Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Forward (+)

1270076 .. 1271393

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGCTGCTCATTCAGCTTCCAAATCCCCCAGGCGCTGCCTTCTCTCGGCCGTTCCCGGCGTTCTTCTTCTCTCCCAATCGCCTCTCAACACAGACAGCCCAACAATGTCGATCCTCAAAAGACAGTCGGAAGCATCCGTCAAAACCCAATTGACTGTTTCCACCTGAAGAAATCGAACTTGGCAATTCAAGTTGGAGCAGTTTTGGCCACCCAGATTGAGCAGCCTGCATTTGCCGTCACCGGAATCAACTACGAGGAAGATTTGACATGGGTTTTAATACAGTCCGGAGTTGTTGCCTTCTGGTACTTCCTTATCATGCCACCAATCATCATGAACTGGCTTCGGATTAGGTGGTACAAGAGAAATCTTCTAGAGATGTACTTTCAGTTCATGTTTGTCTTCTTGTTCTTTCCTGGAGTAATACTTTGGGCACCATTTCTGAACTTCAGGAAGTTCCCACGAGATCGATCTATGAAGTACCCTTGGTCGAAGCCAGACGATCCTGACCAAATAAAAGCTGGGTTTCTAAAGTACCCATTTGCAGAACCTGAAGATTACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

189

Amino Acids

21.99

Weight (kDa)

9.45

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	433
AccIII	TCCGGA	1 cut(s)	287
AclWI	GGATC	2 cut(s)	107, 497
AcoI	YGGCCR	2 cut(s)	49, 207
AcuI	CTGAAG	2 cut(s)	188, 433
AfaI	GTAC	5 cut(s)	308, 359, 383, 482, 536
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	30, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	6, 18, 521
AluI	AGCT	3 cut(s)	6, 18, 521
AlwI	GGATC	2 cut(s)	107, 497
AlwNI	CAGNNNCTG	2 cut(s)	37, 551
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	2 cut(s)	49, 207
ApeKI	GCWGC	3 cut(s)	6, 37, 223
AspLEI	GCGC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	24, 235
BceAI	ACGGC	2 cut(s)	36, 221
BciT130I	CCWGG	2 cut(s)	32, 417
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	3 cut(s)	7, 38, 224
BlsI	GCNGC	3 cut(s)	8, 39, 225
Bme1390I	CCNGG	3 cut(s)	32, 58, 417
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	3 cut(s)	32, 58, 417
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	30, 485
BsaWI	WCCGGW	2 cut(s)	242, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	32, 417
BseCI	ATCGAT	1 cut(s)	469
BseDI	CCNNGG	2 cut(s)	30, 485
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	436
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	24, 235
BseYI	CCCAGC	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	2 cut(s)	51, 209
BshNI	GGYRCC	1 cut(s)	433
BshVI	ATCGAT	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	3 cut(s)	58, 243, 288
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	2 cut(s)	51, 209
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	4 cut(s)	112, 466, 470, 502
BspANI	GGCC	2 cut(s)	51, 209
BspDI	ATCGAT	1 cut(s)	469
BspEI	TCCGGA	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	107, 497
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	30, 485
BssMI	GATC	4 cut(s)	112, 466, 470, 502
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	485
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	2 cut(s)	32, 417
Bst4CI	ACNGT	3 cut(s)	127, 158, 285
BstC8I	GCNNGC	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	4 cut(s)	115, 469, 473, 505
BstMBI	GATC	4 cut(s)	112, 466, 470, 502
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 206
BstNI	CCWGG	2 cut(s)	32, 417
BstSCI	CCNGG	3 cut(s)	30, 56, 415
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	24, 235
BstV2I	GAAGAC	1 cut(s)	394
BstZI	CGGCCG	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	51, 209
BsuTUI	ATCGAT	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	228
CaiI	CAGNNNCTG	2 cut(s)	37, 551
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	469
Csp6I	GTAC	5 cut(s)	307, 358, 382, 481, 535
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviAII	CATG	4 cut(s)	270, 319, 334, 394
CviJI	RGCY	9 cut(s)	6, 18, 51, 100, 209, 226, 343, 496, 521
CviKI_1	RGCY	9 cut(s)	6, 18, 51, 100, 209, 226, 343, 496, 521
CviQI	GTAC	5 cut(s)	307, 358, 382, 481, 535
DpnI	GATC	4 cut(s)	114, 468, 472, 504
DpnII	GATC	4 cut(s)	112, 466, 470, 502
EaeI	YGGCCR	2 cut(s)	49, 207
EagI	CGGCCG	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	485
Eco52I	CGGCCG	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	188, 433
EcoRII	CCWGG	2 cut(s)	30, 415
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	4 cut(s)	273, 322, 337, 397
FaiI	YATR	5 cut(s)	271, 320, 335, 395, 476
FatI	CATG	4 cut(s)	269, 318, 333, 393
Fnu4HI	GCNGC	3 cut(s)	7, 38, 224
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	7, 38, 224
FspBI	CTAG	1 cut(s)	374
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	7, 38, 224
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	51, 209
HapII	CCGG	3 cut(s)	58, 243, 288
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	4 cut(s)	273, 322, 337, 397
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	3 cut(s)	58, 243, 288
HphI	GGTGA	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	131, 348, 444
Hpy188III	TCNNGA	5 cut(s)	288, 334, 374, 451, 506
HpyAV	CCTTC	2 cut(s)	51, 310
HpyCH4III	ACNGT	3 cut(s)	127, 158, 285
HpyCH4V	TGCA	2 cut(s)	230, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 206
Hsp92II	CATG	4 cut(s)	273, 322, 337, 397
HspAI	GCGC	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	287
Kzo9I	GATC	4 cut(s)	112, 466, 470, 502
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	2 cut(s)	24, 235
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	4 cut(s)	114, 468, 472, 504
MboI	GATC	4 cut(s)	112, 466, 470, 502
MboII	GAAGA	7 cut(s)	57, 60, 181, 272, 362, 394, 566
MfeI	CAATTG	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	150, 186
MluNI	TGGCCA	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	109, 175
MnlI	CCTC	3 cut(s)	94, 126, 250
Mox20I	TGGCCA	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	3 cut(s)	58, 243, 288
MspR9I	CCNGG	3 cut(s)	32, 58, 417
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	32, 417
MwoI	GCNNNNNNNGC	2 cut(s)	15, 206
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	4 cut(s)	112, 466, 470, 502
NlaIII	CATG	4 cut(s)	273, 322, 337, 397
NlaIV	GGNNCC	1 cut(s)	435
NmeAIII	GCCGAG	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	415
PkrI	GCNGC	3 cut(s)	8, 39, 225
Psp6I	CCWGG	2 cut(s)	30, 415
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	2 cut(s)	30, 415
PspN4I	GGNNCC	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PstNI	CAGNNNCTG	2 cut(s)	37, 551
RsaI	GTAC	5 cut(s)	308, 359, 383, 482, 536
RsaNI	GTAC	5 cut(s)	307, 358, 382, 481, 535
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	3 cut(s)	7, 38, 224
Sau3AI	GATC	4 cut(s)	112, 466, 470, 502
ScrFI	CCNGG	3 cut(s)	32, 58, 417
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	6 cut(s)	8, 20, 168, 356, 523, 553
SfaNI	GCATC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	150, 186
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	3 cut(s)	30, 56, 415
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	3 cut(s)	127, 158, 285
TaqI	TCGA	4 cut(s)	111, 176, 469, 491
TasI	AATT	2 cut(s)	150, 186
TatI	WGTACW	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	3 cut(s)	6, 37, 223
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	350, 382, 491
TspGWI	ACGGA	1 cut(s)	128
XbaI	TCTAGA	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	518
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.