Rh4CG408600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005085
Physical Location & Seq
Reverse (-)
65447096 .. 65451843
4748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG408600.1

Sequence Viewer

Length: 1290 bp
ATGAAGATTGACACTTCATTTTGCTGCCTCATTTTGTTTCTGGTTTTGGGTTCTTTCTGCTGCGTGTCAGCTCTAGCGACTGATGGAGTTGTAGCCAACAGAAGATCTCTCAAATTTAGTCTAGGAGATGAGAATCTGGGGTCTTGGCAAAATGAGCTATCTGAGACTGCAGAGGCCCCAGGGCCTTCGAGCGATGGTCCTGAGCTTGTATTGGCGGCGAAAAGGACCAAGAGGCCTGATATTCTTGATGGGTTCAAGCGTTATCGAGGAGGCTGGGACATAGCGAATTGCCATTACTGGGCTTCTGTTGGATTCACAGGTGCCGCTGGTTTCATTATTTCTGTCCTATGGTTTGTTGCTTTTGGCATCATTCTTGTGGTTCATCATTGCTGTGGATGGAGAATAAACATTAAAGATGAAGGATCACCCCGCTCACAGAGGATGTGTCTGATTATTCTGATAGTCTTCACCTGTGCTGCCACGGTTGGATGCATTCTTCTTTCTGTTGGGCAAGCTGAGTTTCATGAAGAAGTCCTGCATACTCTAAATTTCGTTGTAAACCAGTCAGACTACACTGTACAGACCTTGAGAAACGTCACAGAGTATCTGTCCCTTGCAAAGGATATTAATGTGGCCCAGGTTTTCCTACCTACTGATGTCATGGATAGTATTGACAAGTTGAATGTGGATCTGAACACTGCAGCAGATACATTAACAGAGAAGACAAGTGAAAATTCTGATAAAGTCAAAAAAGTCTTCAGTATTGTGCGTTCCGTTTTAATTGCCGTAGCAGCAGTAATGCTTTTCCTAGCTGTGATCGGTCTTCTTCTGTCAGTCCTTCGGCACCAACATGCAATTCACATATTCATTGTTAGTGGATGGCTACTTGTTGCAATTACATTCATTCTTTGTGGAGCCTTTGTGATCCTCAACAATGCTGTTTCTGACACCTGTATGGCAATGGAAGAATGGGTAGAAAATCCCCATGCTGAAACAGCACTTAGCAACGTCCTTCCATGTGTTGACCAGAAAACCACAAACCAGACACTAAGCCAGAGTAAAGGAATTATCAATGACATGGTCACTGTTGTCAACACGTTCATCTACACCTATGCCAATACGTATCCGTCGCATTCTGATCCGTATTATTACAATCAGTCTGGACCTCTGATGCCAGCTCTTTGTTACCCCTATGATTCTGAGTTAAGAGATACTCAGTGTGGGGATCAACAGGTGTCTATTACAAATGCTTCTTTGGTAAGAATCTTCCACTTAGACTACTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

429

Amino Acids

47.33

Weight (kDa)

5.25

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 320, 843
AccBSI CCGCTC 1 cut(s) 432
AciI CCGC 3 cut(s) 215, 324, 430
AclWI GGATC 5 cut(s) 430, 696, 919, 1133, 1233
AcsI RAATTY 3 cut(s) 113, 547, 733
AcuI CTGAAG 1 cut(s) 742
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 2 cut(s) 298, 619
AflIII ACRYGT 1 cut(s) 1095
AgsI TTSAA 2 cut(s) 256, 682
AjnI CCWGG 2 cut(s) 178, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 840, 872
AluBI AGCT 6 cut(s) 71, 157, 205, 515, 812, 1178
AluI AGCT 6 cut(s) 71, 157, 205, 515, 812, 1178
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 5 cut(s) 430, 696, 919, 1133, 1233
AoxI GGCC 4 cut(s) 174, 182, 233, 633
ApeKI GCWGC 5 cut(s) 24, 60, 476, 701, 791
ApoI RAATTY 3 cut(s) 113, 547, 733
AseI ATTAAT 1 cut(s) 627
AspS9I GGNCC 6 cut(s) 175, 182, 197, 225, 634, 1163
AsuHPI GGTGA 2 cut(s) 417, 460
AvaII GGWCC 3 cut(s) 197, 225, 1163
BanI GGYRCC 2 cut(s) 320, 843
BbsI GAAGAC 4 cut(s) 457, 728, 748, 815
BbvI GCAGC 5 cut(s) 11, 47, 463, 713, 803
BccI CCATC 5 cut(s) 77, 188, 242, 390, 873
BceAI ACGGC 1 cut(s) 770
BciT130I CCWGG 2 cut(s) 180, 638
BciVI GTATCC 1 cut(s) 1134
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 3 cut(s) 74, 122, 809
BfmI CTRYAG 2 cut(s) 168, 699
BfuI GTATCC 1 cut(s) 1134
BglII AGATCT 1 cut(s) 104
BisI GCNGC 7 cut(s) 25, 61, 216, 324, 477, 702, 792
BlsI GCNGC 7 cut(s) 26, 62, 217, 325, 478, 703, 793
Bme1390I CCNGG 2 cut(s) 180, 638
Bme18I GGWCC 3 cut(s) 197, 225, 1163
BmgT120I GGNCC 6 cut(s) 175, 182, 197, 225, 634, 1163
BmiI GGNNCC 4 cut(s) 177, 322, 845, 916
BmrFI CCNGG 2 cut(s) 180, 638
BmrI ACTGGG 1 cut(s) 307
BmsI GCATC 3 cut(s) 375, 479, 1161
BmuI ACTGGG 1 cut(s) 307
BpiI GAAGAC 4 cut(s) 457, 728, 748, 815
Bpu10I CCTNAGC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 607
BsaAI YACGTR 1 cut(s) 1122
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 178, 179, 480, 636
BsaXI ACNNNNNCTCC 2 cut(s) 906, 936
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 619
Bse1I ACTGG 2 cut(s) 302, 562
Bse3DI GCAATG 2 cut(s) 385, 966
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 2 cut(s) 180, 638
BseDI CCNNGG 4 cut(s) 178, 179, 480, 636
BseGI GGATG 4 cut(s) 401, 447, 494, 884
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 298, 619
BseMI GCAATG 2 cut(s) 385, 966
BseMII CTCAG 5 cut(s) 153, 192, 507, 1191, 1229
BseNI ACTGG 2 cut(s) 302, 562
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 5 cut(s) 11, 47, 463, 713, 803
BseYI CCCAGC 1 cut(s) 273
BshFI GGCC 4 cut(s) 176, 184, 235, 635
BshNI GGYRCC 2 cut(s) 320, 843
BslFI GGGAC 2 cut(s) 290, 595
BslI CCNNNNNNNGG 2 cut(s) 298, 619
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 290, 595
BsmI GAATGC 2 cut(s) 492, 1132
BsnI GGCC 4 cut(s) 176, 184, 235, 635
Bsp1407I TGTACA 1 cut(s) 577
Bsp143I GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
BspACI CCGC 3 cut(s) 215, 324, 430
BspANI GGCC 4 cut(s) 176, 184, 235, 635
BspCNI CTCAG 5 cut(s) 154, 193, 508, 1192, 1228
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 4 cut(s) 177, 322, 845, 916
BspMAI CTGCAG 2 cut(s) 172, 703
BspPI GGATC 5 cut(s) 430, 696, 919, 1133, 1233
BspT107I GGYRCC 2 cut(s) 320, 843
BsrBI CCGCTC 1 cut(s) 432
BsrDI GCAATG 2 cut(s) 385, 966
BsrGI TGTACA 1 cut(s) 577
BsrI ACTGG 2 cut(s) 302, 562
BssECI CCNNGG 4 cut(s) 178, 179, 480, 636
BssMI GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
Bst2UI CCWGG 2 cut(s) 180, 638
Bst4CI ACNGT 3 cut(s) 484, 577, 1087
BstAUI TGTACA 1 cut(s) 577
BstBAI YACGTR 1 cut(s) 1122
BstC8I GCNNGC 2 cut(s) 513, 1176
BstDEI CTNAG 8 cut(s) 162, 201, 516, 1001, 1049, 1200, 1215, 1273
BstDSI CCRYGG 1 cut(s) 480
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 4 cut(s) 401, 447, 494, 884
BstKTI GATC 7 cut(s) 107, 425, 691, 819, 927, 1141, 1228
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 154, 791, 995
BstNI CCWGG 2 cut(s) 180, 638
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 2 cut(s) 178, 636
BstSFI CTRYAG 2 cut(s) 168, 699
BstSNI TACGTA 1 cut(s) 1122
BstV1I GCAGC 5 cut(s) 11, 47, 463, 713, 803
BstV2I GAAGAC 4 cut(s) 457, 728, 748, 815
BstX2I RGATCY 2 cut(s) 104, 688
BstYI RGATCY 2 cut(s) 104, 688
BsuI GTATCC 1 cut(s) 1134
BsuRI GGCC 4 cut(s) 176, 184, 235, 635
BtgI CCRYGG 1 cut(s) 480
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 4 cut(s) 401, 447, 494, 884
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 4 cut(s) 573, 696, 1083, 1223
Cac8I GCNNGC 2 cut(s) 513, 1176
CciI TCATGA 1 cut(s) 523
Cfr13I GGNCC 6 cut(s) 175, 182, 197, 225, 634, 1163
Csp6I GTAC 1 cut(s) 578
CviAII CATG 6 cut(s) 524, 661, 851, 986, 1017, 1078
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 8 cut(s) 162, 201, 516, 1001, 1049, 1200, 1215, 1273
DpnI GATC 7 cut(s) 106, 424, 690, 818, 926, 1140, 1227
DpnII GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
Eco105I TACGTA 1 cut(s) 1122
Eco147I AGGCCT 1 cut(s) 235
Eco47I GGWCC 3 cut(s) 197, 225, 1163
Eco57I CTGAAG 1 cut(s) 742
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoO109I RGGNCCY 2 cut(s) 175, 182
EcoRII CCWGG 2 cut(s) 178, 636
EcoT22I ATGCAT 1 cut(s) 494
FaeI CATG 6 cut(s) 527, 664, 854, 989, 1020, 1081
FaqI GGGAC 2 cut(s) 290, 595
FatI CATG 6 cut(s) 523, 660, 850, 985, 1016, 1077
FauI CCCGC 1 cut(s) 437
Fnu4HI GCNGC 7 cut(s) 25, 61, 216, 324, 477, 702, 792
FokI GGATG 4 cut(s) 408, 454, 501, 891
Fsp4HI GCNGC 7 cut(s) 25, 61, 216, 324, 477, 702, 792
FspBI CTAG 3 cut(s) 74, 122, 809
GluI GCNGC 7 cut(s) 25, 61, 216, 324, 477, 702, 792
GsaI CCCAGC 1 cut(s) 277
HaeIII GGCC 4 cut(s) 176, 184, 235, 635
Hin1II CATG 6 cut(s) 527, 664, 854, 989, 1020, 1081
HincII GTYRAC 2 cut(s) 1024, 1093
HindII GTYRAC 2 cut(s) 1024, 1093
HinfI GANTC 4 cut(s) 133, 312, 1196, 1263
HphI GGTGA 2 cut(s) 417, 460
Hpy166II GTNNAC 3 cut(s) 559, 1024, 1093
Hpy188III TCNNGA 4 cut(s) 200, 245, 524, 1161
Hpy8I GTNNAC 3 cut(s) 559, 1024, 1093
Hpy99I CGWCG 1 cut(s) 1132
HpyAV CCTTC 4 cut(s) 195, 413, 848, 1022
HpyCH4III ACNGT 3 cut(s) 484, 577, 1087
HpyCH4IV ACGT 4 cut(s) 594, 1008, 1097, 1121
HpyCH4V TGCA 7 cut(s) 170, 492, 538, 617, 701, 854, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 791, 995
HpyF3I CTNAG 8 cut(s) 162, 201, 516, 1001, 1049, 1200, 1215, 1273
HpySE526I ACGT 4 cut(s) 594, 1008, 1097, 1121
Hsp92II CATG 6 cut(s) 527, 664, 854, 989, 1020, 1081
Kzo9I GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
LmnI GCTCC 1 cut(s) 914
Lsp1109I GCAGC 5 cut(s) 11, 47, 463, 713, 803
LweI GCATC 3 cut(s) 375, 479, 1161
MaeI CTAG 3 cut(s) 74, 122, 809
MaeII ACGT 4 cut(s) 594, 1008, 1097, 1121
MaeIII GTNAC 3 cut(s) 595, 1081, 1184
MalI GATC 7 cut(s) 106, 424, 690, 818, 926, 1140, 1227
MbiI CCGCTC 1 cut(s) 432
MboI GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
MflI RGATCY 2 cut(s) 104, 688
MluCI AATT 8 cut(s) 113, 286, 547, 733, 780, 855, 894, 1065
MmeI TCCRAC 2 cut(s) 289, 466
MnlI CCTC 8 cut(s) 38, 166, 225, 260, 263, 432, 938, 1176
Mph1103I ATGCAT 1 cut(s) 494
MseI TTAA 5 cut(s) 411, 627, 713, 779, 1205
MslI CAYNNNNRTG 4 cut(s) 374, 390, 849, 953
MspA1I CMGCKG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 180, 638
Mva1269I GAATGC 2 cut(s) 492, 1132
MvaI CCWGG 2 cut(s) 180, 638
MwoI GCNNNNNNNGC 3 cut(s) 154, 791, 995
NdeII GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
NlaIII CATG 6 cut(s) 527, 664, 854, 989, 1020, 1081
NlaIV GGNNCC 4 cut(s) 177, 322, 845, 916
NmuCI GTSAC 2 cut(s) 595, 1081
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 1 cut(s) 854
PagI TCATGA 1 cut(s) 523
PasI CCCWGGG 1 cut(s) 179
PceI AGGCCT 1 cut(s) 235
PctI GAATGC 2 cut(s) 492, 1132
PfeI GAWTC 4 cut(s) 133, 312, 1196, 1263
PflFI GACNNNGTC 1 cut(s) 1079
PkrI GCNGC 7 cut(s) 26, 62, 217, 325, 478, 703, 793
Ppu21I YACGTR 1 cut(s) 1122
PshBI ATTAAT 1 cut(s) 627
Psp6I CCWGG 2 cut(s) 178, 636
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 2 cut(s) 178, 636
PspN4I GGNNCC 4 cut(s) 177, 322, 845, 916
PspPI GGNCC 6 cut(s) 175, 182, 197, 225, 634, 1163
PsrI GAACNNNNNNTAC 2 cut(s) 754, 786
PstI CTGCAG 2 cut(s) 172, 703
PsuI RGATCY 2 cut(s) 104, 688
PsyI GACNNNGTC 1 cut(s) 1079
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 4 cut(s) 374, 390, 849, 953
SaqAI TTAA 5 cut(s) 411, 627, 713, 779, 1205
SatI GCNGC 7 cut(s) 25, 61, 216, 324, 477, 702, 792
Sau3AI GATC 7 cut(s) 104, 422, 688, 816, 924, 1138, 1225
Sau96I GGNCC 6 cut(s) 175, 182, 197, 225, 634, 1163
ScrFI CCNGG 2 cut(s) 180, 638
SfaNI GCATC 3 cut(s) 375, 479, 1161
SfcI CTRYAG 2 cut(s) 168, 699
SinI GGWCC 3 cut(s) 197, 225, 1163
SmiMI CAYNNNNRTG 4 cut(s) 374, 390, 849, 953
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
SnaBI TACGTA 1 cut(s) 1122
Sse9I AATT 8 cut(s) 113, 286, 547, 733, 780, 855, 894, 1065
SseBI AGGCCT 1 cut(s) 235
SsiI CCGC 3 cut(s) 215, 324, 430
SspMI CTAG 3 cut(s) 74, 122, 809
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 178, 636
TaaI ACNGT 3 cut(s) 484, 577, 1087
TaiI ACGT 4 cut(s) 597, 1011, 1100, 1124
TaqI TCGA 2 cut(s) 188, 265
TaqII GACCGA 1 cut(s) 809
TasI AATT 8 cut(s) 113, 286, 547, 733, 780, 855, 894, 1065
TatI WGTACW 1 cut(s) 577
TauI GCSGC 2 cut(s) 218, 326
TfiI GAWTC 4 cut(s) 133, 312, 1196, 1263
Tru1I TTAA 5 cut(s) 411, 627, 713, 779, 1205
Tru9I TTAA 5 cut(s) 411, 627, 713, 779, 1205
TscAI CASTG 4 cut(s) 580, 703, 1090, 1223
TseFI GTSAC 2 cut(s) 595, 1081
TseI GCWGC 5 cut(s) 24, 60, 476, 701, 791
Tsp45I GTSAC 2 cut(s) 595, 1081
TspGWI ACGGA 3 cut(s) 763, 1116, 1131
TspRI CASTG 4 cut(s) 580, 703, 1090, 1223
Tth111I GACNNNGTC 1 cut(s) 1079
VpaK11BI GGWCC 3 cut(s) 197, 225, 1163
VspI ATTAAT 1 cut(s) 627
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 3 cut(s) 113, 547, 733
XceI RCATGY 1 cut(s) 854
XspI CTAG 3 cut(s) 74, 122, 809
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.