Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00043

Orthogroup ID

OG0005085

Physical Location & Seq

Genomic Coordinates Forward (+)

103829 .. 105205

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAGAATGGGTAGAAAATCCCCACGCTGAAACAGCACTTAGCAATGTCCTTCCATGTGTTGACCAGAAAACCACAAACCAGACACTGAGCCAGAGTAAAGGAATTATCAATGACATGGTCACTGTTGTCAACACGTTCATCTACACCTATGCTAATACGTATCCATCGCATTCTGATCCGTATTATTACAATCAGTCTGGACCTCTGATGCCAGCTCTTTGTTACCCATATGATTCTGAGTTAAGAGATACTCAGTGTGGGGATCAACAGGTGTCTATTACAAATGCTTCTTTGGTTTGGCAGAACTATACAAGTGAAGTCTCAGCATCTGGGATGTGCATCACTCCCCGAAGGGTGAAGCCAGAGATCTACACTCAGCTAGTTGCAGCAGTTAATGAGAGCTATGCACTACAGCACTATACCCCTCCTTTACTCAGCCTCCAAGATTGTAATTTTGTCCGAGACACATTTCGAACAATCACCTCGAGTTATTGCCCCCCATTGGACCACTACCTGAAAATTGTGAATGCAGGTTTGGCCCTGATATCAGTTGGAGTCTTGCTCTGTCTTCTTCTCTGGGTACTCTATGCAAACTGCCCCCAAAGGGAGGAAGCGTTTGCGAAACAATCCTTACCCGTAAAAGACAAAAGCATGAAGAGCAGTTCAAACAATCATAGTCATAATAGCAGCAGCGATGTAACAACATCAAACATATCAAACGGAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.08

Weight (kDa)

5.26

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71110
fragaria_vesca	FvH4_4g32140 FvH4_4g32140 FvH4_4g32140 FvH4_4g32140 FvH4_4g32140
malus_domestica	MD13G1028100.v1.1 MD16G1031000.v1.1
prunus_persica	Prupe.1G322100_v2.0.a1 Prupe.1G322100_v2.0.a1
pyrus_communis	pycom13g02650 pycom16g02700
rosa_chinensis	RchiOBHm_Chr4g0440851
rosa_laevigata	RLG00000006143
rosa_multiflora	Rmu_sc0000424.1_g000016 Rmu_sc0005054.1_g000011 Rmu_sc0012089.1_g000001 Rmu_sc0027667.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381680
rosa_rugosa	Rorug04G0329000 Rorug04G0329100.1
rosa_samantha	Rh4AG380700 Rh4BG393700 Rh4CG408600 Rh4DG387100 Rh5AG282100 Rh5CG319000 Rh5DG296600
rosa_wichuraiana	Rw0G001420 Rw4G032780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	524
AclWI	GGATC	2 cut(s)	173, 273
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	3 cut(s)	505, 607, 610
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	669
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	3 cut(s)	218, 382, 405
AluI	AGCT	3 cut(s)	218, 382, 405
Alw26I	GTCTC	2 cut(s)	328, 459
AlwI	GGATC	2 cut(s)	173, 273
AlwNI	CAGNNNCTG	2 cut(s)	88, 332
Ama87I	CYCGRG	1 cut(s)	487
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	3 cut(s)	389, 690, 693
AspS9I	GGNCC	3 cut(s)	203, 508, 541
AsuHPI	GGTGA	2 cut(s)	370, 475
AsuII	TTCGAA	1 cut(s)	475
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	203, 508
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	3 cut(s)	401, 702, 705
BccI	CCATC	1 cut(s)	175
BciVI	GTATCC	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	328, 459
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	369
BisI	GCNGC	3 cut(s)	390, 691, 694
BlsI	GCNGC	3 cut(s)	391, 692, 695
Bme18I	GGWCC	2 cut(s)	203, 508
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	3 cut(s)	203, 508, 541
BmsI	GCATC	3 cut(s)	201, 338, 351
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	549, 581
Bpu14I	TTCGAA	1 cut(s)	475
BsaAI	YACGTR	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	341
BsaXI	ACNNNNNCTCC	4 cut(s)	426, 456, 602, 632
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 607, 610
Bse3DI	GCAATG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	341
BseGI	GGATG	1 cut(s)	342
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	505, 607, 610
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	6 cut(s)	80, 231, 269, 339, 392, 451
BseXI	GCAGC	3 cut(s)	401, 702, 705
BshFI	GGCC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	487
BslI	CCNNNNNNNGG	3 cut(s)	505, 607, 610
BsmAI	GTCTC	2 cut(s)	328, 459
BsmI	GAATGC	2 cut(s)	172, 535
BsnI	GGCC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	487
Bsp119I	TTCGAA	1 cut(s)	475
Bsp143I	GATC	3 cut(s)	178, 265, 369
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	6 cut(s)	81, 232, 268, 338, 391, 450
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	2 cut(s)	173, 273
BspQI	GCTCTTC	1 cut(s)	653
BspT104I	TTCGAA	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	52
BssMI	GATC	3 cut(s)	178, 265, 369
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	162
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	7 cut(s)	41, 89, 240, 255, 325, 378, 437
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	3 cut(s)	181, 268, 372
BstMAI	GTCTC	2 cut(s)	328, 459
BstMBI	GATC	3 cut(s)	178, 265, 369
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 539, 660
BstSFI	CTRYAG	1 cut(s)	413
BstSNI	TACGTA	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	401, 702, 705
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	542
BtgZI	GCGATG	2 cut(s)	153, 711
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	3 cut(s)	86, 123, 263
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	2 cut(s)	88, 332
Cfr13I	GGNCC	3 cut(s)	203, 508, 541
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	3 cut(s)	57, 118, 655
CviJI	RGCY	7 cut(s)	93, 218, 364, 382, 405, 441, 542
CviKI_1	RGCY	7 cut(s)	93, 218, 364, 382, 405, 441, 542
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	7 cut(s)	41, 89, 240, 255, 325, 378, 437
DpnI	GATC	3 cut(s)	180, 267, 371
DpnII	GATC	3 cut(s)	178, 265, 369
Eam1104I	CTCTTC	1 cut(s)	653
EarI	CTCTTC	1 cut(s)	653
Eco105I	TACGTA	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	549
Eco47I	GGWCC	2 cut(s)	203, 508
Eco88I	CYCGRG	1 cut(s)	487
EcoRV	GATATC	1 cut(s)	549
FaeI	CATG	3 cut(s)	60, 121, 658
FatI	CATG	3 cut(s)	56, 117, 654
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	390, 691, 694
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	3 cut(s)	390, 691, 694
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	3 cut(s)	390, 691, 694
HaeIII	GGCC	1 cut(s)	542
Hin1II	CATG	3 cut(s)	60, 121, 658
HincII	GTYRAC	2 cut(s)	64, 133
HindII	GTYRAC	2 cut(s)	64, 133
HinfI	GANTC	3 cut(s)	236, 558, 726
HphI	GGTGA	2 cut(s)	370, 475
Hpy166II	GTNNAC	2 cut(s)	64, 133
Hpy188I	TCNGA	4 cut(s)	178, 210, 241, 464
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	2 cut(s)	64, 133
HpyAV	CCTTC	2 cut(s)	62, 348
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	137, 161
HpyCH4V	TGCA	5 cut(s)	342, 389, 410, 533, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 539, 660
HpyF3I	CTNAG	7 cut(s)	41, 89, 240, 255, 325, 378, 437
HpySE526I	ACGT	2 cut(s)	137, 161
Hsp92II	CATG	3 cut(s)	60, 121, 658
Kzo9I	GATC	3 cut(s)	178, 265, 369
LguI	GCTCTTC	1 cut(s)	653
Lsp1109I	GCAGC	3 cut(s)	401, 702, 705
LweI	GCATC	3 cut(s)	201, 338, 351
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	2 cut(s)	137, 161
MaeIII	GTNAC	3 cut(s)	121, 224, 700
MalI	GATC	3 cut(s)	180, 267, 371
MboI	GATC	3 cut(s)	178, 265, 369
MboII	GAAGA	4 cut(s)	17, 563, 566, 670
MflI	RGATCY	1 cut(s)	369
MluCI	AATT	3 cut(s)	105, 454, 522
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	1 cut(s)	535
MnlI	CCTC	5 cut(s)	216, 438, 452, 496, 604
MseI	TTAA	2 cut(s)	245, 396
Mva1269I	GAATGC	2 cut(s)	172, 535
MwoI	GCNNNNNNNGC	3 cut(s)	35, 539, 660
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	3 cut(s)	178, 265, 369
NlaIII	CATG	3 cut(s)	60, 121, 658
NmuCI	GTSAC	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	475
PaeR7I	CTCGAG	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	653
PctI	GAATGC	2 cut(s)	172, 535
PfeI	GAWTC	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	391, 692, 695
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Ppu21I	YACGTR	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	203, 508, 541
PspXI	VCTCGAGB	1 cut(s)	487
PstNI	CAGNNNCTG	2 cut(s)	88, 332
PsuI	RGATCY	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	119
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	245, 396
SatI	GCNGC	3 cut(s)	390, 691, 694
Sau3AI	GATC	3 cut(s)	178, 265, 369
Sau96I	GGNCC	3 cut(s)	203, 508, 541
SchI	GAGTC	1 cut(s)	567
SfaNI	GCATC	3 cut(s)	201, 338, 351
SfcI	CTRYAG	1 cut(s)	413
Sfr274I	CTCGAG	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	2 cut(s)	203, 508
SlaI	CTCGAG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SnaBI	TACGTA	1 cut(s)	162
Sse9I	AATT	3 cut(s)	105, 454, 522
SspMI	CTAG	1 cut(s)	383
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	140, 164
TaqI	TCGA	2 cut(s)	475, 488
TasI	AATT	3 cut(s)	105, 454, 522
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	2 cut(s)	245, 396
Tru9I	TTAA	2 cut(s)	245, 396
TscAI	CASTG	3 cut(s)	93, 130, 263
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	389, 690, 693
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	130, 671
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	93, 130, 263
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	203, 508
XhoI	CTCGAG	1 cut(s)	487
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.