Rorug04G0329600

ELL-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011867
Physical Location & Seq
Forward (+)
50417953 .. 50419994
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0329600.1

Sequence Viewer

Length: 1509 bp
ATGGATTTTTTCTTGAGTTGCATACTCTTGTCTTTTTGCTTTGCTGCCTCCTGGTTCTTAATCCAAGCCCTCCATGGAAGAACCAGAGTTAGGCTTCCACCAGGGCCAAAGCCATTTCCATTGGTTGGGAATCTGTTTGAGCTTGGAGACAAACCTTATCTCTCTTTGACCAAGCTCTCACAACGCTATGGCCCCATAATCAGTTTGCAACTCGGGCAAGTAACGACTGTTGTAGCTTCTTCATCAGCCATGGCCAAAGAAATCCTCCGAAACCATGACCAATTCCTTTACAACCGAACAGTCCCGGATGCACTACGAGCCTTTAAAGACTACAGCTTGCCTTGGCTTCCAGTATCACCGAGGTGGAGAAACATTCGCAAAATATGCAACTCCCAATTGTTTGCCACTAAAGATCTTGATGCCAACCGAGCAGGTCGGCGAGTCAAAGTGCAAGAGCTCATAGCTAGTGTCAAGGACAGTATGGTAAAGGGTGCGGCAGTAGATATTGGAGAGGCTGCTTTCAAAAGCACTCTCAATTTGCTATCGAGGACTTGTTTCTCTATGGATCTAGCTGAAACTGGCTCAGGCAGTAGTGATACGGCTAGAGAGTTCAAGGAGATTGTTTGGGGTATAATGGAAGAGGCTGGAAAGCCGAATTTGGGGGACTACTTTCCTGTGCTTAGGAAGCTTGACCCCCAAGGCATAAGGCGACGCTTCGCCAATTACTTCCTGAGGATGTTAGGCTTCATTGGATCTATTGTCAATAAAAGGTTGGAATCCAGAAAAGTGCATGATTATGTCACAAGTAATGATATGCTGGATACCCTTATAAACATCAGTCAAGAGAAAAATGAGGAGGATATGAACAACTCCCAAGTTGTTGACCATTTGTTTCTGGTTCTATTTGCTGCGGGCACAGATACAACTTCGGCCACATTGGAATGGGCAATGGCTGAGCTACTACACAACCCAAATAGCCTTTCTAAAGCTCAAGAAGAGCTGGATCAAATGATTGGAAAAGGAAAACCAATAGAGGAATCCGACATTGCTAGACTCCCTTACTTACAAGCAATAATCAAGGAAACCTTCCGATTGCACCCAGCGGTTCCATTGCTACTGCCACGGAAAGCTGAAATAGATGTCGAAATTGGAGGTTACATTGTCCCTAAAGGTGCGCAAGTTCTTGTCAATGTTTGGGCCATAGGCAGAGACCCGGGCATTTGGGACAATCCAGATTCTTTTATGCCGGAGAGGTTCTTAGACAACCAAATTGATGTTATGGGAAAAAACTTTGAGCTTATTCCGTTTGGCGGTGGGAGGAGAATCTGTCTAGGTTTGCCATTGGCAATGAGAATGTTGCACTTGATGTTGGGTTCACTCATCAACTGCTTTGATTGGAAGCTGGAAGATGGAGTTGTACCTGAGACCATGAACATGGAAGACAAGTTTGGCCTCACTTTACAAATGGCTCAGCCTCTCATAGCTCAGCCTCTCATGCGGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAF

Protein Analysis

502

Amino Acids

56.48

Weight (kDa)

6.69

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 485 5e-106 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71080
fragaria_vesca FvH4_4g32210 FvH4_4g32210 FvH4_7g01202
malus_domestica MD13G1027200.v1.1 MD16G1030300.v1.1
prunus_persica Prupe.1G322700_v2.0.a1
pyrus_communis pycom13g02590 pycom16g02580
rosa_chinensis RchiOBHm_Chr4g0440951
rosa_laevigata RLG00000006137
rosa_multiflora Rmu_sc0000424.1_g000025
rosa_roxburghii Rroxscaffold_5G00381810
rosa_rugosa Rorug04G0329600
rosa_samantha Rh4AG381400 Rh4BG394600 Rh4CG409500 Rh4DG387900
rosa_wichuraiana Rw4G032850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
Acc16I TGCGCA 1 cut(s) 1176
Acc36I ACCTGC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 5 cut(s) 494, 911, 1103, 1311, 1498
AclWI GGATC 3 cut(s) 573, 760, 1011
AcoI YGGCCR 2 cut(s) 252, 930
AcsI RAATTY 1 cut(s) 655
AfaI GTAC 1 cut(s) 1419
AfiI CCNNNNNNNGG 4 cut(s) 90, 125, 659, 1310
AgsI TTSAA 2 cut(s) 523, 613
AjnI CCWGG 2 cut(s) 50, 100
AjuI GAANNNNNNNTTGG 4 cut(s) 964, 996, 1431, 1463
AleI CACNNNNGTG 1 cut(s) 361
Alw21I GWGCWC 1 cut(s) 459
Alw26I GTCTC 3 cut(s) 141, 1203, 1418
AlwI GGATC 3 cut(s) 573, 760, 1011
Ama87I CYCGRG 2 cut(s) 212, 1213
AoxI GGCC 6 cut(s) 104, 190, 252, 930, 1197, 1450
ApeKI GCWGC 3 cut(s) 44, 515, 908
ApoI RAATTY 1 cut(s) 655
AspLEI GCGC 1 cut(s) 1177
AspS9I GGNCC 3 cut(s) 104, 191, 1197
AsuC2I CCSGG 3 cut(s) 305, 1214, 1215
AsuHPI GGTGA 1 cut(s) 348
AvaI CYCGRG 2 cut(s) 212, 1213
AxyI CCTNAGG 1 cut(s) 731
BaeGI GKGCMC 1 cut(s) 917
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 1446
Bbv12I GWGCWC 1 cut(s) 459
BbvI GCAGC 3 cut(s) 31, 502, 895
BccI CCATC 1 cut(s) 1403
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 2 cut(s) 52, 102
BciVI GTATCC 1 cut(s) 814
BcnI CCSGG 3 cut(s) 305, 1214, 1215
BcoDI GTCTC 3 cut(s) 141, 1203, 1418
BfaI CTAG 5 cut(s) 465, 569, 603, 1050, 1331
BfmI CTRYAG 1 cut(s) 331
BfuAI ACCTGC 1 cut(s) 422
BfuI GTATCC 1 cut(s) 814
BglII AGATCT 1 cut(s) 412
BisI GCNGC 4 cut(s) 45, 495, 516, 909
BlpI GCTNAGC 3 cut(s) 954, 1470, 1485
BlsI GCNGC 4 cut(s) 46, 496, 517, 910
Bme1390I CCNGG 5 cut(s) 52, 102, 305, 1214, 1215
BmeT110I CYCGRG 2 cut(s) 212, 1213
BmgT120I GGNCC 3 cut(s) 104, 191, 1197
BmiI GGNNCC 2 cut(s) 193, 1107
BmrFI CCNGG 5 cut(s) 52, 102, 305, 1214, 1215
BmsI GCATC 2 cut(s) 298, 409
BpiI GAAGAC 1 cut(s) 1446
Bpu10I CCTNAGC 2 cut(s) 583, 680
Bpu1102I GCTNAGC 3 cut(s) 954, 1470, 1485
BpuEI CTTGAG 2 cut(s) 34, 975
BpuMI CCSGG 3 cut(s) 305, 1214, 1215
BsaI GGTCTC 2 cut(s) 1203, 1418
BsaJI CCNNGG 8 cut(s) 73, 101, 249, 341, 359, 697, 1121, 1213
BsaXI ACNNNNNCTCC 2 cut(s) 1312, 1342
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 125, 659, 1310
Bse1I ACTGG 2 cut(s) 350, 583
Bse21I CCTNAGG 1 cut(s) 731
Bse3DI GCAATG 4 cut(s) 954, 1044, 1109, 1353
BseBI CCWGG 2 cut(s) 52, 102
BseDI CCNNGG 8 cut(s) 73, 101, 249, 341, 359, 697, 1121, 1213
BseGI GGATG 2 cut(s) 313, 741
BseLI CCNNNNNNNGG 4 cut(s) 90, 125, 659, 1310
BseMI GCAATG 4 cut(s) 954, 1044, 1109, 1353
BseMII CTCAG 6 cut(s) 597, 722, 945, 1413, 1484, 1499
BseNI ACTGG 2 cut(s) 350, 583
BseRI GAGGAG 2 cut(s) 869, 1333
BseSI GKGCMC 1 cut(s) 917
BseXI GCAGC 3 cut(s) 31, 502, 895
BseYI CCCAGC 1 cut(s) 1099
BshFI GGCC 6 cut(s) 106, 192, 254, 932, 1199, 1452
BsiHKAI GWGCWC 1 cut(s) 459
BsiHKCI CYCGRG 2 cut(s) 212, 1213
BsiSI CCGG 3 cut(s) 305, 1214, 1247
BslFI GGGAC 4 cut(s) 287, 677, 1148, 1238
BslI CCNNNNNNNGG 4 cut(s) 90, 125, 659, 1310
BsmAI GTCTC 3 cut(s) 141, 1203, 1418
BsmFI GGGAC 4 cut(s) 287, 677, 1148, 1238
BsnI GGCC 6 cut(s) 106, 192, 254, 932, 1199, 1452
Bso31I GGTCTC 2 cut(s) 1203, 1418
BsoBI CYCGRG 2 cut(s) 212, 1213
Bsp1286I GDGCHC 2 cut(s) 459, 917
Bsp143I GATC 4 cut(s) 412, 565, 752, 1003
Bsp1720I GCTNAGC 3 cut(s) 954, 1470, 1485
Bsp19I CCATGG 2 cut(s) 73, 249
BspACI CCGC 5 cut(s) 494, 911, 1103, 1311, 1498
BspANI GGCC 6 cut(s) 106, 192, 254, 932, 1199, 1452
BspCNI CTCAG 6 cut(s) 596, 723, 946, 1414, 1483, 1498
BspLI GGNNCC 2 cut(s) 193, 1107
BspMI ACCTGC 1 cut(s) 422
BspPI GGATC 3 cut(s) 573, 760, 1011
BspQI GCTCTTC 1 cut(s) 990
BspTNI GGTCTC 2 cut(s) 1203, 1418
BsrDI GCAATG 4 cut(s) 954, 1044, 1109, 1353
BsrI ACTGG 2 cut(s) 350, 583
BssECI CCNNGG 8 cut(s) 73, 101, 249, 341, 359, 697, 1121, 1213
BssMI GATC 4 cut(s) 412, 565, 752, 1003
BssT1I CCWWGG 4 cut(s) 73, 249, 341, 697
Bst2UI CCWGG 2 cut(s) 52, 102
Bst4CI ACNGT 3 cut(s) 229, 301, 479
Bst6I CTCTTC 2 cut(s) 633, 990
BstAPI GCANNNNNTGC 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 338, 913
BstDEI CTNAG 8 cut(s) 583, 680, 731, 954, 1258, 1422, 1470, 1485
BstDSI CCRYGG 3 cut(s) 73, 249, 1121
BstF5I GGATG 2 cut(s) 313, 741
BstHHI GCGC 1 cut(s) 1177
BstKTI GATC 4 cut(s) 415, 568, 755, 1006
BstMAI GTCTC 3 cut(s) 141, 1203, 1418
BstMBI GATC 4 cut(s) 412, 565, 752, 1003
BstMWI GCNNNNNNNGC 6 cut(s) 214, 317, 384, 428, 685, 1495
BstNI CCWGG 2 cut(s) 52, 102
BstSCI CCNGG 5 cut(s) 50, 100, 303, 1212, 1213
BstSFI CTRYAG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 917
BstV1I GCAGC 3 cut(s) 31, 502, 895
BstV2I GAAGAC 1 cut(s) 1446
BstX2I RGATCY 3 cut(s) 412, 565, 752
BstXI CCANNNNNNTGG 1 cut(s) 1435
BstYI RGATCY 3 cut(s) 412, 565, 752
Bsu36I CCTNAGG 1 cut(s) 731
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 6 cut(s) 106, 192, 254, 932, 1199, 1452
BtgI CCRYGG 3 cut(s) 73, 249, 1121
BtsCI GGATG 2 cut(s) 313, 741
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 2 cut(s) 338, 913
CfoI GCGC 1 cut(s) 1177
Cfr13I GGNCC 3 cut(s) 104, 191, 1197
Cfr9I CCCGGG 1 cut(s) 1213
CseI GACGC 1 cut(s) 720
Csp6I GTAC 1 cut(s) 1418
CviAII CATG 7 cut(s) 74, 250, 275, 791, 1429, 1435, 1495
CviQI GTAC 1 cut(s) 1418
DdeI CTNAG 8 cut(s) 583, 680, 731, 954, 1258, 1422, 1470, 1485
DpnI GATC 4 cut(s) 414, 567, 754, 1005
DpnII GATC 4 cut(s) 412, 565, 752, 1003
DraI TTTAAA 1 cut(s) 325
EaeI YGGCCR 2 cut(s) 252, 930
Eam1104I CTCTTC 2 cut(s) 633, 990
EarI CTCTTC 2 cut(s) 633, 990
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 4 cut(s) 73, 249, 341, 697
Eco24I GRGCYC 1 cut(s) 459
Eco31I GGTCTC 2 cut(s) 1203, 1418
Eco53kI GAGCTC 1 cut(s) 457
Eco81I CCTNAGG 1 cut(s) 731
Eco88I CYCGRG 2 cut(s) 212, 1213
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 50, 100
EcoT14I CCWWGG 4 cut(s) 73, 249, 341, 697
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 4 cut(s) 73, 249, 341, 697
FaeI CATG 7 cut(s) 77, 253, 278, 794, 1432, 1438, 1498
FalI AAGNNNNNCTT 2 cut(s) 1070, 1102
FaqI GGGAC 4 cut(s) 287, 677, 1148, 1238
FatI CATG 7 cut(s) 73, 249, 274, 790, 1428, 1434, 1494
FauI CCCGC 2 cut(s) 904, 1491
Fnu4HI GCNGC 4 cut(s) 45, 495, 516, 909
FokI GGATG 2 cut(s) 320, 748
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 4 cut(s) 45, 495, 516, 909
FspBI CTAG 5 cut(s) 465, 569, 603, 1050, 1331
FspI TGCGCA 1 cut(s) 1176
GlaI GCGC 1 cut(s) 1176
GluI GCNGC 4 cut(s) 45, 495, 516, 909
GsaI CCCAGC 1 cut(s) 1103
HaeIII GGCC 6 cut(s) 106, 192, 254, 932, 1199, 1452
HapII CCGG 3 cut(s) 305, 1214, 1247
HgaI GACGC 1 cut(s) 720
HhaI GCGC 1 cut(s) 1177
Hin1II CATG 7 cut(s) 77, 253, 278, 794, 1432, 1438, 1498
Hin6I GCGC 1 cut(s) 1175
HinP1I GCGC 1 cut(s) 1175
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 7 cut(s) 130, 441, 776, 1037, 1053, 1235, 1323
HpaII CCGG 3 cut(s) 305, 1214, 1247
HphI GGTGA 1 cut(s) 348
Hpy166II GTNNAC 2 cut(s) 883, 1376
Hpy188I TCNGA 3 cut(s) 269, 1042, 1091
Hpy188III TCNNGA 7 cut(s) 13, 416, 730, 780, 842, 992, 1232
Hpy8I GTNNAC 2 cut(s) 883, 1376
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 1 cut(s) 1096
HpyCH4III ACNGT 3 cut(s) 229, 301, 479
HpyCH4V TGCA 8 cut(s) 21, 208, 311, 387, 451, 790, 1096, 1360
HpyF10VI GCNNNNNNNGC 6 cut(s) 214, 317, 384, 428, 685, 1495
HpyF3I CTNAG 8 cut(s) 583, 680, 731, 954, 1258, 1422, 1470, 1485
Hsp92II CATG 7 cut(s) 77, 253, 278, 794, 1432, 1438, 1498
HspAI GCGC 1 cut(s) 1175
Kzo9I GATC 4 cut(s) 412, 565, 752, 1003
LguI GCTCTTC 1 cut(s) 990
Lsp1109I GCAGC 3 cut(s) 31, 502, 895
LweI GCATC 2 cut(s) 298, 409
MaeI CTAG 5 cut(s) 465, 569, 603, 1050, 1331
MaeIII GTNAC 3 cut(s) 220, 799, 1154
MalI GATC 4 cut(s) 414, 567, 754, 1005
MboI GATC 4 cut(s) 412, 565, 752, 1003
MboII GAAGA 6 cut(s) 90, 231, 650, 1007, 1418, 1451
MfeI CAATTG 1 cut(s) 395
MflI RGATCY 3 cut(s) 412, 565, 752
MhlI GDGCHC 2 cut(s) 459, 917
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 7 cut(s) 281, 395, 535, 655, 721, 1146, 1269
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 2 cut(s) 450, 1047
MmeI TCCRAC 2 cut(s) 753, 1065
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 59, 324
MslI CAYNNNNRTG 4 cut(s) 361, 795, 940, 1433
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 3 cut(s) 305, 1214, 1247
MspR9I CCNGG 5 cut(s) 52, 102, 305, 1214, 1215
MunI CAATTG 1 cut(s) 395
MvaI CCWGG 2 cut(s) 52, 102
MwoI GCNNNNNNNGC 6 cut(s) 214, 317, 384, 428, 685, 1495
NciI CCSGG 3 cut(s) 305, 1214, 1215
NcoI CCATGG 2 cut(s) 73, 249
NdeII GATC 4 cut(s) 412, 565, 752, 1003
NlaIII CATG 7 cut(s) 77, 253, 278, 794, 1432, 1438, 1498
NlaIV GGNNCC 2 cut(s) 193, 1107
NmuCI GTSAC 1 cut(s) 799
NsbI TGCGCA 1 cut(s) 1176
OliI CACNNNNGTG 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 990
PfeI GAWTC 5 cut(s) 130, 776, 1037, 1235, 1323
PflMI CCANNNNNTGG 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 4 cut(s) 46, 496, 517, 910
PleI GAGTC 2 cut(s) 449, 1047
PpsI GAGTC 2 cut(s) 449, 1047
PsiI TTATAA 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 50, 100
PspFI CCCAGC 1 cut(s) 1099
PspGI CCWGG 2 cut(s) 50, 100
PspN4I GGNNCC 2 cut(s) 193, 1107
PspPI GGNCC 3 cut(s) 104, 191, 1197
PsuI RGATCY 3 cut(s) 412, 565, 752
RsaI GTAC 1 cut(s) 1419
RsaNI GTAC 1 cut(s) 1418
RseI CAYNNNNRTG 4 cut(s) 361, 795, 940, 1433
SacI GAGCTC 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 990
SaqAI TTAA 2 cut(s) 59, 324
SatI GCNGC 4 cut(s) 45, 495, 516, 909
Sau3AI GATC 4 cut(s) 412, 565, 752, 1003
Sau96I GGNCC 3 cut(s) 104, 191, 1197
SchI GAGTC 2 cut(s) 450, 1047
ScrFI CCNGG 5 cut(s) 52, 102, 305, 1214, 1215
SduI GDGCHC 2 cut(s) 459, 917
SfaNI GCATC 2 cut(s) 298, 409
SfcI CTRYAG 1 cut(s) 331
SmaI CCCGGG 1 cut(s) 1215
SmiMI CAYNNNNRTG 4 cut(s) 361, 795, 940, 1433
SmlI CTYRAG 2 cut(s) 13, 990
SmoI CTYRAG 2 cut(s) 13, 990
Sse9I AATT 7 cut(s) 281, 395, 535, 655, 721, 1146, 1269
SsiI CCGC 5 cut(s) 494, 911, 1103, 1311, 1498
SspMI CTAG 5 cut(s) 465, 569, 603, 1050, 1331
SstI GAGCTC 1 cut(s) 459
StyD4I CCNGG 5 cut(s) 50, 100, 303, 1212, 1213
StyI CCWWGG 4 cut(s) 73, 249, 341, 697
TaaI ACNGT 3 cut(s) 229, 301, 479
TaqI TCGA 2 cut(s) 545, 1143
TasI AATT 7 cut(s) 281, 395, 535, 655, 721, 1146, 1269
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 5 cut(s) 130, 776, 1037, 1235, 1323
Tru1I TTAA 2 cut(s) 59, 324
Tru9I TTAA 2 cut(s) 59, 324
TseFI GTSAC 1 cut(s) 799
TseI GCWGC 3 cut(s) 44, 515, 908
Tsp45I GTSAC 1 cut(s) 799
TspDTI ATGAA 4 cut(s) 231, 736, 878, 1445
TspGWI ACGGA 2 cut(s) 1138, 1293
TspMI CCCGGG 1 cut(s) 1213
Van91I CCANNNNNTGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XmaI CCCGGG 1 cut(s) 1213
XspI CTAG 5 cut(s) 465, 569, 603, 1050, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.