AT1G71430

Domain of unknown function (DUF4598)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010025
Physical Location & Seq
Forward (+)
26920440 .. 26921152
713 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71430.1

Sequence Viewer

Length: 495 bp
ATGGAAGGGAAAGAAAACTGCAAAGATCTCCTGAAATTGGAGCTCAAGAATCCATCTTCTTCCTCTGCTATGGATTCAGCACTTTTGATGTGTACGGATAAGAATAAGAAGAAGAAGAAGATGGAGGCTCCTCCTCCATCGAAGCCAACGATTGCTCCAGTTCCTAAAAGCCAACTTCTTGGTAAACTTAAAGGCTTCTTGGGGGTTATGGCGGAGGCTAACAAAAAGTCTGAGGCAAACCCAGAAGCTTATAATATCGAAGCACTAACGGGTAACGAATCTGAACTTATCGAGATGGACTTGATGCTCGGTGTCGCTGATCTCAACACGCCTGAAGCAGTCAGTGCGGCTGAAGCTGCTATTGCCGGCATTGGTCCGGCCGCTGAAAGTGGAGATTCGAGCAGCGATGATGAGAGTGATAGCGAAAGTGAAGGAGAGGAGAGTAAGAGTGCAGAATGTAGCAGAAAACGATCCAAGATCATTGAGCTCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4598

Protein Analysis

164

Amino Acids

17.3

Weight (kDa)

4.72

Isoelectric Point (pI)

63.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOPCHAP1 PF15370 59 - 157 2.1e-14 NOP protein chaperone 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
AciI CCGC 3 cut(s) 212, 347, 381
AclWI GGATC 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 378
AcuI CTGAAG 2 cut(s) 354, 372
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 43, 248, 356, 487
AluI AGCT 4 cut(s) 43, 248, 356, 487
Alw21I GWGCWC 2 cut(s) 45, 489
AlwI GGATC 1 cut(s) 465
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 356, 402
AspS9I GGNCC 1 cut(s) 374
AvaII GGWCC 1 cut(s) 374
BanII GRGCYC 2 cut(s) 45, 489
Bbv12I GWGCWC 2 cut(s) 45, 489
BbvI GCAGC 2 cut(s) 343, 414
BccI CCATC 4 cut(s) 61, 115, 145, 289
BglII AGATCT 1 cut(s) 25
BisI GCNGC 4 cut(s) 348, 357, 381, 403
BlsI GCNGC 4 cut(s) 349, 358, 382, 404
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 129
BmsI GCATC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 3 cut(s) 120, 123, 452
BseX3I CGGCCG 1 cut(s) 378
BseXI GCAGC 2 cut(s) 343, 414
BsgI GTGCAG 1 cut(s) 471
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 381
BsiHKAI GWGCWC 2 cut(s) 45, 489
BsiSI CCGG 2 cut(s) 366, 377
BslI CCNNNNNNNGG 1 cut(s) 37
BsnI GGCC 1 cut(s) 380
Bsp1286I GDGCHC 2 cut(s) 45, 489
Bsp143I GATC 4 cut(s) 25, 319, 470, 477
BspACI CCGC 3 cut(s) 212, 347, 381
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 365
BssMI GATC 4 cut(s) 25, 319, 470, 477
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 231
BstKTI GATC 4 cut(s) 28, 322, 473, 480
BstMBI GATC 4 cut(s) 25, 319, 470, 477
BstMCI CGRYCG 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 344, 353, 356, 362
BstV1I GCAGC 2 cut(s) 343, 414
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 1 cut(s) 25
BstZI CGGCCG 1 cut(s) 378
BsuRI GGCC 1 cut(s) 380
BtgZI GCGATG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 349
Cac8I GCNNGC 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 1 cut(s) 93
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 1 cut(s) 231
DpnI GATC 4 cut(s) 27, 321, 472, 479
DpnII GATC 4 cut(s) 25, 319, 470, 477
EaeI YGGCCR 1 cut(s) 378
EagI CGGCCG 1 cut(s) 378
EciI GGCGGA 1 cut(s) 227
Ecl136II GAGCTC 2 cut(s) 43, 487
EclXI CGGCCG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 45, 489
Eco47I GGWCC 1 cut(s) 374
Eco52I CGGCCG 1 cut(s) 378
Eco53kI GAGCTC 2 cut(s) 43, 487
Eco57I CTGAAG 2 cut(s) 354, 372
EcoICRI GAGCTC 2 cut(s) 43, 487
EcoT38I GRGCYC 2 cut(s) 45, 489
FaiI YATR 4 cut(s) 71, 209, 252, 493
Fnu4HI GCNGC 4 cut(s) 348, 357, 381, 403
FriOI GRGCYC 2 cut(s) 45, 489
Fsp4HI GCNGC 4 cut(s) 348, 357, 381, 403
GluI GCNGC 4 cut(s) 348, 357, 381, 403
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 380
HapII CCGG 2 cut(s) 366, 377
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 4 cut(s) 49, 74, 278, 395
HpaII CCGG 2 cut(s) 366, 377
Hpy166II GTNNAC 2 cut(s) 93, 185
Hpy188I TCNGA 2 cut(s) 232, 283
Hpy188III TCNNGA 3 cut(s) 31, 46, 292
Hpy8I GTNNAC 2 cut(s) 93, 185
HpyAV CCTTC 1 cut(s) 425
HpyCH4V TGCA 2 cut(s) 21, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 353, 356, 362
HpyF3I CTNAG 1 cut(s) 231
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 4 cut(s) 25, 319, 470, 477
LmnI GCTCC 3 cut(s) 40, 133, 160
LpnPI CCDG 6 cut(s) 44, 171, 255, 345, 379, 390
Lsp1109I GCAGC 2 cut(s) 343, 414
LweI GCATC 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 272
MalI GATC 4 cut(s) 27, 321, 472, 479
MboI GATC 4 cut(s) 25, 319, 470, 477
MboII GAAGA 6 cut(s) 48, 51, 121, 124, 127, 130
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 45, 489
MluCI AATT 1 cut(s) 35
MnlI CCTC 7 cut(s) 73, 118, 141, 144, 208, 226, 430
MroNI GCCGGC 1 cut(s) 365
MseI TTAA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 2 cut(s) 366, 377
MwoI GCNNNNNNNGC 4 cut(s) 344, 353, 356, 362
NaeI GCCGGC 1 cut(s) 367
NdeII GATC 4 cut(s) 25, 319, 470, 477
NgoMIV GCCGGC 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 367
PfeI GAWTC 4 cut(s) 49, 74, 278, 395
PkrI GCNGC 4 cut(s) 349, 358, 382, 404
PsiI TTATAA 1 cut(s) 252
Psp124BI GAGCTC 2 cut(s) 45, 489
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 374
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SacI GAGCTC 2 cut(s) 45, 489
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 4 cut(s) 348, 357, 381, 403
Sau3AI GATC 4 cut(s) 25, 319, 470, 477
Sau96I GGNCC 1 cut(s) 374
SduI GDGCHC 2 cut(s) 45, 489
SetI ASST 4 cut(s) 45, 250, 358, 489
SfaNI GCATC 1 cut(s) 294
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 35
SsiI CCGC 3 cut(s) 212, 347, 381
SstI GAGCTC 2 cut(s) 45, 489
TaqI TCGA 4 cut(s) 140, 258, 291, 398
TasI AATT 1 cut(s) 35
TauI GCSGC 2 cut(s) 350, 383
TfiI GAWTC 4 cut(s) 49, 74, 278, 395
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 349
TseI GCWGC 2 cut(s) 356, 402
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.