Rroxscaffold_5G00381810

ELL-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011867
Physical Location & Seq
Forward (+)
61668421 .. 61671104
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00381810.1

Sequence Viewer

Length: 879 bp
ATGGCCAGCAACGCCAAGGAAGAGCCCAAAACCGCTCCTCACCCCGATCGCTGGTACAACCTAACCCTAGGCCCCTCCTTCAAAGACGACTCCTCCAGCAAGTTCTGCACCCTACGATATGAATTTAAGCCGGCGTCGATTGACAAGACAAAGCCGGGGTCGCTGAAGAAGACGAAGGACAATAGGGTTACGGATTATAAAGACAACGACGCCGTTTTGTTTTTCGACGGCCAGACGTTTCGGCTTGAGAGGCTTCACAGGGCGGTGAAGCAGCTCCGGCATGACCGCCAGCCTGGGGAATCCGCCGGGATTCCCCTGGAGCCGCAGTTGTCTCCGCCGCCCGGCAAGGTGGCCAAGACGATGCATCCTTCTAGAAATTCATTCCCTGCCGTGCCGGTTGAGGTGGAACGAATTGATATTGGTGTGCCAGAGAATTCAGGTGTGAAATCTGTGAGTAAAGGAGTGGCTGATTACTCATTTGATCAACCAAATGTCTCTGCTGCTTCGCCAGACCATAAGGATGATGAAGTTGAGGAACATCAAGATATAGATATTGATGAACTTTTTGGTAGTGGATCACCTGATGATGGGAATGCCGCTGCTGAAAATAAATCTAATGCTGAATTCGATATCAATATGCCTCATCACAACGAGATTGATGATGAGATTGCTGATGTAGATGTTAGTGGTGATGAAGTTGATAAGGGCCCAAATGCTGCAGAAGCCCTTCGAGCCCAGGTGAATGCGGAGGAGAGTCATGAGCCGACTTCTTCTTCTAGTAGTAGCAGTGGAAGTGGGAGTAGCAGTGGAAGTGGTAGTACCAGCAGCAGCAGTGACAGTGAAGCCAGCGATGATGATTCTGCAGTCAACTCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAF

Protein Analysis

292

Amino Acids

31.37

Weight (kDa)

4.61

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAF PF09816 19 - 98 1.8e-14 RNA polymerase II transcription elongation factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71080
fragaria_vesca FvH4_4g32210 FvH4_4g32210 FvH4_7g01202
malus_domestica MD13G1027200.v1.1 MD16G1030300.v1.1
prunus_persica Prupe.1G322700_v2.0.a1
pyrus_communis pycom13g02590 pycom16g02580
rosa_chinensis RchiOBHm_Chr4g0440951
rosa_laevigata RLG00000006137
rosa_multiflora Rmu_sc0000424.1_g000025
rosa_roxburghii Rroxscaffold_5G00381810
rosa_rugosa Rorug04G0329600
rosa_samantha Rh4AG381400 Rh4BG394600 Rh4CG409500 Rh4DG387900
rosa_wichuraiana Rw4G032850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AccBSI CCGCTC 1 cut(s) 35
AciI CCGC 9 cut(s) 33, 263, 286, 303, 323, 335, 338, 597, 746
AclWI GGATC 1 cut(s) 583
AcoI YGGCCR 3 cut(s) 3, 229, 351
AcsI RAATTY 4 cut(s) 122, 376, 433, 623
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 2 cut(s) 134, 210
AfaI GTAC 2 cut(s) 56, 820
AfiI CCNNNNNNNGG 4 cut(s) 51, 295, 341, 587
AgsI TTSAA 1 cut(s) 82
AjnI CCWGG 3 cut(s) 292, 315, 735
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 336, 499
AlwI GGATC 1 cut(s) 583
AoxI GGCC 5 cut(s) 3, 70, 229, 351, 706
ApaI GGGCCC 1 cut(s) 710
ApeKI GCWGC 6 cut(s) 271, 500, 599, 716, 825, 828
ApoI RAATTY 4 cut(s) 122, 376, 433, 623
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 726
AspA2I CCTAGG 1 cut(s) 67
AspS9I GGNCC 3 cut(s) 71, 706, 707
AsuC2I CCSGG 3 cut(s) 156, 307, 342
AsuHPI GGTGA 5 cut(s) 32, 277, 570, 701, 751
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 710
BalI TGGCCA 2 cut(s) 5, 353
BanII GRGCYC 3 cut(s) 27, 710, 736
BarI GAAGNNNNNNTAC 2 cut(s) 802, 834
BbsI GAAGAC 1 cut(s) 176
BbvI GCAGC 6 cut(s) 283, 487, 586, 703, 837, 840
BccI CCATC 1 cut(s) 581
BceAI ACGGC 3 cut(s) 197, 244, 374
BciT130I CCWGG 3 cut(s) 294, 317, 737
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 3 cut(s) 156, 307, 342
BcoDI GTCTC 2 cut(s) 336, 499
BfaI CTAG 3 cut(s) 68, 372, 777
BfmI CTRYAG 2 cut(s) 717, 861
BisI GCNGC 9 cut(s) 272, 323, 338, 501, 597, 600, 717, 826, 829
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 9 cut(s) 273, 324, 339, 502, 598, 601, 718, 827, 830
Bme1390I CCNGG 6 cut(s) 156, 294, 307, 317, 342, 737
BmgT120I GGNCC 3 cut(s) 71, 706, 707
BmiI GGNNCC 3 cut(s) 73, 321, 708
BmrFI CCNGG 6 cut(s) 156, 294, 307, 317, 342, 737
BmsI GCATC 2 cut(s) 351, 373
BpiI GAAGAC 1 cut(s) 176
BpmI CTGGAG 2 cut(s) 79, 338
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 3 cut(s) 156, 307, 342
BsaHI GRCGYC 2 cut(s) 134, 210
BsaJI CCNNGG 6 cut(s) 15, 67, 155, 293, 315, 735
BsaXI ACNNNNNCTCC 6 cut(s) 77, 107, 311, 341, 790, 820
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 295, 341, 587
Bse118I RCCGGY 2 cut(s) 130, 394
BseBI CCWGG 3 cut(s) 294, 317, 737
BseDI CCNNGG 6 cut(s) 15, 67, 155, 293, 315, 735
BseGI GGATG 2 cut(s) 364, 526
BseLI CCNNNNNNNGG 4 cut(s) 51, 295, 341, 587
BseRI GAGGAG 3 cut(s) 27, 82, 764
BseSI GKGCMC 1 cut(s) 710
BseXI GCAGC 6 cut(s) 283, 487, 586, 703, 837, 840
BsgI GTGCAG 1 cut(s) 91
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 5 cut(s) 5, 72, 231, 353, 708
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 6 cut(s) 131, 155, 277, 306, 342, 395
BslI CCNNNNNNNGG 4 cut(s) 51, 295, 341, 587
BsmAI GTCTC 2 cut(s) 336, 499
BsmI GAATGC 2 cut(s) 598, 748
BsnI GGCC 5 cut(s) 5, 72, 231, 353, 708
Bsp120I GGGCCC 1 cut(s) 706
Bsp1286I GDGCHC 3 cut(s) 27, 710, 736
Bsp143I GATC 3 cut(s) 46, 481, 575
BspACI CCGC 9 cut(s) 33, 263, 286, 303, 323, 335, 338, 597, 746
BspANI GGCC 5 cut(s) 5, 72, 231, 353, 708
BspHI TCATGA 1 cut(s) 757
BspLI GGNNCC 3 cut(s) 73, 321, 708
BspMAI CTGCAG 2 cut(s) 721, 865
BspPI GGATC 1 cut(s) 583
BspQI GCTCTTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 35
BsrFI RCCGGY 2 cut(s) 130, 394
BssAI RCCGGY 2 cut(s) 130, 394
BssECI CCNNGG 6 cut(s) 15, 67, 155, 293, 315, 735
BssMI GATC 3 cut(s) 46, 481, 575
BssNI GRCGYC 2 cut(s) 134, 210
BssT1I CCWWGG 2 cut(s) 15, 67
Bst2UI CCWGG 3 cut(s) 294, 317, 737
Bst4CI ACNGT 1 cut(s) 839
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 2 cut(s) 134, 210
BstAPI GCANNNNNTGC 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 7, 132, 290, 847
BstF5I GGATG 2 cut(s) 364, 526
BstKTI GATC 3 cut(s) 49, 484, 578
BstMAI GTCTC 2 cut(s) 336, 499
BstMBI GATC 3 cut(s) 46, 481, 575
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 7 cut(s) 11, 105, 160, 250, 277, 722, 731
BstNI CCWGG 3 cut(s) 294, 317, 737
BstSCI CCNGG 6 cut(s) 154, 292, 305, 315, 340, 735
BstSFI CTRYAG 2 cut(s) 717, 861
BstSLI GKGCMC 1 cut(s) 710
BstV1I GCAGC 6 cut(s) 283, 487, 586, 703, 837, 840
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 5 cut(s) 5, 72, 231, 353, 708
BtgZI GCGATG 1 cut(s) 864
BtsCI GGATG 2 cut(s) 364, 526
BtsI GCAGTG 3 cut(s) 793, 811, 838
BtsIMutI CAGTG 4 cut(s) 793, 811, 838, 844
Cac8I GCNNGC 4 cut(s) 7, 132, 290, 847
CciI TCATGA 1 cut(s) 757
Cfr10I RCCGGY 2 cut(s) 130, 394
Cfr13I GGNCC 3 cut(s) 71, 706, 707
CseI GACGC 2 cut(s) 123, 218
Csp6I GTAC 2 cut(s) 55, 819
CviAII CATG 2 cut(s) 281, 758
CviQI GTAC 2 cut(s) 55, 819
DpnI GATC 3 cut(s) 48, 483, 577
DpnII GATC 3 cut(s) 46, 481, 575
EaeI YGGCCR 3 cut(s) 3, 229, 351
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 2 cut(s) 292, 324
Eco130I CCWWGG 2 cut(s) 15, 67
Eco24I GRGCYC 3 cut(s) 27, 710, 736
Eco32I GATATC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 185
EcoO109I RGGNCCY 2 cut(s) 71, 706
EcoRI GAATTC 2 cut(s) 433, 623
EcoRII CCWGG 3 cut(s) 292, 315, 735
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 15, 67
EcoT22I ATGCAT 1 cut(s) 366
EcoT38I GRGCYC 3 cut(s) 27, 710, 736
ErhI CCWWGG 2 cut(s) 15, 67
FaeI CATG 2 cut(s) 284, 761
FaiI YATR 7 cut(s) 120, 198, 282, 516, 548, 638, 759
FatI CATG 2 cut(s) 280, 757
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 9 cut(s) 272, 323, 338, 501, 597, 600, 717, 826, 829
FokI GGATG 2 cut(s) 351, 533
FriOI GRGCYC 3 cut(s) 27, 710, 736
Fsp4HI GCNGC 9 cut(s) 272, 323, 338, 501, 597, 600, 717, 826, 829
FspBI CTAG 3 cut(s) 68, 372, 777
GluI GCNGC 9 cut(s) 272, 323, 338, 501, 597, 600, 717, 826, 829
GsuI CTGGAG 2 cut(s) 79, 338
HaeIII GGCC 5 cut(s) 5, 72, 231, 353, 708
HapII CCGG 6 cut(s) 131, 155, 277, 306, 342, 395
HgaI GACGC 2 cut(s) 123, 218
Hin1I GRCGYC 2 cut(s) 134, 210
Hin1II CATG 2 cut(s) 284, 761
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 5 cut(s) 89, 299, 310, 754, 857
HpaII CCGG 6 cut(s) 131, 155, 277, 306, 342, 395
HphI GGTGA 5 cut(s) 32, 277, 570, 701, 751
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 1 cut(s) 878
Hpy188III TCNNGA 3 cut(s) 372, 542, 758
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 3 cut(s) 139, 212, 230
HpyAV CCTTC 4 cut(s) 88, 169, 378, 737
HpyCH4III ACNGT 1 cut(s) 839
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 108, 364, 719, 863
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 105, 160, 250, 277, 722, 731
HpySE526I ACGT 1 cut(s) 236
Hsp92I GRCGYC 2 cut(s) 134, 210
Hsp92II CATG 2 cut(s) 284, 761
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 3 cut(s) 46, 481, 575
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 3 cut(s) 40, 279, 319
Lsp1109I GCAGC 6 cut(s) 283, 487, 586, 703, 837, 840
LweI GCATC 2 cut(s) 351, 373
MaeI CTAG 3 cut(s) 68, 372, 777
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 187, 833
MalI GATC 3 cut(s) 48, 483, 577
MbiI CCGCTC 1 cut(s) 35
MboI GATC 3 cut(s) 46, 481, 575
MboII GAAGA 5 cut(s) 32, 178, 181, 762, 765
MhlI GDGCHC 3 cut(s) 27, 710, 736
MlsI TGGCCA 2 cut(s) 5, 353
MluCI AATT 5 cut(s) 122, 376, 411, 433, 623
MluNI TGGCCA 2 cut(s) 5, 353
MlyI GAGTC 2 cut(s) 83, 763
MnlI CCTC 8 cut(s) 48, 85, 103, 243, 394, 526, 651, 742
Mox20I TGGCCA 2 cut(s) 5, 353
Mph1103I ATGCAT 1 cut(s) 366
MroNI GCCGGC 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 726
MscI TGGCCA 2 cut(s) 5, 353
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 2 cut(s) 5, 353
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 6 cut(s) 131, 155, 277, 306, 342, 395
MspR9I CCNGG 6 cut(s) 156, 294, 307, 317, 342, 737
Mva1269I GAATGC 2 cut(s) 598, 748
MvaI CCWGG 3 cut(s) 294, 317, 737
MwoI GCNNNNNNNGC 7 cut(s) 11, 105, 160, 250, 277, 722, 731
NaeI GCCGGC 1 cut(s) 132
NciI CCSGG 3 cut(s) 156, 307, 342
NdeII GATC 3 cut(s) 46, 481, 575
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 284, 761
NlaIV GGNNCC 3 cut(s) 73, 321, 708
NmuCI GTSAC 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 366
PagI TCATGA 1 cut(s) 757
PciSI GCTCTTC 1 cut(s) 15
PctI GAATGC 2 cut(s) 598, 748
PdiI GCCGGC 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 3 cut(s) 299, 310, 857
PkrI GCNGC 9 cut(s) 273, 324, 339, 502, 598, 601, 718, 827, 830
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 2 cut(s) 83, 762
PpsI GAGTC 2 cut(s) 83, 762
PsiI TTATAA 1 cut(s) 198
Psp6I CCWGG 3 cut(s) 292, 315, 735
PspGI CCWGG 3 cut(s) 292, 315, 735
PspN4I GGNNCC 3 cut(s) 73, 321, 708
PspOMI GGGCCC 1 cut(s) 706
PspPI GGNCC 3 cut(s) 71, 706, 707
PstI CTGCAG 2 cut(s) 721, 865
PvuI CGATCG 1 cut(s) 49
RsaI GTAC 2 cut(s) 56, 820
RsaNI GTAC 2 cut(s) 55, 819
RseI CAYNNNNRTG 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 9 cut(s) 272, 323, 338, 501, 597, 600, 717, 826, 829
Sau3AI GATC 3 cut(s) 46, 481, 575
Sau96I GGNCC 3 cut(s) 71, 706, 707
SchI GAGTC 2 cut(s) 83, 763
ScrFI CCNGG 6 cut(s) 156, 294, 307, 317, 342, 737
SduI GDGCHC 3 cut(s) 27, 710, 736
SetI ASST 8 cut(s) 63, 239, 276, 351, 405, 442, 583, 741
SfaNI GCATC 2 cut(s) 351, 373
SfcI CTRYAG 2 cut(s) 717, 861
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 5 cut(s) 122, 376, 411, 433, 623
SsiI CCGC 9 cut(s) 33, 263, 286, 303, 323, 335, 338, 597, 746
SspMI CTAG 3 cut(s) 68, 372, 777
StyD4I CCNGG 6 cut(s) 154, 292, 305, 315, 340, 735
StyI CCWWGG 2 cut(s) 15, 67
TaaI ACNGT 1 cut(s) 839
TaiI ACGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 137, 225, 627, 730
TasI AATT 5 cut(s) 122, 376, 411, 433, 623
TauI GCSGC 3 cut(s) 325, 340, 599
TfiI GAWTC 3 cut(s) 299, 310, 857
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 4 cut(s) 793, 811, 838, 844
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 6 cut(s) 271, 500, 599, 716, 825, 828
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 5 cut(s) 135, 369, 540, 573, 708
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 4 cut(s) 793, 811, 838, 844
XapI RAATTY 4 cut(s) 122, 376, 433, 623
XbaI TCTAGA 1 cut(s) 371
XmaJI CCTAGG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 3 cut(s) 68, 372, 777
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.