Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012089.1

Orthogroup ID

OG0005085

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1874

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012089.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 808 bp

ggttggatgcattcttctttctgttgggcaagctgagtttcatgaagaagtcctgcatactctaaatttcgttgtaaaccagtcagactacactgtacagaccttgagaaatgtcacagagtatctgtcccttgcaaaggatattaatgtggcccaggttttcctacctactgatgtcatggatagtattgacaagttgaatgtggatctcaacactgcagcagatacattaacagagaagacaagtgaaaattctgataaagtgaaaaaagtcttcagtattgtgcgttccgttttaattgccgtagcagcagtaatgcttttcctagctgtgatcggtcttcttctgtccgtccttcggcaccaacatgcaattcacatattcattgttagtggatggctacttgttgcaattacattcattctttgtggagcctttgtgatcctcaacaatgctgtttctgacacctgtatggcaatggaagaatgggtagaaaatccccatgctgaaacagcacttagcaacgtccttccatgtgttgaccagaaaaccacaaaccagacactgagccagagtaaaggaattatcaatgacatggtcactgttgtcaacacgttcatctacacctatgccaatacgtatccgtcgcattctgatccgtattattacaatcagtctggacctctgatgccagctctctgttacccctatgattctgagttaagagatactcagtgtggggatcaacaggtgtctattacaaatgcttctttggtaagaatcttccacttagactactttggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

268

Amino Acids

29.75

Weight (kDa)

4.75

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71110
fragaria_vesca	FvH4_4g32140 FvH4_4g32140 FvH4_4g32140 FvH4_4g32140 FvH4_4g32140
malus_domestica	MD13G1028100.v1.1 MD16G1031000.v1.1
prunus_persica	Prupe.1G322100_v2.0.a1 Prupe.1G322100_v2.0.a1
pyrus_communis	pycom13g02650 pycom16g02700
rosa_chinensis	RchiOBHm_Chr4g0440851
rosa_laevigata	RLG00000006143
rosa_multiflora	Rmu_sc0000424.1_g000016 Rmu_sc0005054.1_g000011 Rmu_sc0012089.1_g000001 Rmu_sc0027667.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381680
rosa_rugosa	Rorug04G0329000 Rorug04G0329100.1
rosa_samantha	Rh4AG380700 Rh4BG393700 Rh4CG408600 Rh4DG387100 Rh5AG282100 Rh5CG319000 Rh5DG296600
rosa_wichuraiana	Rw0G001420 Rw4G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AclWI	GGATC	4 cut(s)	214, 437, 651, 751
AcsI	RAATTY	2 cut(s)	65, 251
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	137, 358
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AluBI	AGCT	3 cut(s)	33, 330, 696
AluI	AGCT	3 cut(s)	33, 330, 696
AlwI	GGATC	4 cut(s)	214, 437, 651, 751
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	219, 309
ApoI	RAATTY	2 cut(s)	65, 251
AseI	ATTAAT	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	152, 681
AvaII	GGWCC	1 cut(s)	681
BanI	GGYRCC	1 cut(s)	361
BbsI	GAAGAC	3 cut(s)	246, 266, 333
BbvI	GCAGC	2 cut(s)	231, 321
BccI	CCATC	1 cut(s)	391
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	1 cut(s)	156
BciVI	GTATCC	1 cut(s)	652
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	2 cut(s)	220, 310
BlsI	GCNGC	2 cut(s)	221, 311
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	152, 681
BmiI	GGNNCC	2 cut(s)	363, 434
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	679
BpiI	GAAGAC	3 cut(s)	246, 266, 333
BpuEI	CTTGAG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	640
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	424, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 358
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	12, 402
BseLI	CCNNNNNNNGG	2 cut(s)	137, 358
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	4 cut(s)	25, 558, 709, 747
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	231, 321
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	137, 358
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	10, 650
BsnI	GGCC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	95
Bsp143I	GATC	5 cut(s)	206, 334, 442, 656, 743
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	4 cut(s)	26, 559, 710, 746
BspHI	TCATGA	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	363, 434
BspMAI	CTGCAG	1 cut(s)	221
BspPI	GGATC	4 cut(s)	214, 437, 651, 751
BspT107I	GGYRCC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	484
BsrGI	TGTACA	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	206, 334, 442, 656, 743
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	95, 605
BstAUI	TGTACA	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	2 cut(s)	31, 694
BstDEI	CTNAG	6 cut(s)	34, 519, 567, 718, 733, 791
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	12, 402
BstKTI	GATC	5 cut(s)	209, 337, 445, 659, 746
BstMBI	GATC	5 cut(s)	206, 334, 442, 656, 743
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 513
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	217
BstSNI	TACGTA	1 cut(s)	640
BstV1I	GCAGC	2 cut(s)	231, 321
BstV2I	GAAGAC	3 cut(s)	246, 266, 333
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	12, 402
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	5 cut(s)	91, 214, 564, 601, 741
Cac8I	GCNNGC	2 cut(s)	31, 694
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	152, 681
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	6 cut(s)	42, 179, 369, 504, 535, 596
CviJI	RGCY	7 cut(s)	33, 153, 330, 401, 435, 571, 696
CviKI_1	RGCY	7 cut(s)	33, 153, 330, 401, 435, 571, 696
CviQI	GTAC	1 cut(s)	96
DdeI	CTNAG	6 cut(s)	34, 519, 567, 718, 733, 791
DpnI	GATC	5 cut(s)	208, 336, 444, 658, 745
DpnII	GATC	5 cut(s)	206, 334, 442, 656, 743
Eco105I	TACGTA	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	681
Eco57I	CTGAAG	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	12
FaeI	CATG	6 cut(s)	45, 182, 372, 507, 538, 599
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	6 cut(s)	41, 178, 368, 503, 534, 595
Fnu4HI	GCNGC	2 cut(s)	220, 310
FokI	GGATG	2 cut(s)	19, 409
Fsp4HI	GCNGC	2 cut(s)	220, 310
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	2 cut(s)	220, 310
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	6 cut(s)	45, 182, 372, 507, 538, 599
HincII	GTYRAC	2 cut(s)	542, 611
HindII	GTYRAC	2 cut(s)	542, 611
HinfI	GANTC	2 cut(s)	714, 781
Hpy166II	GTNNAC	3 cut(s)	77, 542, 611
Hpy188I	TCNGA	6 cut(s)	86, 257, 464, 656, 688, 719
Hpy188III	TCNNGA	2 cut(s)	42, 679
Hpy8I	GTNNAC	3 cut(s)	77, 542, 611
Hpy99I	CGWCG	1 cut(s)	650
HpyAV	CCTTC	2 cut(s)	366, 540
HpyCH4III	ACNGT	2 cut(s)	95, 605
HpyCH4IV	ACGT	3 cut(s)	526, 615, 639
HpyCH4V	TGCA	6 cut(s)	10, 56, 135, 219, 372, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 513
HpyF3I	CTNAG	6 cut(s)	34, 519, 567, 718, 733, 791
HpySE526I	ACGT	3 cut(s)	526, 615, 639
Hsp92II	CATG	6 cut(s)	45, 182, 372, 507, 538, 599
Kzo9I	GATC	5 cut(s)	206, 334, 442, 656, 743
LmnI	GCTCC	1 cut(s)	432
Lsp1109I	GCAGC	2 cut(s)	231, 321
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	3 cut(s)	526, 615, 639
MaeIII	GTNAC	3 cut(s)	113, 599, 702
MalI	GATC	5 cut(s)	208, 336, 444, 658, 745
MboI	GATC	5 cut(s)	206, 334, 442, 656, 743
MboII	GAAGA	8 cut(s)	6, 57, 251, 266, 333, 336, 495, 776
MflI	RGATCY	1 cut(s)	206
MluCI	AATT	6 cut(s)	65, 251, 298, 373, 412, 583
MnlI	CCTC	2 cut(s)	456, 694
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	4 cut(s)	145, 231, 297, 723
MslI	CAYNNNNRTG	2 cut(s)	367, 471
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	2 cut(s)	10, 650
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	309, 513
NdeII	GATC	5 cut(s)	206, 334, 442, 656, 743
NlaIII	CATG	6 cut(s)	45, 182, 372, 507, 538, 599
NlaIV	GGNNCC	2 cut(s)	363, 434
NmuCI	GTSAC	2 cut(s)	113, 599
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	1 cut(s)	372
PagI	TCATGA	1 cut(s)	41
PctI	GAATGC	2 cut(s)	10, 650
PfeI	GAWTC	2 cut(s)	714, 781
PflFI	GACNNNGTC	1 cut(s)	597
PkrI	GCNGC	2 cut(s)	221, 311
Ppu21I	YACGTR	1 cut(s)	640
PshBI	ATTAAT	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	363, 434
PspPI	GGNCC	2 cut(s)	152, 681
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PstI	CTGCAG	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	206
PsyI	GACNNNGTC	1 cut(s)	597
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	2 cut(s)	367, 471
SaqAI	TTAA	4 cut(s)	145, 231, 297, 723
SatI	GCNGC	2 cut(s)	220, 310
Sau3AI	GATC	5 cut(s)	206, 334, 442, 656, 743
Sau96I	GGNCC	2 cut(s)	152, 681
ScrFI	CCNGG	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	681
SmiMI	CAYNNNNRTG	2 cut(s)	367, 471
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SnaBI	TACGTA	1 cut(s)	640
Sse9I	AATT	6 cut(s)	65, 251, 298, 373, 412, 583
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	95, 605
TaiI	ACGT	3 cut(s)	529, 618, 642
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	6 cut(s)	65, 251, 298, 373, 412, 583
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	714, 781
Tru1I	TTAA	4 cut(s)	145, 231, 297, 723
Tru9I	TTAA	4 cut(s)	145, 231, 297, 723
TscAI	CASTG	5 cut(s)	98, 221, 571, 608, 741
TseFI	GTSAC	2 cut(s)	113, 599
TseI	GCWGC	2 cut(s)	219, 309
Tsp45I	GTSAC	2 cut(s)	113, 599
TspDTI	ATGAA	5 cut(s)	30, 58, 374, 410, 608
TspGWI	ACGGA	4 cut(s)	281, 341, 634, 649
TspRI	CASTG	5 cut(s)	98, 221, 571, 608, 741
Tth111I	GACNNNGTC	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	681
VspI	ATTAAT	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	2 cut(s)	65, 251
XceI	RCATGY	1 cut(s)	372
XspI	CTAG	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.