Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010025

Physical Location & Seq

Genomic Coordinates Forward (+)

13864685 .. 13866610

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTGTCGCAGCCAAAAACCCTAAGCCCTTTGAGTGCACAGACAGAGACGAAGATGGGAAATACAAGCAAGGACCTTCTGCAATTCGAGCACAAAAATGCTTCAACTTCACCTTTAGAAAGCACGCTACTTGTCTGTAAAAATGCCTCAACGAAGAAAGCTCAACCCGAAGGGAAACCCGGCCCTGCTCTTCCTCTTCCCAAAAGCCAAGTTTTGGGACAAGTAAGGGACTTCTTGGGAGTCATATCAGAAGCAAACGAACGACTAAAGCAGGATGCAAAGGATAATCCAGAAAACTATGATATTGAAGTGCTCACTGGAAATGAATCTCGAGTCGTTAATATGGAGTTGATGCTGGGAGTTGCTCGATCTTCAAACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4598

Protein Analysis

128

Amino Acids

13.77

Weight (kDa)

6.59

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71430
fragaria_vesca	FvH4_2g02960 FvH4_2g02960
malus_domestica	MD05G1109000.v1.1 MD10G1112800.v1.1
prunus_persica	Prupe.8G152600_v2.0.a1
pyrus_communis	pycom05g10480 pycom10g09760
rosa_chinensis	RchiOBHm_Chr6g0247751
rosa_laevigata	RLG00000015182
rosa_multiflora	Rmu_sc0004057.1_g000006 Rmu_sc0009569.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433270 Rroxscaffold_7G00213690
rosa_rugosa	Rorug05G0528300
rosa_samantha	Rh6AG043400 Rh6BG038000 Rh6CG036800 Rh6DG033800
rosa_wichuraiana	Rw6G003730 Rw6G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	105, 308, 375
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	3 cut(s)	40, 93, 315
Alw26I	GTCTC	1 cut(s)	41
Alw44I	GTGCAC	1 cut(s)	36
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	181
ApaLI	GTGCAC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	73, 182
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	102
AvaI	CYCGRG	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	40
Bbv12I	GWGCWC	3 cut(s)	40, 93, 315
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	73, 182
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	265, 342
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	3 cut(s)	40, 93, 315
BsiHKCI	CYCGRG	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	2 cut(s)	231, 242
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	231, 242
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	3 cut(s)	40, 93, 315
Bsp143I	GATC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	183
BspQI	GCTCTTC	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	1 cut(s)	368
Bst6I	CTCTTC	2 cut(s)	195, 201
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	371
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	368
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	73, 182
CviJI	RGCY	5 cut(s)	13, 27, 161, 183, 207
CviKI_1	RGCY	5 cut(s)	13, 27, 161, 183, 207
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	370
DpnII	GATC	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	195, 201
EarI	CTCTTC	2 cut(s)	195, 201
Eco47I	GGWCC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	41
FaiI	YATR	3 cut(s)	245, 300, 344
FaqI	GGGAC	2 cut(s)	231, 242
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	180
HinfI	GANTC	3 cut(s)	240, 326, 333
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	290, 330, 381
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	86, 164
HpyCH4V	TGCA	3 cut(s)	38, 82, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	1 cut(s)	23
Kzo9I	GATC	1 cut(s)	368
LguI	GCTCTTC	1 cut(s)	195
LpnPI	CCDG	6 cut(s)	193, 198, 257, 303, 303, 341
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	265, 342
MalI	GATC	1 cut(s)	370
MboI	GATC	1 cut(s)	368
MboII	GAAGA	5 cut(s)	64, 166, 182, 188, 363
MhlI	GDGCHC	3 cut(s)	40, 93, 315
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	249, 342
MnlI	CCTC	2 cut(s)	157, 204
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	1 cut(s)	88
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	368
PaeR7I	CTCGAG	1 cut(s)	330
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	2 cut(s)	248, 341
PpsI	GAGTC	2 cut(s)	248, 341
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	73, 182
PspPPI	RGGWCCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	368
Sau96I	GGNCC	2 cut(s)	73, 182
SchI	GAGTC	2 cut(s)	249, 342
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	3 cut(s)	40, 93, 315
SetI	ASST	3 cut(s)	78, 115, 163
SfaNI	GCATC	2 cut(s)	265, 342
Sfr274I	CTCGAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	73
SlaI	CTCGAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
Sse9I	AATT	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	178
TaqI	TCGA	3 cut(s)	87, 331, 367
TasI	AATT	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	214
VneI	GTGCAC	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.