Prupe.1G322700_v2.0.a1

ELL-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011867
Physical Location & Seq
Forward (+)
30840722 .. 30843593
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G322700.1

Sequence Viewer

Length: 960 bp
ATGGCGAATAACTCCAAGGAAGAGCCCAAGACCGGTCCTCAGCCCGATCTCTGGTACAACCTAACCCTTGGCCCTTCCTTCAAAGACGACTCATCCAACAAGTACTGCACTCTGCGATACGAATTTAAACCGGCGTCGATTGACAAGACGAAGCCGGGGACGCTCAAGAAAACGAAGGAAAATAGGGTTACGGTGGAATTTCAGAACAACCAATTGGGGAAACCGAATGTGACCTTCAAGGGAAGCAGCGAGGACTACAAGGACAACGACGCCGTATTGTTCTTCGACGGCCAGACGTTTCGGTTGGAGAGGCTTCACCGGGCCGTGAAGCAGCTCCGGCATGATCGTCAGCCCGGTGAATCGGCGGCTGGTGCCGCTCAATCGGGGTCCGCCGTGGAGCCGCAGCTGTCTCCGGTCAGCAAGGCCCCCAAGCCAATACATCATCCTGGTAGAACTGCATTCCCTGCTGTGCAGGTTGAGGTGGAACGAATAGATGTTGGAATACCTGGGAATCCAGGTGCAAAGAGTGCCAATAAAGGTGTGGTTGATTACTCATCTGATCAACTGAATGTCTCTGCTGCCTCACCGGACCCTAAGAATGAGGAGGTCGAGGAACATCAAGATATAGATATTGAAGAACTTTTCGGCAGTGTATCGCCTGAAAACGGGAATGCTGCGGAAGATGGAGCTAATGCTGGGTTTGATATCAGTATGCGAAATCAAAATGAAAGTGATAATGAGATTGCTGATGTGGATGATAGTGGTGATGAAGTTGATAAGGGGCCAAATGCCGCAGAAGCCCTTCGAGCCCAGGTGAACGCAGAGGGGAGGGAAAAGCAGACTTCTACTTCCGGTAGTAGCAGTGGAAGTGGGAGCAGCAGCAGTGGAAGTGGCAGTGGTAGCAGCAGCAGCAGCAGCGATAATGAAGGCAGTGATGATGATTCAGTCAACTCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAF

Protein Analysis

320

Amino Acids

33.92

Weight (kDa)

4.66

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71080
fragaria_vesca FvH4_4g32210 FvH4_4g32210 FvH4_7g01202
malus_domestica MD13G1027200.v1.1 MD16G1030300.v1.1
prunus_persica Prupe.1G322700_v2.0.a1
pyrus_communis pycom13g02590 pycom16g02580
rosa_chinensis RchiOBHm_Chr4g0440951
rosa_laevigata RLG00000006137
rosa_multiflora Rmu_sc0000424.1_g000025
rosa_roxburghii Rroxscaffold_5G00381810
rosa_rugosa Rorug04G0329600
rosa_samantha Rh4AG381400 Rh4BG394600 Rh4CG409500 Rh4DG387900
rosa_wichuraiana Rw4G032850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 377
AciI CCGC 6 cut(s) 365, 375, 390, 401, 677, 792
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 122, 197
AcyI GRCGYC 2 cut(s) 134, 270
AfaI GTAC 2 cut(s) 56, 104
AfiI CCNNNNNNNGG 3 cut(s) 32, 51, 665
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 3 cut(s) 82, 238, 635
AjnI CCWGG 4 cut(s) 445, 505, 514, 810
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 3 cut(s) 334, 406, 689
AluI AGCT 3 cut(s) 334, 406, 689
Alw26I GTCTC 2 cut(s) 414, 577
AoxI GGCC 5 cut(s) 70, 289, 321, 423, 782
ApoI RAATTY 2 cut(s) 122, 197
AsiGI ACCGGT 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 801
AspS9I GGNCC 7 cut(s) 35, 71, 321, 387, 424, 589, 782
AsuC2I CCSGG 3 cut(s) 156, 320, 354
AsuHPI GGTGA 5 cut(s) 308, 368, 576, 776, 826
AvaII GGWCC 3 cut(s) 35, 387, 589
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 2 cut(s) 27, 811
BbvCI CCTCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 677
BceAI ACGGC 4 cut(s) 257, 304, 308, 377
BciT130I CCWGG 4 cut(s) 447, 507, 516, 812
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 3 cut(s) 156, 320, 354
BcoDI GTCTC 2 cut(s) 414, 577
BfuAI ACCTGC 1 cut(s) 463
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 7 cut(s) 156, 320, 354, 447, 507, 516, 812
Bme18I GGWCC 3 cut(s) 35, 387, 589
BmgT120I GGNCC 7 cut(s) 35, 71, 321, 387, 424, 589, 782
BmiI GGNNCC 6 cut(s) 373, 388, 399, 426, 591, 783
BmrFI CCNGG 7 cut(s) 156, 320, 354, 447, 507, 516, 812
Bpu10I CCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 3 cut(s) 156, 320, 354
BsaHI GRCGYC 2 cut(s) 134, 270
BsaJI CCNNGG 6 cut(s) 15, 67, 155, 393, 506, 810
BsaWI WCCGGW 4 cut(s) 32, 412, 586, 851
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 51, 665
Bse118I RCCGGY 2 cut(s) 32, 130
BseBI CCWGG 4 cut(s) 447, 507, 516, 812
BseDI CCNNGG 6 cut(s) 15, 67, 155, 393, 506, 810
BseGI GGATG 3 cut(s) 92, 442, 760
BseLI CCNNNNNNNGG 3 cut(s) 32, 51, 665
BseMII CTCAG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 617
BseYI CCCAGC 1 cut(s) 695
BsgI GTGCAG 2 cut(s) 91, 491
BshFI GGCC 5 cut(s) 72, 291, 323, 425, 784
BshNI GGYRCC 1 cut(s) 371
BshTI ACCGGT 1 cut(s) 32
BsiSI CCGG 9 cut(s) 33, 131, 155, 319, 337, 354, 413, 587, 852
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 3 cut(s) 32, 51, 665
BsmAI GTCTC 2 cut(s) 414, 577
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 2 cut(s) 458, 676
BsnI GGCC 5 cut(s) 72, 291, 323, 425, 784
Bsp1286I GDGCHC 2 cut(s) 27, 811
Bsp143I GATC 3 cut(s) 46, 343, 559
BspACI CCGC 6 cut(s) 365, 375, 390, 401, 677, 792
BspANI GGCC 5 cut(s) 72, 291, 323, 425, 784
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 6 cut(s) 373, 388, 399, 426, 591, 783
BspMI ACCTGC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 377
BsrFI RCCGGY 2 cut(s) 32, 130
BssAI RCCGGY 2 cut(s) 32, 130
BssECI CCNNGG 6 cut(s) 15, 67, 155, 393, 506, 810
BssMI GATC 3 cut(s) 46, 343, 559
BssNI GRCGYC 2 cut(s) 134, 270
BssT1I CCWWGG 2 cut(s) 15, 67
Bst2UI CCWGG 4 cut(s) 447, 507, 516, 812
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 2 cut(s) 134, 270
BstAPI GCANNNNNTGC 2 cut(s) 464, 527
BstDEI CTNAG 2 cut(s) 39, 594
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 92, 442, 760
BstKTI GATC 3 cut(s) 49, 346, 562
BstMAI GTCTC 2 cut(s) 414, 577
BstMBI GATC 3 cut(s) 46, 343, 559
BstNI CCWGG 4 cut(s) 447, 507, 516, 812
BstSCI CCNGG 7 cut(s) 154, 318, 352, 445, 505, 514, 810
BsuRI GGCC 5 cut(s) 72, 291, 323, 425, 784
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 92, 442, 760
BtsI GCAGTG 5 cut(s) 655, 868, 889, 901, 937
BtsIMutI CAGTG 5 cut(s) 655, 868, 889, 901, 937
BveI ACCTGC 1 cut(s) 463
Cfr10I RCCGGY 2 cut(s) 32, 130
Cfr13I GGNCC 7 cut(s) 35, 71, 321, 387, 424, 589, 782
CseI GACGC 3 cut(s) 123, 169, 278
Csp6I GTAC 2 cut(s) 55, 103
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 55, 103
DdeI CTNAG 2 cut(s) 39, 594
DpnI GATC 3 cut(s) 48, 345, 561
DpnII GATC 3 cut(s) 46, 343, 559
DraI TTTAAA 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 379
Eco130I CCWWGG 2 cut(s) 15, 67
Eco24I GRGCYC 2 cut(s) 27, 811
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 3 cut(s) 35, 387, 589
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 4 cut(s) 445, 505, 514, 810
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 2 cut(s) 15, 67
EcoT38I GRGCYC 2 cut(s) 27, 811
ErhI CCWWGG 2 cut(s) 15, 67
FaeI CATG 1 cut(s) 344
FaiI YATR 3 cut(s) 342, 626, 713
FaqI GGGAC 1 cut(s) 172
FatI CATG 1 cut(s) 340
FbaI TGATCA 1 cut(s) 559
FokI GGATG 3 cut(s) 79, 429, 767
FriOI GRGCYC 2 cut(s) 27, 811
GsaI CCCAGC 1 cut(s) 699
HaeIII GGCC 5 cut(s) 72, 291, 323, 425, 784
HapII CCGG 9 cut(s) 33, 131, 155, 319, 337, 354, 413, 587, 852
HgaI GACGC 3 cut(s) 123, 169, 278
Hin1I GRCGYC 2 cut(s) 134, 270
Hin1II CATG 1 cut(s) 344
HincII GTYRAC 1 cut(s) 949
HindII GTYRAC 1 cut(s) 949
HinfI GANTC 4 cut(s) 89, 359, 511, 941
HpaII CCGG 9 cut(s) 33, 131, 155, 319, 337, 354, 413, 587, 852
HphI GGTGA 5 cut(s) 308, 368, 576, 776, 826
Hpy166II GTNNAC 2 cut(s) 817, 949
Hpy188I TCNGA 3 cut(s) 204, 559, 959
Hpy188III TCNNGA 2 cut(s) 166, 620
Hpy8I GTNNAC 2 cut(s) 817, 949
Hpy99I CGWCG 3 cut(s) 139, 272, 290
HpyAV CCTTC 6 cut(s) 84, 88, 169, 244, 812, 920
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 4 cut(s) 108, 458, 472, 521
HpyF3I CTNAG 2 cut(s) 39, 594
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 2 cut(s) 134, 270
Hsp92II CATG 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 3 cut(s) 46, 343, 559
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 4 cut(s) 339, 397, 686, 873
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 187, 229
MalI GATC 3 cut(s) 48, 345, 561
MbiI CCGCTC 1 cut(s) 377
MboI GATC 3 cut(s) 46, 343, 559
MboII GAAGA 4 cut(s) 32, 274, 647, 692
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 2 cut(s) 27, 811
MluCI AATT 3 cut(s) 122, 197, 212
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 3 cut(s) 120, 285, 478
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 1 cut(s) 126
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 9 cut(s) 33, 131, 155, 319, 337, 354, 413, 587, 852
MspR9I CCNGG 7 cut(s) 156, 320, 354, 447, 507, 516, 812
MunI CAATTG 1 cut(s) 212
Mva1269I GAATGC 2 cut(s) 458, 676
MvaI CCWGG 4 cut(s) 447, 507, 516, 812
NciI CCSGG 3 cut(s) 156, 320, 354
NdeII GATC 3 cut(s) 46, 343, 559
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 6 cut(s) 373, 388, 399, 426, 591, 783
NmuCI GTSAC 1 cut(s) 229
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 2 cut(s) 458, 676
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 3 cut(s) 359, 511, 941
PinAI ACCGGT 1 cut(s) 32
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp6I CCWGG 4 cut(s) 445, 505, 514, 810
PspFI CCCAGC 1 cut(s) 695
PspGI CCWGG 4 cut(s) 445, 505, 514, 810
PspN4I GGNNCC 6 cut(s) 373, 388, 399, 426, 591, 783
PspPI GGNCC 7 cut(s) 35, 71, 321, 387, 424, 589, 782
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 2 cut(s) 56, 104
RsaNI GTAC 2 cut(s) 55, 103
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 3 cut(s) 46, 343, 559
Sau96I GGNCC 7 cut(s) 35, 71, 321, 387, 424, 589, 782
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 7 cut(s) 156, 320, 354, 447, 507, 516, 812
SduI GDGCHC 2 cut(s) 27, 811
SinI GGWCC 3 cut(s) 35, 387, 589
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 122, 197, 212
SsiI CCGC 6 cut(s) 365, 375, 390, 401, 677, 792
StyD4I CCNGG 7 cut(s) 154, 318, 352, 445, 505, 514, 810
StyI CCWWGG 2 cut(s) 15, 67
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 299
TaqI TCGA 4 cut(s) 137, 285, 609, 805
TasI AATT 3 cut(s) 122, 197, 212
TatI WGTACW 1 cut(s) 102
TauI GCSGC 4 cut(s) 368, 377, 403, 794
TfiI GAWTC 3 cut(s) 359, 511, 941
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 5 cut(s) 655, 868, 889, 901, 937
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 741, 783, 939
TspRI CASTG 5 cut(s) 655, 868, 889, 901, 937
VpaK11BI GGWCC 3 cut(s) 35, 387, 589
XapI RAATTY 2 cut(s) 122, 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XmnI GAANNNNTTC 1 cut(s) 801
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.