FvH4_7g01202

ELL-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011867
Physical Location & Seq
Reverse (-)
1623619 .. 1623938
320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01202.t1

Sequence Viewer

Length: 240 bp
ATGGCAAGTAACGCCAAGGAAGAGCCCAAGACCGCTCCTCAACCCGATCGGTGGTACAACCTAACCCTAGGCCCCTCCTTCAAAGACGAGTCCTCCAGCAAGTTATGCACCCTACGATATGAATTCAAGCCGGCGTCGATTGACAAGATGAAGCCGGGTTCATTGAAGAAGACGAAGGACAACAGAGTCGCAGTGGAGTTTCAGAACAACCAGTTAGGGAAGCCTAACGTGATTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAF

Protein Analysis

80

Amino Acids

8.87

Weight (kDa)

9.52

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAF PF09816 19 - 70 4.8e-12 RNA polymerase II transcription elongation factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71080
fragaria_vesca FvH4_4g32210 FvH4_4g32210 FvH4_7g01202
malus_domestica MD13G1027200.v1.1 MD16G1030300.v1.1
prunus_persica Prupe.1G322700_v2.0.a1
pyrus_communis pycom13g02590 pycom16g02580
rosa_chinensis RchiOBHm_Chr4g0440951
rosa_laevigata RLG00000006137
rosa_multiflora Rmu_sc0000424.1_g000025
rosa_roxburghii Rroxscaffold_5G00381810
rosa_rugosa Rorug04G0329600
rosa_samantha Rh4AG381400 Rh4BG394600 Rh4CG409500 Rh4DG387900
rosa_wichuraiana Rw4G032850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 35
AciI CCGC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 3 cut(s) 82, 127, 166
AoxI GGCC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 122
AspA2I CCTAGG 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 71
AsuC2I CCSGG 1 cut(s) 156
AvrII CCTAGG 1 cut(s) 67
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 176
BcnI CCSGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 68
BlnI CCTAGG 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 15, 67
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 15, 67
BseLI CCNNNNNNNGG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 27
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 131, 155
BslI CCNNNNNNNGG 1 cut(s) 51
BsnI GGCC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 33
BspANI GGCC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 15, 67
BssMI GATC 1 cut(s) 46
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 2 cut(s) 15, 67
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 11, 105
BstSCI CCNGG 1 cut(s) 154
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 71
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 5 cut(s) 25, 72, 130, 154, 223
CviKI_1 RGCY 5 cut(s) 25, 72, 130, 154, 223
CviQI GTAC 1 cut(s) 55
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 2 cut(s) 15, 67
Eco24I GRGCYC 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 122
EcoT14I CCWWGG 2 cut(s) 15, 67
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 2 cut(s) 15, 67
FaiI YATR 2 cut(s) 106, 120
FriOI GRGCYC 1 cut(s) 27
FspBI CTAG 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 1 cut(s) 72
HapII CCGG 2 cut(s) 131, 155
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 134
HinfI GANTC 2 cut(s) 89, 186
HpaII CCGG 2 cut(s) 131, 155
Hpy188I TCNGA 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 88, 169
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 105
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 134
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 109, 144, 168, 224
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 35
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 32, 178, 181
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 122
MlyI GAGTC 2 cut(s) 98, 195
MnlI CCTC 3 cut(s) 48, 85, 103
MroNI GCCGGC 1 cut(s) 130
MspI CCGG 2 cut(s) 131, 155
MspR9I CCNGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 11, 105
NaeI GCCGGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 156
NdeII GATC 1 cut(s) 46
NgoMIV GCCGGC 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 15
PdiI GCCGGC 1 cut(s) 132
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 2 cut(s) 97, 194
PpsI GAGTC 2 cut(s) 97, 194
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 71
PvuI CGATCG 1 cut(s) 49
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 2 cut(s) 98, 195
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 27
SetI ASST 2 cut(s) 63, 231
Sse9I AATT 1 cut(s) 122
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 2 cut(s) 15, 67
TaiI ACGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 122
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 3 cut(s) 135, 150, 164
TspRI CASTG 1 cut(s) 198
XapI RAATTY 1 cut(s) 122
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.