Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011990

Physical Location & Seq

Genomic Coordinates Forward (+)

70691686 .. 70692603

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGCTGCTCATTCACCTCCCAAATCCCACAGGCTCTGCCTTCCCTCAACCGCCCTCGACGTGTAGCTTCTCCCACAATCACTATTAGTATCAGTCAGTCCCACGATGCAAAGCCTCAAAAGACATTCACAAGCATAATTCAAAACGACCTAAAGAAATTTGGTTCAGCAATTCAAGTTGGAGCAGCTTTGGCCACTATTGAGCTGCCTGCATTTGCTGTGACTGGTATGAACTATGAGGAAGATTTATCTTGGACTTTGATACAATCCGGAATCGTGGGCACCTGGTACTTCCTAATCATGCCGTGTACTTCTTTGGGCACCATTTCTGAACTTCAGGAAGTTCCCAAGGGATCCAAACATGAAGTATCCTTGGTCCAAGCCAGAAGATCCCAATCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0015979 GO:0016020 GO:0016043 GO:0019684 GO:0022607 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhL

Protein Analysis

134

Amino Acids

14.64

Weight (kDa)

9.1

Isoelectric Point (pI)

64.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70760
fragaria_vesca	FvH4_4g34090
malus_domestica	MD13G1021900.v1.1 MD16G1022900.v1.1
prunus_persica	Prupe.1G330000_v2.0.a1 Prupe.1G330000_v2.0.a1
pyrus_communis	pycom16g02020
rosa_chinensis	RchiOBHm_Chr4g0443591
rosa_laevigata	RLG00000005912
rosa_multiflora	Rmu_sc0011070.1_g000002 Rmu_sc0026347.1_g000005
rosa_roxburghii	Rroxscaffold_5G00384140
rosa_samantha	Rh4AG403300 Rh4AG405200 Rh4BG416200 Rh4CG430700 Rh4DG410600 Rh4DG411800
rosa_wichuraiana	Rw4G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	281, 320
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	3 cut(s)	348, 361, 384
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	290, 310
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	2 cut(s)	143, 176
AjiI	CACGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	4 cut(s)	6, 68, 188, 205
AluI	AGCT	4 cut(s)	6, 68, 188, 205
AlwI	GGATC	3 cut(s)	348, 361, 384
AlwNI	CAGNNNCTG	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	6, 185, 205
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	2 cut(s)	284, 323
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	353
BanI	GGYRCC	2 cut(s)	281, 320
BbvI	GCAGC	2 cut(s)	192, 197
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	286
BciVI	GTATCC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	3 cut(s)	7, 186, 206
BlsI	GCNGC	3 cut(s)	8, 187, 207
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	3 cut(s)	283, 322, 355
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	1 cut(s)	97
BsaBI	GATNNNNATC	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	348, 372
BsaWI	WCCGGW	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	394
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	348, 372
BseJI	GATNNNNATC	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	229
BseSI	GKGCMC	2 cut(s)	284, 323
BseXI	GCAGC	2 cut(s)	192, 197
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	2 cut(s)	281, 320
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	284, 323
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	353, 389
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	1 cut(s)	194
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	3 cut(s)	283, 322, 355
BspPI	GGATC	3 cut(s)	348, 361, 384
BspT107I	GGYRCC	2 cut(s)	281, 320
BsrI	ACTGG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	348, 372
BssMI	GATC	2 cut(s)	353, 389
BssT1I	CCWWGG	2 cut(s)	348, 372
Bst2UI	CCWGG	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	210
BstKTI	GATC	2 cut(s)	356, 392
BstMBI	GATC	2 cut(s)	353, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstSLI	GKGCMC	2 cut(s)	284, 323
BstV1I	GCAGC	2 cut(s)	192, 197
BstX2I	RGATCY	2 cut(s)	353, 389
BstYI	RGATCY	2 cut(s)	353, 389
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	194
BtrI	CACGTC	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	376
CsiI	ACCWGGT	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	289, 309
CviAII	CATG	2 cut(s)	301, 362
CviJI	RGCY	8 cut(s)	6, 35, 68, 115, 188, 194, 205, 383
CviKI_1	RGCY	8 cut(s)	6, 35, 68, 115, 188, 194, 205, 383
CviQI	GTAC	2 cut(s)	289, 309
DpnI	GATC	2 cut(s)	355, 391
DpnII	GATC	2 cut(s)	353, 389
EaeI	YGGCCR	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	348, 372
Eco47I	GGWCC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	2 cut(s)	348, 372
ErhI	CCWWGG	2 cut(s)	348, 372
FaeI	CATG	2 cut(s)	304, 365
FaiI	YATR	5 cut(s)	137, 230, 237, 302, 363
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	300, 361
Fnu4HI	GCNGC	3 cut(s)	7, 186, 206
Fsp4HI	GCNGC	3 cut(s)	7, 186, 206
GluI	GCNGC	3 cut(s)	7, 186, 206
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	2 cut(s)	304, 365
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	270, 338
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	110, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	304, 365
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	353, 389
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	8 cut(s)	17, 210, 222, 271, 283, 298, 323, 397
Lsp1109I	GCAGC	2 cut(s)	192, 197
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	284
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	2 cut(s)	355, 391
MboI	GATC	2 cut(s)	353, 389
MboII	GAAGA	2 cut(s)	254, 399
MflI	RGATCY	2 cut(s)	353, 389
MhlI	GDGCHC	2 cut(s)	284, 323
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	3 cut(s)	138, 158, 171
MluNI	TGGCCA	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	28, 56, 66, 126, 232
Mox20I	TGGCCA	1 cut(s)	194
MroI	TCCGGA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	403
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	2 cut(s)	353, 389
NlaIII	CATG	2 cut(s)	304, 365
NlaIV	GGNNCC	3 cut(s)	283, 322, 355
NmuCI	GTSAC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	8, 187, 207
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	3 cut(s)	283, 322, 355
PspPI	GGNCC	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	353, 389
RsaI	GTAC	2 cut(s)	290, 310
RsaNI	GTAC	2 cut(s)	289, 309
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	3 cut(s)	7, 186, 206
Sau3AI	GATC	2 cut(s)	353, 389
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	286
SduI	GDGCHC	2 cut(s)	284, 323
SetI	ASST	8 cut(s)	8, 20, 64, 70, 153, 190, 207, 287
SexAI	ACCWGGT	1 cut(s)	284
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	3 cut(s)	138, 158, 171
SsiI	CCGC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	2 cut(s)	348, 372
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	138, 158, 171
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	6, 185, 205
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	245, 378
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.