
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	2 cut(s)	7, 224
GsaI	CCCAGC	2 cut(s)	152, 525
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	497
HgaI	GACGC	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	494
Hin1II	CATG	6 cut(s)	273, 322, 337, 397, 478, 567
HincII	GTYRAC	2 cut(s)	250, 492
HindII	GTYRAC	2 cut(s)	250, 492
HpaII	CCGG	1 cut(s)	497
HphI	GGTGA	2 cut(s)	7, 155
Hpy166II	GTNNAC	3 cut(s)	250, 422, 492
Hpy188I	TCNGA	3 cut(s)	216, 348, 444
Hpy188III	TCNNGA	5 cut(s)	288, 334, 451, 506, 564
Hpy8I	GTNNAC	3 cut(s)	250, 422, 492
Hpy99I	CGWCG	2 cut(s)	63, 496
HpyAV	CCTTC	4 cut(s)	28, 51, 310, 323
HpyCH4III	ACNGT	2 cut(s)	96, 124
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	230, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	5 cut(s)	47, 84, 108, 213, 373
HpySE526I	ACGT	1 cut(s)	61
Hsp92I	GRCGYC	1 cut(s)	494
Hsp92II	CATG	6 cut(s)	273, 322, 337, 397, 478, 567
Kzo9I	GATC	3 cut(s)	103, 466, 502
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	70, 238
MalI	GATC	3 cut(s)	105, 468, 504
MboI	GATC	3 cut(s)	103, 466, 502
MboII	GAAGA	4 cut(s)	272, 394, 512, 566
MflI	RGATCY	2 cut(s)	466, 502
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	24, 186
MluNI	TGGCCA	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	1 cut(s)	250
Mox20I	TGGCCA	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	2 cut(s)	516, 530
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	32, 417
MvaI	CCWGG	2 cut(s)	32, 417
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	3 cut(s)	103, 466, 502
NlaIII	CATG	6 cut(s)	273, 322, 337, 397, 478, 567
NlaIV	GGNNCC	2 cut(s)	435, 468
NmuCI	GTSAC	2 cut(s)	70, 238
PagI	TCATGA	2 cut(s)	333, 563
PkrI	GCNGC	2 cut(s)	8, 225
Psp6I	CCWGG	2 cut(s)	30, 415
PspFI	CCCAGC	2 cut(s)	148, 521
PspGI	CCWGG	2 cut(s)	30, 415
PspN4I	GGNNCC	2 cut(s)	435, 468
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PsuI	RGATCY	2 cut(s)	466, 502
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	4 cut(s)	64, 308, 423, 482
RsaNI	GTAC	4 cut(s)	63, 307, 422, 481
SalI	GTCGAC	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	516, 530
SatI	GCNGC	2 cut(s)	7, 224
Sau3AI	GATC	3 cut(s)	103, 466, 502
ScrFI	CCNGG	2 cut(s)	32, 417
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	7 cut(s)	8, 20, 64, 154, 168, 356, 523
SfaNI	GCATC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	24, 186
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	30, 415
StyI	CCWWGG	2 cut(s)	461, 485
TaaI	ACNGT	2 cut(s)	96, 124
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	491
TasI	AATT	2 cut(s)	24, 186
TatI	WGTACW	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	516, 530
Tru9I	TTAA	2 cut(s)	516, 530
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	70, 238
TseI	GCWGC	2 cut(s)	6, 223
Tsp45I	GTSAC	2 cut(s)	70, 238
TspDTI	ATGAA	4 cut(s)	350, 382, 491, 552
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.