FvH4_4g32210

ELL-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011867
Physical Location & Seq
Forward (+)
30957837 .. 30960862
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32210.t2

Sequence Viewer

Length: 945 bp
ATGGCAAGTAACGCCAAGGAAGAGCCCAAAACCGCTCCTCAACCCGATCGGTGGTACAACCTAACCCTAGGCCCCTCCTTCAAAGACGAGTCCTCCAGCAAGTTCTGCACCCTACGATATGAATTCAAGCCGGCGTCGATTGACAAGACGAAGCCGGGGTCGCTGAAGAAGACCAAGGACAACAGAGTCACGGTGGAGTTTCAGAACAACCAGTTAGGGAAGCCTAACGTGTTGTTTAAAGGGAATAGCGAGGATTATAAAGACAACGACGCCGTTTTGTTTTTCGACGGCCAGACTTTCCGGCTTGAGAGGCTTCACAGGGCGGTGAAGCAGCTCCGCCATGACCGCCAGCCTGGGGAATCCGTCGGGATTCCTCTCGAGCCGCAGCTGTCCCCGCCGCCCGGCAAGGTCGCCAAGACAATGCATCCTTCTAGGAATTCATTCCCTGCTGTGCCGGTTGAGGTGGAACGAATTGATATTGGCGTACCCGAGAATTCAGGTACAAAATCTGCAAGTAAAGGTGTGGCTGATCACTCATATGATCAACCAAATGTCTCTGCTGCTTCGCCAGACCCCAAGGATGATGAAGTTGAGGAACATCAAGATATAGATATTGATGAACTTTTTGGTAGTGGATCACCCGAAGATGGAAATGCCGCTGCTGAAGATAAATCCAATGCTGAATTCGATGTCAATATGCCTCATCAGAACGAGATTGATGATGAGATTGCTGATGTAGATGTTAGTGGCGATGAAGTTGATAAGGGCCCAAATGCTGCAGAAGCCCTTCGAGCTCAGGTGAATGCGGAGGAGAGTCACGAGCAGACTTCTTCTTCTAGTAGTAGCAGTGGAAGTGGGAGTAGCAGCGGAAGTGGTAGCGCAACCAGCAGCAGTAGCAGTGACAGCGAAGCCAGCGATGACGATTCTGCAGTAAACTCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAF

Protein Analysis

315

Amino Acids

33.75

Weight (kDa)

4.56

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAF PF09816 19 - 145 5.3e-18 RNA polymerase II transcription elongation factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71080
fragaria_vesca FvH4_4g32210 FvH4_4g32210 FvH4_7g01202
malus_domestica MD13G1027200.v1.1 MD16G1030300.v1.1
prunus_persica Prupe.1G322700_v2.0.a1
pyrus_communis pycom13g02590 pycom16g02580
rosa_chinensis RchiOBHm_Chr4g0440951
rosa_laevigata RLG00000006137
rosa_multiflora Rmu_sc0000424.1_g000025
rosa_roxburghii Rroxscaffold_5G00381810
rosa_rugosa Rorug04G0329600
rosa_samantha Rh4AG381400 Rh4BG394600 Rh4CG409500 Rh4DG387900
rosa_wichuraiana Rw4G032850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AasI GACNNNNNNGTC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 35
AclWI GGATC 1 cut(s) 643
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 4 cut(s) 122, 436, 493, 683
AcuI CTGAAG 2 cut(s) 185, 684
AcyI GRCGYC 2 cut(s) 134, 270
AfaI GTAC 3 cut(s) 56, 486, 502
AfiI CCNNNNNNNGG 4 cut(s) 51, 355, 401, 647
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 2 cut(s) 82, 127
AjnI CCWGG 1 cut(s) 352
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 3 cut(s) 334, 388, 794
AluI AGCT 3 cut(s) 334, 388, 794
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 1 cut(s) 559
AlwI GGATC 1 cut(s) 643
Ama87I CYCGRG 2 cut(s) 377, 488
AoxI GGCC 3 cut(s) 70, 289, 766
ApaI GGGCCC 1 cut(s) 770
ApeKI GCWGC 7 cut(s) 331, 385, 560, 659, 776, 864, 888
ApoI RAATTY 4 cut(s) 122, 436, 493, 683
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 2 cut(s) 440, 786
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 3 cut(s) 71, 766, 767
AsuC2I CCSGG 2 cut(s) 156, 402
AsuHPI GGTGA 3 cut(s) 337, 630, 811
AvaI CYCGRG 2 cut(s) 377, 488
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 770
BanII GRGCYC 3 cut(s) 27, 770, 796
BauI CACGAG 1 cut(s) 818
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 796
BbvI GCAGC 7 cut(s) 343, 397, 547, 646, 763, 876, 900
BccI CCATC 1 cut(s) 641
BceAI ACGGC 2 cut(s) 257, 304
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 2 cut(s) 529, 541
BcnI CCSGG 2 cut(s) 156, 402
BcoDI GTCTC 1 cut(s) 559
BfaI CTAG 3 cut(s) 68, 432, 837
BfmI CTRYAG 2 cut(s) 777, 927
BlnI CCTAGG 1 cut(s) 67
Bme1390I CCNGG 3 cut(s) 156, 354, 402
BmeT110I CYCGRG 2 cut(s) 377, 488
BmgT120I GGNCC 3 cut(s) 71, 766, 767
BmiI GGNNCC 2 cut(s) 73, 768
BmrFI CCNGG 3 cut(s) 156, 354, 402
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 2 cut(s) 156, 402
BsaHI GRCGYC 2 cut(s) 134, 270
BsaJI CCNNGG 6 cut(s) 15, 67, 155, 174, 353, 576
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 355, 401, 647
Bse118I RCCGGY 2 cut(s) 130, 454
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 6 cut(s) 15, 67, 155, 174, 353, 576
BseGI GGATG 2 cut(s) 424, 586
BseLI CCNNNNNNNGG 4 cut(s) 51, 355, 401, 647
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 2 cut(s) 27, 824
BseSI GKGCMC 1 cut(s) 770
BseXI GCAGC 7 cut(s) 343, 397, 547, 646, 763, 876, 900
BsgI GTGCAG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 72, 291, 768
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 796
BsiHKCI CYCGRG 2 cut(s) 377, 488
BsiSI CCGG 5 cut(s) 131, 155, 301, 402, 455
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 4 cut(s) 51, 355, 401, 647
BsmAI GTCTC 1 cut(s) 559
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 3 cut(s) 72, 291, 768
BsoBI CYCGRG 2 cut(s) 377, 488
Bsp120I GGGCCC 1 cut(s) 766
Bsp1286I GDGCHC 3 cut(s) 27, 770, 796
Bsp143I GATC 4 cut(s) 46, 529, 541, 635
BspANI GGCC 3 cut(s) 72, 291, 768
BspCNI CTCAG 1 cut(s) 808
BspLI GGNNCC 2 cut(s) 73, 768
BspMAI CTGCAG 2 cut(s) 781, 931
BspPI GGATC 1 cut(s) 643
BspQI GCTCTTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 2 cut(s) 130, 454
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 2 cut(s) 130, 454
BssECI CCNNGG 6 cut(s) 15, 67, 155, 174, 353, 576
BssMI GATC 4 cut(s) 46, 529, 541, 635
BssNI GRCGYC 2 cut(s) 134, 270
BssSI CACGAG 1 cut(s) 818
BssT1I CCWWGG 4 cut(s) 15, 67, 174, 576
Bst2BI CACGAG 1 cut(s) 818
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 2 cut(s) 134, 270
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 132, 350, 913
BstDEI CTNAG 1 cut(s) 795
BstF5I GGATG 2 cut(s) 424, 586
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 4 cut(s) 49, 532, 544, 638
BstMAI GTCTC 1 cut(s) 559
BstMBI GATC 4 cut(s) 46, 529, 541, 635
BstMCI CGRYCG 1 cut(s) 49
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 3 cut(s) 154, 352, 400
BstSFI CTRYAG 2 cut(s) 777, 927
BstSLI GKGCMC 1 cut(s) 770
BstV1I GCAGC 7 cut(s) 343, 397, 547, 646, 763, 876, 900
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 3 cut(s) 72, 291, 768
BtgZI GCGATG 2 cut(s) 765, 930
BtsCI GGATG 2 cut(s) 424, 586
BtsI GCAGTG 2 cut(s) 853, 904
BtsIMutI CAGTG 2 cut(s) 853, 904
Cac8I GCNNGC 3 cut(s) 132, 350, 913
CfoI GCGC 1 cut(s) 881
Cfr10I RCCGGY 2 cut(s) 130, 454
Cfr13I GGNCC 3 cut(s) 71, 766, 767
CseI GACGC 2 cut(s) 123, 278
Csp6I GTAC 3 cut(s) 55, 485, 501
CviAII CATG 1 cut(s) 341
CviQI GTAC 3 cut(s) 55, 485, 501
DdeI CTNAG 1 cut(s) 795
DpnI GATC 4 cut(s) 48, 531, 543, 637
DpnII GATC 4 cut(s) 46, 529, 541, 635
DraI TTTAAA 1 cut(s) 238
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 794
Eco130I CCWWGG 4 cut(s) 15, 67, 174, 576
Eco24I GRGCYC 3 cut(s) 27, 770, 796
Eco53kI GAGCTC 1 cut(s) 794
Eco57I CTGAAG 2 cut(s) 185, 684
Eco88I CYCGRG 2 cut(s) 377, 488
EcoICRI GAGCTC 1 cut(s) 794
EcoO109I RGGNCCY 2 cut(s) 71, 766
EcoRI GAATTC 4 cut(s) 122, 436, 493, 683
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 4 cut(s) 15, 67, 174, 576
EcoT22I ATGCAT 1 cut(s) 426
EcoT38I GRGCYC 3 cut(s) 27, 770, 796
ErhI CCWWGG 4 cut(s) 15, 67, 174, 576
FaeI CATG 1 cut(s) 344
FaiI YATR 7 cut(s) 120, 258, 342, 538, 540, 608, 698
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 340
FauI CCCGC 1 cut(s) 402
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 2 cut(s) 529, 541
FokI GGATG 2 cut(s) 411, 593
FriOI GRGCYC 3 cut(s) 27, 770, 796
FspBI CTAG 3 cut(s) 68, 432, 837
GlaI GCGC 1 cut(s) 880
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 3 cut(s) 72, 291, 768
HapII CCGG 5 cut(s) 131, 155, 301, 402, 455
HgaI GACGC 2 cut(s) 123, 278
HhaI GCGC 1 cut(s) 881
Hin1I GRCGYC 2 cut(s) 134, 270
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HinfI GANTC 6 cut(s) 89, 186, 359, 370, 814, 923
HpaII CCGG 5 cut(s) 131, 155, 301, 402, 455
HphI GGTGA 3 cut(s) 337, 630, 811
Hpy166II GTNNAC 1 cut(s) 934
Hpy188I TCNGA 2 cut(s) 204, 708
Hpy188III TCNNGA 4 cut(s) 367, 377, 602, 818
Hpy8I GTNNAC 1 cut(s) 934
Hpy99I CGWCG 4 cut(s) 139, 272, 290, 368
HpyAV CCTTC 3 cut(s) 88, 438, 797
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 5 cut(s) 108, 424, 512, 779, 929
HpyF3I CTNAG 1 cut(s) 795
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 2 cut(s) 134, 270
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 879
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 2 cut(s) 529, 541
Kzo9I GATC 4 cut(s) 46, 529, 541, 635
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 40, 339
Lsp1109I GCAGC 7 cut(s) 343, 397, 547, 646, 763, 876, 900
LweI GCATC 1 cut(s) 433
MaeI CTAG 3 cut(s) 68, 432, 837
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 4 cut(s) 8, 187, 815, 899
MalI GATC 4 cut(s) 48, 531, 543, 637
MbiI CCGCTC 1 cut(s) 35
MboI GATC 4 cut(s) 46, 529, 541, 635
MboII GAAGA 7 cut(s) 32, 178, 181, 656, 677, 822, 825
MhlI GDGCHC 3 cut(s) 27, 770, 796
MluCI AATT 5 cut(s) 122, 436, 471, 493, 683
MlyI GAGTC 3 cut(s) 98, 195, 823
Mph1103I ATGCAT 1 cut(s) 426
MroNI GCCGGC 1 cut(s) 130
MroXI GAANNNNTTC 2 cut(s) 440, 786
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 3 cut(s) 388, 659, 867
MspI CCGG 5 cut(s) 131, 155, 301, 402, 455
MspR9I CCNGG 3 cut(s) 156, 354, 402
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 1 cut(s) 354
NaeI GCCGGC 1 cut(s) 132
NciI CCSGG 2 cut(s) 156, 402
NdeI CATATG 1 cut(s) 538
NdeII GATC 4 cut(s) 46, 529, 541, 635
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 2 cut(s) 73, 768
NmuCI GTSAC 3 cut(s) 187, 815, 899
NsiI ATGCAT 1 cut(s) 426
PaeR7I CTCGAG 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 1 cut(s) 808
PdiI GCCGGC 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 440, 786
PfeI GAWTC 3 cut(s) 359, 370, 923
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 3 cut(s) 97, 194, 822
PpsI GAGTC 3 cut(s) 97, 194, 822
PsiI TTATAA 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 796
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 73, 768
PspOMI GGGCCC 1 cut(s) 766
PspPI GGNCC 3 cut(s) 71, 766, 767
PstI CTGCAG 2 cut(s) 781, 931
PvuI CGATCG 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 388
RsaI GTAC 3 cut(s) 56, 486, 502
RsaNI GTAC 3 cut(s) 55, 485, 501
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 796
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 4 cut(s) 46, 529, 541, 635
Sau96I GGNCC 3 cut(s) 71, 766, 767
SchI GAGTC 3 cut(s) 98, 195, 823
ScrFI CCNGG 3 cut(s) 156, 354, 402
SduI GDGCHC 3 cut(s) 27, 770, 796
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 2 cut(s) 777, 927
Sfr274I CTCGAG 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 2 cut(s) 305, 377
SmoI CTYRAG 2 cut(s) 305, 377
Sse9I AATT 5 cut(s) 122, 436, 471, 493, 683
SspMI CTAG 3 cut(s) 68, 432, 837
SstI GAGCTC 1 cut(s) 796
StyD4I CCNGG 3 cut(s) 154, 352, 400
StyI CCWWGG 4 cut(s) 15, 67, 174, 576
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 231
TaqI TCGA 5 cut(s) 137, 285, 378, 687, 790
TasI AATT 5 cut(s) 122, 436, 471, 493, 683
TauI GCSGC 3 cut(s) 385, 400, 659
TfiI GAWTC 3 cut(s) 359, 370, 923
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 853, 904
TseFI GTSAC 3 cut(s) 187, 815, 899
TseI GCWGC 7 cut(s) 331, 385, 560, 659, 776, 864, 888
Tsp45I GTSAC 3 cut(s) 187, 815, 899
TspDTI ATGAA 5 cut(s) 135, 429, 600, 633, 768
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 2 cut(s) 853, 904
XapI RAATTY 4 cut(s) 122, 436, 493, 683
XhoI CTCGAG 1 cut(s) 377
XmaJI CCTAGG 1 cut(s) 67
XmnI GAANNNNTTC 2 cut(s) 440, 786
XspI CTAG 3 cut(s) 68, 432, 837
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.