MD16G1022900.v1.1

quinone binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011990
Physical Location & Seq
Forward (+)
1674782 .. 1675763
982 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1022900.v1.1.491

Sequence Viewer

Length: 420 bp
ATGACCTGCTCATTCAGCTTCCAAATCCCCCAGGCGCTGCCTTCTCTCGGCCGTTCCCGGCGTTCTTCTTCTCTCCCAATCGCCTCTCAACACAGACAGCCCGACAATGTCGATCCTCAAAAGACAGTCGGAAGCATCAGTCAAAAGCCAATTGACTGTTTCCACCTGAAGAAATCGAACTTGGCAATTCAAGTTGGAGCAGTTTTGGCCACCATTGAGCAGCCTGCATTTGCCGTCACCGGAATCAACTACGAGGAAGATTTGACATGGGTTTTAATACAGTCCGGAGTTGTTGCCTTCTGGTACTTCCTTATCATGCCGCCAATCATCATGAACTGGCTTCGGATTAGGTGGTACAAGAGAAATCTCCTAGAGATGTACTTTCAGTTCATGTTTGTCTTCTTATTCTTTCCTGGGTAA

Protein Analysis

140

Amino Acids

16.03

Weight (kDa)

9.34

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NdhL PF10716 83 - 139 4.6e-21 NADH dehydrogenase transmembrane subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70760
fragaria_vesca FvH4_4g34090
malus_domestica MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis pycom16g02020
rosa_chinensis RchiOBHm_Chr4g0443591
rosa_laevigata RLG00000005912
rosa_multiflora Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii Rroxscaffold_5G00384140
rosa_samantha Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana Rw4G034790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 14
AccIII TCCGGA 1 cut(s) 284
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 2 cut(s) 49, 207
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 3 cut(s) 305, 356, 380
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 191
AjnI CCWGG 2 cut(s) 30, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 284
AoxI GGCC 2 cut(s) 49, 207
ApeKI GCWGC 2 cut(s) 37, 220
AspLEI GCGC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 229
BalI TGGCCA 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 24, 232
BceAI ACGGC 2 cut(s) 36, 218
BciT130I CCWGG 2 cut(s) 32, 414
BcnI CCSGG 1 cut(s) 58
BfaI CTAG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 3 cut(s) 38, 221, 320
BlsI GCNGC 3 cut(s) 39, 222, 321
Bme1390I CCNGG 3 cut(s) 32, 58, 414
BmrFI CCNGG 3 cut(s) 32, 58, 414
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 30, 413
BsaWI WCCGGW 2 cut(s) 239, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 341
BseAI TCCGGA 1 cut(s) 284
BseBI CCWGG 2 cut(s) 32, 414
BseDI CCNNGG 2 cut(s) 30, 413
BseLI CCNNNNNNNGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 24, 232
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 2 cut(s) 51, 209
BsiEI CGRYCG 1 cut(s) 52
BsiSI CCGG 3 cut(s) 58, 240, 285
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 2 cut(s) 51, 209
Bsp13I TCCGGA 1 cut(s) 284
Bsp143I GATC 1 cut(s) 112
BspACI CCGC 1 cut(s) 320
BspANI GGCC 2 cut(s) 51, 209
BspEI TCCGGA 1 cut(s) 284
BspHI TCATGA 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 30, 413
BssMI GATC 1 cut(s) 112
Bst2UI CCWGG 2 cut(s) 32, 414
Bst4CI ACNGT 3 cut(s) 127, 158, 282
BstC8I GCNNGC 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 15, 206
BstNI CCWGG 2 cut(s) 32, 414
BstSCI CCNGG 3 cut(s) 30, 56, 412
BstV1I GCAGC 2 cut(s) 24, 232
BstV2I GAAGAC 1 cut(s) 391
BstZI CGGCCG 1 cut(s) 49
BsuRI GGCC 2 cut(s) 51, 209
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 37
CciI TCATGA 1 cut(s) 330
CfoI GCGC 1 cut(s) 37
Csp6I GTAC 3 cut(s) 304, 355, 379
CviAII CATG 4 cut(s) 267, 316, 331, 391
CviJI RGCY 7 cut(s) 18, 51, 100, 148, 209, 223, 340
CviKI_1 RGCY 7 cut(s) 18, 51, 100, 148, 209, 223, 340
CviQI GTAC 3 cut(s) 304, 355, 379
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 49, 207
EagI CGGCCG 1 cut(s) 49
EclXI CGGCCG 1 cut(s) 49
Eco52I CGGCCG 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 30, 412
FaeI CATG 4 cut(s) 270, 319, 334, 394
FaiI YATR 4 cut(s) 268, 317, 332, 392
FatI CATG 4 cut(s) 266, 315, 330, 390
Fnu4HI GCNGC 3 cut(s) 38, 221, 320
Fsp4HI GCNGC 3 cut(s) 38, 221, 320
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 38, 221, 320
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 2 cut(s) 51, 209
HapII CCGG 3 cut(s) 58, 240, 285
HhaI GCGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 270, 319, 334, 394
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 1 cut(s) 243
HpaII CCGG 3 cut(s) 58, 240, 285
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 131, 345
Hpy188III TCNNGA 2 cut(s) 285, 331
HpyAV CCTTC 2 cut(s) 51, 307
HpyCH4III ACNGT 3 cut(s) 127, 158, 282
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 206
Hsp92II CATG 4 cut(s) 270, 319, 334, 394
HspAI GCGC 1 cut(s) 35
Kpn2I TCCGGA 1 cut(s) 284
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 2 cut(s) 24, 232
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 5 cut(s) 57, 60, 181, 269, 391
MfeI CAATTG 1 cut(s) 150
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 150, 186
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 2 cut(s) 109, 175
MnlI CCTC 3 cut(s) 94, 126, 247
Mox20I TGGCCA 1 cut(s) 209
MroI TCCGGA 1 cut(s) 284
MscI TGGCCA 1 cut(s) 209
MseI TTAA 1 cut(s) 275
Msp20I TGGCCA 1 cut(s) 209
MspI CCGG 3 cut(s) 58, 240, 285
MspR9I CCNGG 3 cut(s) 32, 58, 414
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 2 cut(s) 32, 414
MwoI GCNNNNNNNGC 2 cut(s) 15, 206
NciI CCSGG 1 cut(s) 58
NdeII GATC 1 cut(s) 112
NlaIII CATG 4 cut(s) 270, 319, 334, 394
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 235
PagI TCATGA 1 cut(s) 330
PfeI GAWTC 1 cut(s) 243
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 3 cut(s) 39, 222, 321
Psp6I CCWGG 2 cut(s) 30, 412
PspGI CCWGG 2 cut(s) 30, 412
PsrI GAACNNNNNNTAC 2 cut(s) 371, 403
PstNI CAGNNNCTG 1 cut(s) 37
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 3 cut(s) 305, 356, 380
RsaNI GTAC 3 cut(s) 304, 355, 379
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 3 cut(s) 38, 221, 320
Sau3AI GATC 1 cut(s) 112
ScrFI CCNGG 3 cut(s) 32, 58, 414
SetI ASST 4 cut(s) 8, 20, 168, 353
SfaNI GCATC 1 cut(s) 144
Sse9I AATT 2 cut(s) 150, 186
SsiI CCGC 1 cut(s) 320
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 3 cut(s) 30, 56, 412
TaaI ACNGT 3 cut(s) 127, 158, 282
TaqI TCGA 2 cut(s) 111, 176
TasI AATT 2 cut(s) 150, 186
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 37, 220
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 347, 379
Tth111I GACNNNGTC 1 cut(s) 107
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.