AT1G71110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005085
Physical Location & Seq
Forward (+)
26817878 .. 26821094
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71110.1

Sequence Viewer

Length: 1674 bp
ATGAGCTTCTTTATCCTCTCCGTCGTCGTTTTCGTTTCTCTCGCTTTCTTCTCTCTTCCGCATTCCGTTGATTCATCTGTTTCCGCTTCACAGGATCCTCTCAGACTCATATTAGGTTCACCGAATTTTGGAACATGGAAAGGTGGAATCTCATTAGCACCAGGACCTGAATCTGATGATGTTGTCTCTGATTACCTCCTCTTAGCAGCTCATAGAACCAAGAGACCTGACATTCTTAGAGCTTTTAAGCCTTACCATGGTGGCTGGAACATCACCAATAATCACTATTGGGCTTCTGTTGGATTTACAGGTGCTCCTGGTTTCATACTAGCTGTTATCTGGCTCTTGTCTTTTGGCTCTCTTCTTGTTGTTTATCATTGCTTCAAATGGAGAATATGTGATAAAGCTAAAGGATCATCATTCGATACACGAAGAATCTGTTTCATTTTGTTGATTGTGTTTACATGTGTTGCAGCGGTGGGATGCATTCTTTTATCTGTTGGACAAGATAAGTTTCATACCGAAGCTATGCATACTCTTAAGTATGTTGTAAACCAGTCAGACTACACTGTGGAGATCCTCCAGAATGTGACTCAATATCTGTCCCTTGCGAAAACGATTAACGTGACACAGATTGTCATTCCGTCTGATGTAATGGGTGAAATTGACAAGTTAAATGTCAATCTTAACACTGCAGCTGTAACACTGGGAGAGACAACAACAGATAACGCTGCTAAAATTAAGAGAGTTTTCTATGCTGTGCGATCAGCTTTGATCACGGTCGCTACTGTGATGCTCATCCTTTCTTTTGTAGGTCTATTGCTTTCTGTCCTCCGCCACCAACATGTTGTTCATATATTCGTCGTGAGTGGGTGGATACTTGTGGCTGTGACATTTGTTCTTTGTGGAGTCTTTCTGATCCTAAACAATGCAATTTCTGATACGTGTGTAGCAATGAAGGAATGGGTTGATAATCCTCACGCAGAAACAGCTCTCAGCAGCATTCTCCCATGCGTTGATCAGCAAACAACAAACCAGACTCTTTCACAGAGTAAAGTTGTTATCAACAGCATCGTGACCGTTGTAAACACCTTTGTCTATGCTGTTGCCAATACAAACCCAGCTCCAGGTCAAGACCGCTATTACAACCAGTCTGGACCTCCGATGCCTCCTTTATGCATCCCATTTGATGCAAACATGGAAGATCGCCAGTGCTCGCCTTGGGAACTATCAATAGAAAATGCATCATCGGTCTGGGAGAATTACAAATGCGAGGTTACACCATCTGGAATCTGCACCACCGTGGGGAGAGTAACGCCAGATACCTTTGGACAGTTGGTAGCAGCTGTGAATGAGAGCTACGCTCTAGAGCATTACACGCCTCCATTGCTTAGCTTCCGAGATTGCAACTTTGTTAGGGAAACATTTATGAGTATTACCTCAGATTACTGTCCACCGTTAGTACGTAATCTGAGGATTGTGAACGCAGGACTCGGACTGATCTCCGTAGGAGTCTTACTATGTCTGGTGCTATGGATATTCTATGCGAACCGCCCCCAAAGGGAGGAAGTGTTTGCGGATCCACACCCTCAAAGAAAAGATGATAGCTTTGGTAACGGCTTGGATACTCATCACTCAGATGACGAACCTAAGCTTTCTGTAGAATGCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

557

Amino Acids

61.47

Weight (kDa)

5.82

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 59, 84, 476, 835, 1138, 1552, 1577
AclWI GGATC 7 cut(s) 89, 102, 421, 571, 913, 1574, 1587
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 1464
AfiI CCNNNNNNNGG 6 cut(s) 128, 257, 1127, 1305, 1561, 1564
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 3 cut(s) 464, 844, 944
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 3 cut(s) 160, 316, 1126
AjuI GAANNNNNNNTTGG 2 cut(s) 834, 866
AleI CACNNNNGTG 1 cut(s) 1301
Alw21I GWGCWC 2 cut(s) 316, 1217
Alw26I GTCTC 3 cut(s) 190, 217, 707
AlwI GGATC 7 cut(s) 89, 102, 421, 571, 913, 1574, 1587
AlwNI CAGNNNCTG 1 cut(s) 167
ApeKI GCWGC 6 cut(s) 206, 473, 695, 731, 999, 1343
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 164, 1157
AsuHPI GGTGA 3 cut(s) 111, 265, 671
AvaII GGWCC 2 cut(s) 164, 1157
BaeI ACNNNNGTAYC 2 cut(s) 933, 966
BamHI GGATCC 2 cut(s) 94, 1579
Bbv12I GWGCWC 2 cut(s) 316, 1217
BbvI GCAGC 6 cut(s) 218, 485, 707, 718, 1011, 1355
BccI CCATC 1 cut(s) 1291
BceAI ACGGC 1 cut(s) 1633
BciT130I CCWGG 3 cut(s) 162, 318, 1128
BciVI GTATCC 2 cut(s) 870, 1618
BclI TGATCA 2 cut(s) 774, 1018
BcoDI GTCTC 3 cut(s) 190, 217, 707
BfaI CTAG 2 cut(s) 329, 1367
BfmI CTRYAG 2 cut(s) 693, 1659
BfrI CTTAAG 1 cut(s) 539
BfuI GTATCC 2 cut(s) 870, 1618
BisI GCNGC 6 cut(s) 207, 474, 696, 732, 1000, 1344
BlpI GCTNAGC 1 cut(s) 1391
BlsI GCNGC 6 cut(s) 208, 475, 697, 733, 1001, 1345
Bme1390I CCNGG 3 cut(s) 162, 318, 1128
Bme18I GGWCC 2 cut(s) 164, 1157
BmgT120I GGNCC 2 cut(s) 164, 1157
BmiI GGNNCC 2 cut(s) 96, 1581
BmrFI CCNGG 3 cut(s) 162, 318, 1128
BmrI ACTGGG 1 cut(s) 716
BmsI GCATC 7 cut(s) 473, 783, 1080, 1155, 1180, 1188, 1253
BmuI ACTGGG 1 cut(s) 716
BplI GAGNNNNNCTC 2 cut(s) 1348, 1380
BpmI CTGGAG 2 cut(s) 566, 1110
Bpu10I CCTNAGC 1 cut(s) 1650
Bpu1102I GCTNAGC 1 cut(s) 1391
BsaAI YACGTR 2 cut(s) 945, 1466
BsaBI GATNNNNATC 2 cut(s) 797, 1629
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 256, 1220, 1302
BsaXI ACNNNNNCTCC 6 cut(s) 298, 328, 382, 412, 1556, 1586
Bsc4I CCNNNNNNNGG 6 cut(s) 128, 257, 1127, 1305, 1561, 1564
Bse1I ACTGG 4 cut(s) 556, 711, 1150, 1210
Bse3DI GCAATG 3 cut(s) 376, 960, 1385
Bse8I GATNNNNATC 2 cut(s) 797, 1629
BseBI CCWGG 3 cut(s) 162, 318, 1128
BseDI CCNNGG 3 cut(s) 256, 1220, 1302
BseGI GGATG 3 cut(s) 488, 798, 1179
BseJI GATNNNNATC 2 cut(s) 797, 1629
BseLI CCNNNNNNNGG 6 cut(s) 128, 257, 1127, 1305, 1561, 1564
BseMI GCAATG 3 cut(s) 376, 960, 1385
BseMII CTCAG 5 cut(s) 115, 1009, 1455, 1463, 1650
BseNI ACTGG 4 cut(s) 556, 711, 1150, 1210
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 6 cut(s) 218, 485, 707, 718, 1011, 1355
BseYI CCCAGC 1 cut(s) 1120
BsgI GTGCAG 1 cut(s) 1279
Bsh1285I CGRYCG 1 cut(s) 783
BsiEI CGRYCG 1 cut(s) 783
BsiHKAI GWGCWC 2 cut(s) 316, 1217
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 6 cut(s) 128, 257, 1127, 1305, 1561, 1564
BsmAI GTCTC 3 cut(s) 190, 217, 707
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 4 cut(s) 61, 486, 1002, 1670
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 316, 1217
Bsp1720I GCTNAGC 1 cut(s) 1391
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 7 cut(s) 59, 84, 476, 835, 1138, 1552, 1577
BspCNI CTCAG 5 cut(s) 114, 1008, 1454, 1464, 1649
BspLI GGNNCC 2 cut(s) 96, 1581
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 7 cut(s) 89, 102, 421, 571, 913, 1574, 1587
BspTI CTTAAG 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 217
BsrDI GCAATG 3 cut(s) 376, 960, 1385
BsrI ACTGG 4 cut(s) 556, 711, 1150, 1210
BssECI CCNNGG 3 cut(s) 256, 1220, 1302
BssT1I CCWWGG 2 cut(s) 256, 1220
Bst2UI CCWGG 3 cut(s) 162, 318, 1128
Bst4CI ACNGT 8 cut(s) 571, 781, 790, 1081, 1303, 1335, 1451, 1458
Bst6I CTCTTC 2 cut(s) 60, 366
BstAFI CTTAAG 1 cut(s) 539
BstBAI YACGTR 2 cut(s) 945, 1466
BstC8I GCNNGC 1 cut(s) 1217
BstDEI CTNAG 9 cut(s) 101, 202, 236, 995, 1391, 1441, 1472, 1636, 1650
BstDSI CCRYGG 2 cut(s) 256, 1302
BstF5I GGATG 3 cut(s) 488, 798, 1179
BstMAI GTCTC 3 cut(s) 190, 217, 707
BstMCI CGRYCG 1 cut(s) 783
BstMWI GCNNNNNNNGC 3 cut(s) 989, 1378, 1387
BstNI CCWGG 3 cut(s) 162, 318, 1128
BstNSI RCATGY 2 cut(s) 468, 848
BstSCI CCNGG 3 cut(s) 160, 316, 1126
BstSFI CTRYAG 2 cut(s) 693, 1659
BstSNI TACGTA 1 cut(s) 1466
BstV1I GCAGC 6 cut(s) 218, 485, 707, 718, 1011, 1355
BstX2I RGATCY 3 cut(s) 94, 576, 1579
BstYI RGATCY 3 cut(s) 94, 576, 1579
BsuI GTATCC 2 cut(s) 870, 1618
BtgI CCRYGG 2 cut(s) 256, 1302
BtsCI GGATG 3 cut(s) 488, 798, 1179
BtsI GCAGTG 1 cut(s) 690
BtsIMutI CAGTG 4 cut(s) 567, 690, 704, 1217
Cac8I GCNNGC 1 cut(s) 1217
CaiI CAGNNNCTG 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 164, 1157
Csp6I GTAC 1 cut(s) 1463
CviAII CATG 6 cut(s) 135, 257, 465, 845, 1011, 1198
CviQI GTAC 1 cut(s) 1463
DdeI CTNAG 9 cut(s) 101, 202, 236, 995, 1391, 1441, 1472, 1636, 1650
Eam1104I CTCTTC 2 cut(s) 60, 366
EarI CTCTTC 2 cut(s) 60, 366
EciI GGCGGA 1 cut(s) 824
Eco105I TACGTA 1 cut(s) 1466
Eco130I CCWWGG 2 cut(s) 256, 1220
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 164, 1157
EcoO109I RGGNCCY 1 cut(s) 164
EcoRII CCWGG 3 cut(s) 160, 316, 1126
EcoT14I CCWWGG 2 cut(s) 256, 1220
EcoT22I ATGCAT 4 cut(s) 488, 534, 1181, 1246
ErhI CCWWGG 2 cut(s) 256, 1220
FaeI CATG 6 cut(s) 138, 260, 468, 848, 1014, 1201
FaqI GGGAC 1 cut(s) 589
FatI CATG 6 cut(s) 134, 256, 464, 844, 1010, 1197
FbaI TGATCA 2 cut(s) 774, 1018
Fnu4HI GCNGC 6 cut(s) 207, 474, 696, 732, 1000, 1344
FokI GGATG 3 cut(s) 495, 785, 1166
Fsp4HI GCNGC 6 cut(s) 207, 474, 696, 732, 1000, 1344
FspBI CTAG 2 cut(s) 329, 1367
GluI GCNGC 6 cut(s) 207, 474, 696, 732, 1000, 1344
GsaI CCCAGC 1 cut(s) 1124
GsuI CTGGAG 2 cut(s) 566, 1110
Hin1II CATG 6 cut(s) 138, 260, 468, 848, 1014, 1201
HindIII AAGCTT 1 cut(s) 1652
HphI GGTGA 3 cut(s) 111, 265, 671
Hpy166II GTNNAC 6 cut(s) 119, 462, 553, 1087, 1454, 1483
Hpy188III TCNNGA 7 cut(s) 583, 865, 1075, 1133, 1155, 1287, 1367
Hpy8I GTNNAC 6 cut(s) 119, 462, 553, 1087, 1454, 1483
Hpy99I CGWCG 3 cut(s) 26, 29, 866
HpyAV CCTTC 1 cut(s) 952
HpyCH4III ACNGT 8 cut(s) 571, 781, 790, 1081, 1303, 1335, 1451, 1458
HpyCH4IV ACGT 3 cut(s) 624, 944, 1465
HpyF10VI GCNNNNNNNGC 3 cut(s) 989, 1378, 1387
HpyF3I CTNAG 9 cut(s) 101, 202, 236, 995, 1391, 1441, 1472, 1636, 1650
HpySE526I ACGT 3 cut(s) 624, 944, 1465
Hsp92II CATG 6 cut(s) 138, 260, 468, 848, 1014, 1201
Ksp22I TGATCA 2 cut(s) 774, 1018
LmnI GCTCC 2 cut(s) 319, 1129
Lsp1109I GCAGC 6 cut(s) 218, 485, 707, 718, 1011, 1355
LweI GCATC 7 cut(s) 473, 783, 1080, 1155, 1180, 1188, 1253
MaeI CTAG 2 cut(s) 329, 1367
MaeII ACGT 3 cut(s) 624, 944, 1465
MaeIII GTNAC 8 cut(s) 589, 625, 700, 889, 1075, 1276, 1312, 1613
MboII GAAGA 5 cut(s) 40, 47, 353, 444, 1214
MflI RGATCY 3 cut(s) 94, 576, 1579
MhlI GDGCHC 2 cut(s) 316, 1217
MluCI AATT 5 cut(s) 124, 663, 738, 933, 1261
MlyI GAGTC 6 cut(s) 99, 586, 918, 1033, 1485, 1521
MmeI TCCRAC 2 cut(s) 280, 481
Mph1103I ATGCAT 4 cut(s) 488, 534, 1181, 1246
MseI TTAA 6 cut(s) 246, 540, 621, 674, 687, 741
MslI CAYNNNNRTG 3 cut(s) 843, 1301, 1638
MspA1I CMGCKG 3 cut(s) 476, 698, 1346
MspCI CTTAAG 1 cut(s) 539
MspR9I CCNGG 3 cut(s) 162, 318, 1128
Mva1269I GAATGC 4 cut(s) 61, 486, 1002, 1670
MvaI CCWGG 3 cut(s) 162, 318, 1128
MwoI GCNNNNNNNGC 3 cut(s) 989, 1378, 1387
NcoI CCATGG 1 cut(s) 256
NlaIII CATG 6 cut(s) 138, 260, 468, 848, 1014, 1201
NlaIV GGNNCC 2 cut(s) 96, 1581
NmuCI GTSAC 4 cut(s) 589, 625, 889, 1075
NsiI ATGCAT 4 cut(s) 488, 534, 1181, 1246
NspI RCATGY 2 cut(s) 468, 848
OliI CACNNNNGTG 1 cut(s) 1301
PciI ACATGT 2 cut(s) 464, 844
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 4 cut(s) 61, 486, 1002, 1670
PfeI GAWTC 5 cut(s) 71, 147, 170, 435, 1290
PkrI GCNGC 6 cut(s) 208, 475, 697, 733, 1001, 1345
PleI GAGTC 6 cut(s) 99, 586, 917, 1033, 1485, 1520
PpsI GAGTC 6 cut(s) 99, 586, 917, 1033, 1485, 1520
Ppu21I YACGTR 2 cut(s) 945, 1466
PpuMI RGGWCCY 1 cut(s) 164
PscI ACATGT 2 cut(s) 464, 844
Psp5II RGGWCCY 1 cut(s) 164
Psp6I CCWGG 3 cut(s) 160, 316, 1126
PspFI CCCAGC 1 cut(s) 1120
PspGI CCWGG 3 cut(s) 160, 316, 1126
PspN4I GGNNCC 2 cut(s) 96, 1581
PspPI GGNCC 2 cut(s) 164, 1157
PspPPI RGGWCCY 1 cut(s) 164
PstI CTGCAG 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 3 cut(s) 94, 576, 1579
PvuII CAGCTG 2 cut(s) 698, 1346
RsaI GTAC 1 cut(s) 1464
RsaNI GTAC 1 cut(s) 1463
RseI CAYNNNNRTG 3 cut(s) 843, 1301, 1638
SaqAI TTAA 6 cut(s) 246, 540, 621, 674, 687, 741
SatI GCNGC 6 cut(s) 207, 474, 696, 732, 1000, 1344
Sau96I GGNCC 2 cut(s) 164, 1157
SchI GAGTC 6 cut(s) 99, 586, 918, 1033, 1485, 1521
ScrFI CCNGG 3 cut(s) 162, 318, 1128
SduI GDGCHC 2 cut(s) 316, 1217
SfaNI GCATC 7 cut(s) 473, 783, 1080, 1155, 1180, 1188, 1253
SfcI CTRYAG 2 cut(s) 693, 1659
SinI GGWCC 2 cut(s) 164, 1157
SmiMI CAYNNNNRTG 3 cut(s) 843, 1301, 1638
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SnaBI TACGTA 1 cut(s) 1466
Sse9I AATT 5 cut(s) 124, 663, 738, 933, 1261
SsiI CCGC 7 cut(s) 59, 84, 476, 835, 1138, 1552, 1577
SspMI CTAG 2 cut(s) 329, 1367
StyD4I CCNGG 3 cut(s) 160, 316, 1126
StyI CCWWGG 2 cut(s) 256, 1220
TaaI ACNGT 8 cut(s) 571, 781, 790, 1081, 1303, 1335, 1451, 1458
TaiI ACGT 3 cut(s) 627, 947, 1468
TaqI TCGA 1 cut(s) 423
TaqII GACCGA 1 cut(s) 1240
TasI AATT 5 cut(s) 124, 663, 738, 933, 1261
TfiI GAWTC 5 cut(s) 71, 147, 170, 435, 1290
Tru1I TTAA 6 cut(s) 246, 540, 621, 674, 687, 741
Tru9I TTAA 6 cut(s) 246, 540, 621, 674, 687, 741
TscAI CASTG 4 cut(s) 574, 697, 711, 1217
TseFI GTSAC 4 cut(s) 589, 625, 889, 1075
TseI GCWGC 6 cut(s) 206, 473, 695, 731, 999, 1343
Tsp45I GTSAC 4 cut(s) 589, 625, 889, 1075
TspDTI ATGAA 6 cut(s) 63, 313, 433, 506, 842, 971
TspGWI ACGGA 4 cut(s) 10, 55, 633, 1495
TspRI CASTG 4 cut(s) 574, 697, 711, 1217
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 2 cut(s) 164, 1157
XapI RAATTY 1 cut(s) 124
XbaI TCTAGA 1 cut(s) 1366
XceI RCATGY 2 cut(s) 468, 848
XspI CTAG 2 cut(s) 329, 1367
Zsp2I ATGCAT 4 cut(s) 488, 534, 1181, 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.