Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005085

Physical Location & Seq

Genomic Coordinates Forward (+)

38254040 .. 38256100

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG282100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCTTTTCCTAGCTGTGATCGGTCTTTTTCTGTCCGTCCTTCGGCACCAACATGCAATTCACATATTCATTGTTAGTGGATGGCTACTTGTTGCAATTACATTCATTCTTTGTGGAGCCTTTGTGATCCTCAACAATGCTGTTTCTGACACCTGTATGGCAATGGAAGAATGGGTAGAAAATCCCCACGCTGAAACAGCACTTAGCAATGTCCTTCCATGTGTTGACCAGAAAACCACAAACCAGACACTGAGCCAGAGTAAAGGAATTATCAATGACATGGTCACTGTTGTCAACACGTTCATCTACACCTATGCCAATACGTATCCATCGCATTCTGATCCGTATTATTACAATCAGTCTGGACCTCTGATGCCAGCTCTTTGTTACCCATATGATTCTGAGTTAAGAGATACTCAGTGTGGGGATCAACAGGTGTCTATTACAAATGCTTCTTTGGTTTGGCAGAACTATACATGTGAAGTCTCAGCATCTGGGATGTGCATCACTCCCGGAAGGGTGAAGCCAGAGATCTACACTCAGCTAGTTGCAGCAGTTAATGAGAGCTATGCACTACAGCACTTTACCCCTCCTTTACTCAGCATCCAAGATTGTAATTTTGTCCGAGACACGTTTCGAACAATCACCTCGAGTTATTGCCCCCCATTGGACCACTACCTGAAAATTGTGAATGCAGGTTTGGCCCTGATATCAGTTGGAGTCTTGCTCTGTCTTCTTCTCTGGGTACTCTATGCAAACCGCCCCCAAAGGGAGGAAGCGTTTGCGAAACAATCCTTACCCGTAAAAGACAAAAGTATGAAGAGCAGTTCAAACAATCATAGTCATAATAGCAGCAGCGATGTAACATCAAACATATCAAACGGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

32.83

Weight (kDa)

5.65

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71110
fragaria_vesca	FvH4_4g32140 FvH4_4g32140 FvH4_4g32140 FvH4_4g32140 FvH4_4g32140
malus_domestica	MD13G1028100.v1.1 MD16G1031000.v1.1
prunus_persica	Prupe.1G322100_v2.0.a1 Prupe.1G322100_v2.0.a1
pyrus_communis	pycom13g02650 pycom16g02700
rosa_chinensis	RchiOBHm_Chr4g0440851
rosa_laevigata	RLG00000006143
rosa_multiflora	Rmu_sc0000424.1_g000016 Rmu_sc0005054.1_g000011 Rmu_sc0012089.1_g000001 Rmu_sc0027667.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381680
rosa_rugosa	Rorug04G0329000 Rorug04G0329100.1
rosa_samantha	Rh4AG380700 Rh4BG393700 Rh4CG408600 Rh4DG387100 Rh5AG282100 Rh5CG319000 Rh5DG296600
rosa_wichuraiana	Rw0G001420 Rw4G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	686
AccB1I	GGYRCC	1 cut(s)	45
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	3 cut(s)	121, 335, 435
AfaI	GTAC	1 cut(s)	747
AfiI	CCNNNNNNNGG	4 cut(s)	42, 667, 769, 772
AflIII	ACRYGT	3 cut(s)	297, 476, 630
AgsI	TTSAA	1 cut(s)	831
AjuI	GAANNNNNNNTTGG	4 cut(s)	42, 74, 683, 715
AluBI	AGCT	4 cut(s)	14, 380, 544, 567
AluI	AGCT	4 cut(s)	14, 380, 544, 567
Alw26I	GTCTC	2 cut(s)	490, 621
AlwI	GGATC	3 cut(s)	121, 335, 435
AlwNI	CAGNNNCTG	2 cut(s)	250, 494
Ama87I	CYCGRG	1 cut(s)	649
AoxI	GGCC	1 cut(s)	702
ApeKI	GCWGC	3 cut(s)	551, 852, 855
AspS9I	GGNCC	3 cut(s)	365, 670, 703
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	532, 637
AsuII	TTCGAA	1 cut(s)	637
AvaI	CYCGRG	1 cut(s)	649
AvaII	GGWCC	2 cut(s)	365, 670
BanI	GGYRCC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	725
BbvI	GCAGC	3 cut(s)	563, 864, 867
BccI	CCATC	2 cut(s)	75, 337
BciVI	GTATCC	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	490, 621
BfaI	CTAG	2 cut(s)	11, 545
BfmI	CTRYAG	1 cut(s)	575
BfuAI	ACCTGC	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	531
BisI	GCNGC	3 cut(s)	552, 853, 856
BlsI	GCNGC	3 cut(s)	553, 854, 857
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	2 cut(s)	365, 670
BmeT110I	CYCGRG	1 cut(s)	649
BmgT120I	GGNCC	3 cut(s)	365, 670, 703
BmiI	GGNNCC	2 cut(s)	47, 118
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	4 cut(s)	363, 500, 513, 612
BpiI	GAAGAC	1 cut(s)	725
BplI	GAGNNNNNCTC	2 cut(s)	711, 743
Bpu14I	TTCGAA	1 cut(s)	637
BpuMI	CCSGG	1 cut(s)	513
BsaAI	YACGTR	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	503
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 764, 794
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 667, 769, 772
Bse3DI	GCAATG	2 cut(s)	168, 214
Bse8I	GATNNNNATC	1 cut(s)	503
BseGI	GGATG	3 cut(s)	86, 504, 603
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	4 cut(s)	42, 667, 769, 772
BseMI	GCAATG	2 cut(s)	168, 214
BseMII	CTCAG	6 cut(s)	242, 393, 431, 501, 554, 613
BseXI	GCAGC	3 cut(s)	563, 864, 867
BshFI	GGCC	1 cut(s)	704
BshNI	GGYRCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	4 cut(s)	42, 667, 769, 772
BsmAI	GTCTC	2 cut(s)	490, 621
BsmI	GAATGC	2 cut(s)	334, 697
BsnI	GGCC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	649
Bsp119I	TTCGAA	1 cut(s)	637
Bsp143I	GATC	5 cut(s)	18, 126, 340, 427, 531
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	1 cut(s)	704
BspCNI	CTCAG	6 cut(s)	243, 394, 430, 500, 553, 612
BspLI	GGNNCC	2 cut(s)	47, 118
BspMI	ACCTGC	1 cut(s)	686
BspPI	GGATC	3 cut(s)	121, 335, 435
BspQI	GCTCTTC	1 cut(s)	815
BspT104I	TTCGAA	1 cut(s)	637
BspT107I	GGYRCC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	168, 214
BssMI	GATC	5 cut(s)	18, 126, 340, 427, 531
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	7 cut(s)	203, 251, 402, 417, 487, 540, 599
BstF5I	GGATG	3 cut(s)	86, 504, 603
BstKTI	GATC	5 cut(s)	21, 129, 343, 430, 534
BstMAI	GTCTC	2 cut(s)	490, 621
BstMBI	GATC	5 cut(s)	18, 126, 340, 427, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 701
BstNSI	RCATGY	2 cut(s)	56, 480
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	575
BstSNI	TACGTA	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	563, 864, 867
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	704
BtgZI	GCGATG	2 cut(s)	315, 873
BtsCI	GGATG	3 cut(s)	86, 504, 603
BtsIMutI	CAGTG	3 cut(s)	248, 285, 425
BveI	ACCTGC	1 cut(s)	686
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	2 cut(s)	250, 494
Cfr13I	GGNCC	3 cut(s)	365, 670, 703
Csp6I	GTAC	1 cut(s)	746
CviAII	CATG	4 cut(s)	53, 219, 280, 477
CviJI	RGCY	9 cut(s)	14, 85, 119, 255, 380, 526, 544, 567, 704
CviKI_1	RGCY	9 cut(s)	14, 85, 119, 255, 380, 526, 544, 567, 704
CviQI	GTAC	1 cut(s)	746
DdeI	CTNAG	7 cut(s)	203, 251, 402, 417, 487, 540, 599
DpnI	GATC	5 cut(s)	20, 128, 342, 429, 533
DpnII	GATC	5 cut(s)	18, 126, 340, 427, 531
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
Eco105I	TACGTA	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	365, 670
Eco88I	CYCGRG	1 cut(s)	649
EcoRV	GATATC	1 cut(s)	711
FaeI	CATG	4 cut(s)	56, 222, 283, 480
FatI	CATG	4 cut(s)	52, 218, 279, 476
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	552, 853, 856
FokI	GGATG	3 cut(s)	93, 511, 590
Fsp4HI	GCNGC	3 cut(s)	552, 853, 856
FspBI	CTAG	2 cut(s)	11, 545
GluI	GCNGC	3 cut(s)	552, 853, 856
HaeIII	GGCC	1 cut(s)	704
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	4 cut(s)	56, 222, 283, 480
HincII	GTYRAC	2 cut(s)	226, 295
HindII	GTYRAC	2 cut(s)	226, 295
HinfI	GANTC	3 cut(s)	398, 720, 885
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	2 cut(s)	532, 637
Hpy166II	GTNNAC	2 cut(s)	226, 295
Hpy188I	TCNGA	5 cut(s)	148, 340, 372, 403, 626
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	2 cut(s)	226, 295
HpyAV	CCTTC	3 cut(s)	50, 224, 510
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	3 cut(s)	299, 323, 632
HpyCH4V	TGCA	7 cut(s)	56, 95, 504, 551, 572, 695, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 701
HpyF3I	CTNAG	7 cut(s)	203, 251, 402, 417, 487, 540, 599
HpySE526I	ACGT	3 cut(s)	299, 323, 632
Hsp92II	CATG	4 cut(s)	56, 222, 283, 480
Kzo9I	GATC	5 cut(s)	18, 126, 340, 427, 531
LguI	GCTCTTC	1 cut(s)	815
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	563, 864, 867
LweI	GCATC	4 cut(s)	363, 500, 513, 612
MaeI	CTAG	2 cut(s)	11, 545
MaeII	ACGT	3 cut(s)	299, 323, 632
MaeIII	GTNAC	3 cut(s)	283, 386, 862
MalI	GATC	5 cut(s)	20, 128, 342, 429, 533
MboI	GATC	5 cut(s)	18, 126, 340, 427, 531
MboII	GAAGA	4 cut(s)	179, 725, 728, 832
MflI	RGATCY	1 cut(s)	531
MluCI	AATT	5 cut(s)	57, 96, 267, 616, 684
MlyI	GAGTC	1 cut(s)	729
MmeI	TCCRAC	1 cut(s)	697
MnlI	CCTC	5 cut(s)	140, 378, 600, 658, 766
MseI	TTAA	2 cut(s)	407, 558
MslI	CAYNNNNRTG	2 cut(s)	51, 155
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	513
Mva1269I	GAATGC	2 cut(s)	334, 697
MwoI	GCNNNNNNNGC	2 cut(s)	197, 701
NciI	CCSGG	1 cut(s)	513
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	5 cut(s)	18, 126, 340, 427, 531
NlaIII	CATG	4 cut(s)	56, 222, 283, 480
NlaIV	GGNNCC	2 cut(s)	47, 118
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	2 cut(s)	56, 480
NspV	TTCGAA	1 cut(s)	637
PaeR7I	CTCGAG	1 cut(s)	649
PciI	ACATGT	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	815
PctI	GAATGC	2 cut(s)	334, 697
PfeI	GAWTC	1 cut(s)	398
PflFI	GACNNNGTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	553, 854, 857
PleI	GAGTC	1 cut(s)	728
PpsI	GAGTC	1 cut(s)	728
Ppu21I	YACGTR	1 cut(s)	324
PscI	ACATGT	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	47, 118
PspPI	GGNCC	3 cut(s)	365, 670, 703
PspXI	VCTCGAGB	1 cut(s)	649
PstNI	CAGNNNCTG	2 cut(s)	250, 494
PsuI	RGATCY	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	281
RsaI	GTAC	1 cut(s)	747
RsaNI	GTAC	1 cut(s)	746
RseI	CAYNNNNRTG	2 cut(s)	51, 155
SapI	GCTCTTC	1 cut(s)	815
SaqAI	TTAA	2 cut(s)	407, 558
SatI	GCNGC	3 cut(s)	552, 853, 856
Sau3AI	GATC	5 cut(s)	18, 126, 340, 427, 531
Sau96I	GGNCC	3 cut(s)	365, 670, 703
SchI	GAGTC	1 cut(s)	729
ScrFI	CCNGG	1 cut(s)	513
SfaNI	GCATC	4 cut(s)	363, 500, 513, 612
SfcI	CTRYAG	1 cut(s)	575
Sfr274I	CTCGAG	1 cut(s)	649
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	2 cut(s)	365, 670
SlaI	CTCGAG	1 cut(s)	649
SmiMI	CAYNNNNRTG	2 cut(s)	51, 155
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
SnaBI	TACGTA	1 cut(s)	324
Sse9I	AATT	5 cut(s)	57, 96, 267, 616, 684
SsiI	CCGC	1 cut(s)	760
SspMI	CTAG	2 cut(s)	11, 545
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	3 cut(s)	302, 326, 635
TaqI	TCGA	2 cut(s)	637, 650
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	5 cut(s)	57, 96, 267, 616, 684
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	407, 558
Tru9I	TTAA	2 cut(s)	407, 558
TscAI	CASTG	3 cut(s)	255, 292, 425
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	551, 852, 855
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	4 cut(s)	58, 94, 292, 833
TspGWI	ACGGA	2 cut(s)	25, 333
TspRI	CASTG	3 cut(s)	255, 292, 425
Tth111I	GACNNNGTC	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	365, 670
XceI	RCATGY	2 cut(s)	56, 480
XhoI	CTCGAG	1 cut(s)	649
XspI	CTAG	2 cut(s)	11, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.