Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011070.1

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Reverse (-)

3318 .. 3818

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011070.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgaactatgaggaagatttatcatggactctgatacaatccggaatcgtgggcacctggtacttcctaattatgccgccgatcatcatgaactggcttcggataaggtggtataagcgaaatctcctagagatgtattttcagttcatgtttgtcttcctcttctttcctgggaagttcccaagggatccaaacatgaagtatccttggtccaagccagacgatcccgatctcgttaaagcaggattcttaaagtacccttttgccgaacctgaagagtattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

95

Amino Acids

11.69

Weight (kDa)

5.3

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	182, 195, 218
AfaI	GTAC	2 cut(s)	62, 257
AjnI	CCWGG	2 cut(s)	56, 169
AlwI	GGATC	3 cut(s)	182, 195, 218
Aor13HI	TCCGGA	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	148
BciT130I	CCWGG	2 cut(s)	58, 171
BciVI	GTATCC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	213
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	58, 171
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	55, 189
BmrFI	CCNGG	2 cut(s)	58, 171
BpiI	GAAGAC	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	170, 182, 206
BsaWI	WCCGGW	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	228
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	58, 171
BseDI	CCNNGG	3 cut(s)	170, 182, 206
BseJI	GATNNNNATC	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	81, 187, 223, 229
BspACI	CCGC	1 cut(s)	77
BspEI	TCCGGA	1 cut(s)	41
BspHI	TCATGA	2 cut(s)	87, 284
BspLI	GGNNCC	2 cut(s)	55, 189
BspPI	GGATC	3 cut(s)	182, 195, 218
BspT107I	GGYRCC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	170, 182, 206
BssMI	GATC	4 cut(s)	81, 187, 223, 229
BssT1I	CCWWGG	2 cut(s)	182, 206
Bst2UI	CCWGG	2 cut(s)	58, 171
Bst6I	CTCTTC	2 cut(s)	167, 270
BstKTI	GATC	4 cut(s)	84, 190, 226, 232
BstMBI	GATC	4 cut(s)	81, 187, 223, 229
BstNI	CCWGG	2 cut(s)	58, 171
BstSCI	CCNGG	2 cut(s)	56, 169
BstSLI	GKGCMC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	213
CciI	TCATGA	2 cut(s)	87, 284
Cfr13I	GGNCC	1 cut(s)	210
CsiI	ACCWGGT	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	61, 256
CviAII	CATG	5 cut(s)	24, 88, 148, 196, 285
CviJI	RGCY	2 cut(s)	97, 217
CviKI_1	RGCY	2 cut(s)	97, 217
CviQI	GTAC	2 cut(s)	61, 256
DpnI	GATC	4 cut(s)	83, 189, 225, 231
DpnII	GATC	4 cut(s)	81, 187, 223, 229
Eam1104I	CTCTTC	2 cut(s)	167, 270
EarI	CTCTTC	2 cut(s)	167, 270
Eco130I	CCWWGG	2 cut(s)	182, 206
Eco47I	GGWCC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	56, 169
EcoT14I	CCWWGG	2 cut(s)	182, 206
ErhI	CCWWGG	2 cut(s)	182, 206
FaeI	CATG	5 cut(s)	27, 91, 151, 199, 288
FaiI	YATR	8 cut(s)	9, 25, 74, 89, 114, 149, 197, 286
FatI	CATG	5 cut(s)	23, 87, 147, 195, 284
Fnu4HI	GCNGC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	77
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	5 cut(s)	27, 91, 151, 199, 288
HinfI	GANTC	3 cut(s)	28, 45, 246
HpaII	CCGG	1 cut(s)	42
Hpy188I	TCNGA	2 cut(s)	33, 102
Hpy188III	TCNNGA	4 cut(s)	42, 88, 227, 285
Hsp92II	CATG	5 cut(s)	27, 91, 151, 199, 288
Kpn2I	TCCGGA	1 cut(s)	41
Kzo9I	GATC	4 cut(s)	81, 187, 223, 229
LpnPI	CCDG	8 cut(s)	43, 55, 70, 79, 156, 183, 228, 231
MabI	ACCWGGT	1 cut(s)	56
MaeI	CTAG	1 cut(s)	128
MalI	GATC	4 cut(s)	83, 189, 225, 231
MboI	GATC	4 cut(s)	81, 187, 223, 229
MboII	GAAGA	4 cut(s)	26, 148, 154, 287
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	2 cut(s)	4, 170
MroI	TCCGGA	1 cut(s)	41
MseI	TTAA	2 cut(s)	237, 251
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	58, 171
MvaI	CCWGG	2 cut(s)	58, 171
NdeII	GATC	4 cut(s)	81, 187, 223, 229
NlaIII	CATG	5 cut(s)	27, 91, 151, 199, 288
NlaIV	GGNNCC	2 cut(s)	55, 189
PagI	TCATGA	2 cut(s)	87, 284
PfeI	GAWTC	2 cut(s)	45, 246
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	56, 169
PspGI	CCWGG	2 cut(s)	56, 169
PspN4I	GGNNCC	2 cut(s)	55, 189
PspPI	GGNCC	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	2 cut(s)	62, 257
RsaNI	GTAC	2 cut(s)	61, 256
SaqAI	TTAA	2 cut(s)	237, 251
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	4 cut(s)	81, 187, 223, 229
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	2 cut(s)	58, 171
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	3 cut(s)	59, 110, 274
SexAI	ACCWGGT	1 cut(s)	56
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	2 cut(s)	56, 169
StyI	CCWWGG	2 cut(s)	182, 206
TasI	AATT	1 cut(s)	69
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	2 cut(s)	45, 246
Tru1I	TTAA	2 cut(s)	237, 251
Tru9I	TTAA	2 cut(s)	237, 251
TspDTI	ATGAA	5 cut(s)	17, 104, 136, 212, 273
VpaK11BI	GGWCC	1 cut(s)	210
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.