AT1G71080

ELL-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011867
Physical Location & Seq
Reverse (-)
26809720 .. 26811848
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71080.1

Sequence Viewer

Length: 981 bp
ATGTCGAATCACTCCAGAGATGAGCCTAGTACTGCCCCGAAGACAGATCAATGGTATGATCTTGTCCTTGGTTCCTCTGCCAAAGATGACTCCTCCCATAAATTCTGCACTTTGCGATATGAATTTAAGCCGGCTTCAATCGATAAGAACAGGTCAGGATCAATGCACAAGAAGAAGGATAACAGAGTTTCAGTTGAGTTTCAGAATAACCAACCAGGTAAACCCAAGGTGACATTTGAAGGTAGTAGTGAGGATTACAAAGAAAGCGATGCGGTGTTGTTTTTCGATGGGGAGAAGTTTCGTTTAGAGAGGTTGCATCGGGCTGTTACGCAGCTGCGACATGTTAGGACACCTGGTGAATCTGCTGCGGCTTCTCAATCTGCGGTGCCTGTGGAGCATCGGTTATCTCCTGTTGGTCGTGCTGCTAAATCTCCACAAGTCAATAGAAGTTTGCTTCCTGATGTGCCTGTTGAGGTGGAAAGAATCGAAATTGGGAAGCCAGAGAACTCAGCTGAACCTGCCAACACTGGAAACGTGCCTGCAACCTCACCAGTCGAGGACAAGAACGATGATGGAGATGAGCATCAAGAGATCGATCTGGTTGAAATATTTGGCTCATTTACACCAGAGAACGACAATGCAGAGAAAGAGAACGCTGATGGTGGAGAATATGTAGAAAGCTTAAATAAACAGCTTAGCATGACGGAAGAAGAGATTGCAGATGTAGATGACGATAGCGGCGGTGAAGGAGAAAAAGGTCTTAACGCAGCAGAAGCACTTAGAGCACAAGTGAACGCAGAGGTGCAAAAGAGTCAAACCTCAAGCTCAAGCAGTAGCAGTGGAAGTAGCAGCGGAAGTGACAGTGATGGTCGTAGCAAAAGCGTAAGCAGCGGAAGTGGCAGCGGCGGCCAAAGCAGTAGTGGAAGCAGTAGCCGTGGAAGTGGAGGAAGTGACGATGAAGATGAAGTCAACTCCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAF

Protein Analysis

326

Amino Acids

34.83

Weight (kDa)

4.68

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAF PF09816 19 - 118 9.9e-24 RNA polymerase II transcription elongation factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71080
fragaria_vesca FvH4_4g32210 FvH4_4g32210 FvH4_7g01202
malus_domestica MD13G1027200.v1.1 MD16G1030300.v1.1
prunus_persica Prupe.1G322700_v2.0.a1
pyrus_communis pycom13g02590 pycom16g02580
rosa_chinensis RchiOBHm_Chr4g0440951
rosa_laevigata RLG00000006137
rosa_multiflora Rmu_sc0000424.1_g000025
rosa_roxburghii Rroxscaffold_5G00381810
rosa_rugosa Rorug04G0329600
rosa_samantha Rh4AG381400 Rh4BG394600 Rh4CG409500 Rh4DG387900
rosa_wichuraiana Rw4G032850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 526
AccB1I GGYRCC 1 cut(s) 385
AciI CCGC 9 cut(s) 272, 368, 383, 738, 741, 852, 891, 903, 906
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 907
AcsI RAATTY 2 cut(s) 101, 122
AdeI CACNNNGTG 1 cut(s) 356
AfaI GTAC 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 3 cut(s) 138, 239, 605
AjnI CCWGG 2 cut(s) 214, 352
AluBI AGCT 5 cut(s) 334, 512, 681, 694, 825
AluI AGCT 5 cut(s) 334, 512, 681, 694, 825
Alw21I GWGCWC 1 cut(s) 787
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 907
ApeKI GCWGC 8 cut(s) 331, 334, 365, 422, 767, 849, 888, 900
ApoI RAATTY 2 cut(s) 101, 122
AsuHPI GGTGA 4 cut(s) 241, 368, 540, 755
BanI GGYRCC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 8 cut(s) 321, 343, 352, 409, 779, 861, 900, 912
BccI CCATC 4 cut(s) 281, 566, 653, 860
BceAI ACGGC 1 cut(s) 918
BciT130I CCWGG 2 cut(s) 216, 354
BfaI CTAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 526
BlpI GCTNAGC 1 cut(s) 695
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 216, 354
BmiI GGNNCC 2 cut(s) 73, 387
BmrFI CCNGG 2 cut(s) 216, 354
BmsI GCATC 4 cut(s) 259, 325, 406, 592
BpiI GAAGAC 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 695
BpuEI CTTGAG 2 cut(s) 805, 811
Bsa29I ATCGAT 2 cut(s) 141, 594
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 3 cut(s) 67, 225, 934
BsaXI ACNNNNNCTCC 4 cut(s) 386, 416, 657, 687
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 532, 551
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 2 cut(s) 216, 354
BseCI ATCGAT 2 cut(s) 141, 594
BseDI CCNNGG 3 cut(s) 67, 225, 934
BseJI GATNNNNATC 1 cut(s) 582
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 532, 551
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 8 cut(s) 321, 343, 352, 409, 779, 861, 900, 912
BsgI GTGCAG 1 cut(s) 91
BshFI GGCC 1 cut(s) 909
BshNI GGYRCC 1 cut(s) 385
BshVI ATCGAT 2 cut(s) 141, 594
BsiHKAI GWGCWC 1 cut(s) 787
BsiSI CCGG 1 cut(s) 131
BsnI GGCC 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 787
Bsp143I GATC 5 cut(s) 46, 58, 158, 591, 595
Bsp1720I GCTNAGC 1 cut(s) 695
BspACI CCGC 9 cut(s) 272, 368, 383, 738, 741, 852, 891, 903, 906
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 1 cut(s) 521
BspDI ATCGAT 2 cut(s) 141, 594
BspLI GGNNCC 2 cut(s) 73, 387
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 2 cut(s) 532, 551
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 3 cut(s) 67, 225, 934
BssMI GATC 5 cut(s) 46, 58, 158, 591, 595
BssT1I CCWWGG 2 cut(s) 67, 225
Bst2UI CCWGG 2 cut(s) 216, 354
Bst4CI ACNGT 1 cut(s) 863
Bst6I CTCTTC 1 cut(s) 705
BstC8I GCNNGC 2 cut(s) 132, 540
BstDEI CTNAG 3 cut(s) 508, 695, 779
BstDSI CCRYGG 1 cut(s) 934
BstKTI GATC 5 cut(s) 49, 61, 161, 594, 598
BstMBI GATC 5 cut(s) 46, 58, 158, 591, 595
BstMWI GCNNNNNNNGC 8 cut(s) 394, 518, 773, 782, 888, 897, 906, 912
BstNI CCWGG 2 cut(s) 216, 354
BstNSI RCATGY 1 cut(s) 344
BstSCI CCNGG 2 cut(s) 214, 352
BstV1I GCAGC 8 cut(s) 321, 343, 352, 409, 779, 861, 900, 912
BstV2I GAAGAC 1 cut(s) 47
Bsu15I ATCGAT 2 cut(s) 141, 594
BsuRI GGCC 1 cut(s) 909
BsuTUI ATCGAT 2 cut(s) 141, 594
BtgI CCRYGG 1 cut(s) 934
BtgZI GCGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 844
BtsIMutI CAGTG 3 cut(s) 525, 844, 868
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 132, 540
Cfr10I RCCGGY 1 cut(s) 130
ClaI ATCGAT 2 cut(s) 141, 594
CsiI ACCWGGT 2 cut(s) 214, 352
Csp6I GTAC 1 cut(s) 30
CviAII CATG 2 cut(s) 341, 700
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 3 cut(s) 508, 695, 779
DpnI GATC 5 cut(s) 48, 60, 160, 593, 597
DpnII GATC 5 cut(s) 46, 58, 158, 591, 595
DraIII CACNNNGTG 1 cut(s) 356
EaeI YGGCCR 1 cut(s) 907
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Eco130I CCWWGG 2 cut(s) 67, 225
EcoRII CCWGG 2 cut(s) 214, 352
EcoT14I CCWWGG 2 cut(s) 67, 225
ErhI CCWWGG 2 cut(s) 67, 225
FaeI CATG 2 cut(s) 344, 703
FaiI YATR 7 cut(s) 57, 99, 120, 342, 672, 701, 979
FatI CATG 2 cut(s) 340, 699
FspBI CTAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 909
HapII CCGG 1 cut(s) 131
Hin1II CATG 2 cut(s) 344, 703
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HindIII AAGCTT 1 cut(s) 679
HinfI GANTC 5 cut(s) 7, 89, 359, 483, 811
HpaII CCGG 1 cut(s) 131
HphI GGTGA 4 cut(s) 241, 368, 540, 755
Hpy166II GTNNAC 3 cut(s) 221, 793, 970
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 4 cut(s) 15, 156, 458, 587
Hpy8I GTNNAC 3 cut(s) 221, 793, 970
HpyAV CCTTC 3 cut(s) 169, 233, 740
HpyCH4III ACNGT 1 cut(s) 863
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 7 cut(s) 108, 166, 316, 542, 641, 719, 805
HpyF10VI GCNNNNNNNGC 8 cut(s) 394, 518, 773, 782, 888, 897, 906, 912
HpyF3I CTNAG 3 cut(s) 508, 695, 779
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 2 cut(s) 344, 703
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 5 cut(s) 46, 58, 158, 591, 595
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 8 cut(s) 321, 343, 352, 409, 779, 861, 900, 912
LweI GCATC 4 cut(s) 259, 325, 406, 592
MabI ACCWGGT 2 cut(s) 214, 352
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 4 cut(s) 229, 325, 857, 950
MalI GATC 5 cut(s) 48, 60, 160, 593, 597
MboI GATC 5 cut(s) 46, 58, 158, 591, 595
MboII GAAGA 5 cut(s) 52, 184, 719, 722, 971
MhlI GDGCHC 1 cut(s) 787
MluCI AATT 3 cut(s) 101, 122, 489
MlyI GAGTC 2 cut(s) 83, 820
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 3 cut(s) 126, 683, 762
MspA1I CMGCKG 5 cut(s) 334, 512, 852, 891, 903
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 216, 354
MvaI CCWGG 2 cut(s) 216, 354
MwoI GCNNNNNNNGC 8 cut(s) 394, 518, 773, 782, 888, 897, 906, 912
NaeI GCCGGC 1 cut(s) 132
NdeII GATC 5 cut(s) 46, 58, 158, 591, 595
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 344, 703
NlaIV GGNNCC 2 cut(s) 73, 387
NmuCI GTSAC 3 cut(s) 229, 857, 950
NspI RCATGY 1 cut(s) 344
PciI ACATGT 1 cut(s) 340
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 7, 359, 483
PleI GAGTC 2 cut(s) 83, 819
PpsI GAGTC 2 cut(s) 83, 819
PscI ACATGT 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 214, 352
PspGI CCWGG 2 cut(s) 214, 352
PspN4I GGNNCC 2 cut(s) 73, 387
PvuII CAGCTG 2 cut(s) 334, 512
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 3 cut(s) 126, 683, 762
Sau3AI GATC 5 cut(s) 46, 58, 158, 591, 595
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 2 cut(s) 83, 820
ScrFI CCNGG 2 cut(s) 216, 354
SduI GDGCHC 1 cut(s) 787
SexAI ACCWGGT 2 cut(s) 214, 352
SfaNI GCATC 4 cut(s) 259, 325, 406, 592
SmlI CTYRAG 2 cut(s) 820, 826
SmoI CTYRAG 2 cut(s) 820, 826
Sse9I AATT 3 cut(s) 101, 122, 489
SsiI CCGC 9 cut(s) 272, 368, 383, 738, 741, 852, 891, 903, 906
SspI AATATT 1 cut(s) 609
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 214, 352
StyI CCWWGG 2 cut(s) 67, 225
TaaI ACNGT 1 cut(s) 863
TaiI ACGT 1 cut(s) 537
TaqI TCGA 6 cut(s) 5, 141, 285, 486, 555, 594
TasI AATT 3 cut(s) 101, 122, 489
TatI WGTACW 1 cut(s) 29
TauI GCSGC 4 cut(s) 371, 741, 906, 909
TfiI GAWTC 3 cut(s) 7, 359, 483
Tru1I TTAA 3 cut(s) 126, 683, 762
Tru9I TTAA 3 cut(s) 126, 683, 762
TscAI CASTG 3 cut(s) 532, 844, 868
TseFI GTSAC 3 cut(s) 229, 857, 950
TseI GCWGC 8 cut(s) 331, 334, 365, 422, 767, 849, 888, 900
Tsp45I GTSAC 3 cut(s) 229, 857, 950
TspDTI ATGAA 3 cut(s) 135, 972, 978
TspGWI ACGGA 2 cut(s) 719, 964
TspRI CASTG 3 cut(s) 532, 844, 868
XapI RAATTY 2 cut(s) 101, 122
XceI RCATGY 1 cut(s) 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XspI CTAG 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.