Rw6G003760

Domain of unknown function (DUF4598)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010025
Physical Location & Seq
Reverse (-)
6151919 .. 6154123
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003760.1

Sequence Viewer

Length: 408 bp
ATGAGGAATTTCTTGGGAGTCATGTCAGAAGCTAATGAAAAATTGCAGCTTGATGCGAAGGATAATCCAGAAAAATATGACATCGAAGCGCTCACTGGAGATGAGTCTCAAGTCGTTAGTGTGGAATGTATGTTGGGTGTTGTTGATCTTCAAACTCCTGAGGCTGTGGCTGCAGCAGAAGCTGCAGTTTCTGGTTATCAGCCTGTGATACCTGTGGAGGATAGCAGTAGTGGAGAGGAATCAGATGATAGTAGCGGTGATGATGAAGAAGAAAGTAGCGATGACAATGAAGATGATGAAAGCAATGAGGATAAGAAAACATCCTCTCCGGACAAAATTAATTCTTTAAGTGAAGAATTTAATAATAAGCGGCCCAAAAAGCGGCCTAAAATTATTGAGCTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4598

Protein Analysis

135

Amino Acids

14.73

Weight (kDa)

4.05

Isoelectric Point (pI)

77.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOPCHAP1 PF15370 2 - 134 5e-11 NOP protein chaperone 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 3 cut(s) 255, 370, 382
AcsI RAATTY 2 cut(s) 7, 356
AfeI AGCGCT 1 cut(s) 90
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 4 cut(s) 32, 49, 182, 400
AluI AGCT 4 cut(s) 32, 49, 182, 400
Alw26I GTCTC 1 cut(s) 111
AlwNI CAGNNNCTG 2 cut(s) 182, 191
Aor13HI TCCGGA 1 cut(s) 328
Aor51HI AGCGCT 1 cut(s) 90
AoxI GGCC 2 cut(s) 371, 383
ApeKI GCWGC 4 cut(s) 46, 170, 173, 182
ApoI RAATTY 2 cut(s) 7, 356
AseI ATTAAT 1 cut(s) 339
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 159
BbvI GCAGC 4 cut(s) 58, 157, 169, 185
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 2 cut(s) 171, 183
BfoI RGCGCY 1 cut(s) 92
BisI GCNGC 6 cut(s) 47, 171, 174, 183, 371, 383
BlsI GCNGC 6 cut(s) 48, 172, 175, 184, 372, 384
BmgT120I GGNCC 1 cut(s) 372
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 328
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 100
Bse21I CCTNAGG 1 cut(s) 159
Bse3DI GCAATG 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 328
BseGI GGATG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 4 cut(s) 58, 157, 169, 185
BshFI GGCC 2 cut(s) 373, 385
BsiSI CCGG 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 2 cut(s) 373, 385
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 3 cut(s) 255, 370, 382
BspANI GGCC 2 cut(s) 373, 385
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 328
BspMAI CTGCAG 2 cut(s) 175, 187
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 145
BstAPI GCANNNNNTGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 320
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 4 cut(s) 170, 179, 182, 379
BstSFI CTRYAG 2 cut(s) 171, 183
BstV1I GCAGC 4 cut(s) 58, 157, 169, 185
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 2 cut(s) 373, 385
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 93
CaiI CAGNNNCTG 2 cut(s) 182, 191
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 372
CviAII CATG 1 cut(s) 22
CviJI RGCY 9 cut(s) 32, 49, 164, 170, 182, 202, 373, 385, 400
CviKI_1 RGCY 9 cut(s) 32, 49, 164, 170, 182, 202, 373, 385, 400
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eco47III AGCGCT 1 cut(s) 90
Eco81I CCTNAGG 1 cut(s) 159
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 78, 131, 406
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 6 cut(s) 47, 171, 174, 183, 371, 383
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 6 cut(s) 47, 171, 174, 183, 371, 383
GlaI GCGC 1 cut(s) 90
GluI GCNGC 6 cut(s) 47, 171, 174, 183, 371, 383
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 92
HaeIII GGCC 2 cut(s) 373, 385
HapII CCGG 1 cut(s) 329
HhaI GCGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 3 cut(s) 18, 104, 239
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 28, 244
Hpy188III TCNNGA 3 cut(s) 68, 158, 329
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 3 cut(s) 46, 173, 185
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 179, 182, 379
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 81, 81, 171, 177, 216, 225, 342
Lsp1109I GCAGC 4 cut(s) 58, 157, 169, 185
LweI GCATC 1 cut(s) 43
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 5 cut(s) 140, 278, 281, 302, 365
MluCI AATT 6 cut(s) 7, 41, 336, 340, 356, 390
MlyI GAGTC 2 cut(s) 27, 113
MnlI CCTC 5 cut(s) 154, 211, 229, 301, 334
MroI TCCGGA 1 cut(s) 328
MseI TTAA 3 cut(s) 339, 347, 360
MspI CCGG 1 cut(s) 329
MwoI GCNNNNNNNGC 4 cut(s) 170, 179, 182, 379
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 25
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 6 cut(s) 48, 172, 175, 184, 372, 384
PleI GAGTC 2 cut(s) 26, 112
PpsI GAGTC 2 cut(s) 26, 112
PshBI ATTAAT 1 cut(s) 339
PspPI GGNCC 1 cut(s) 372
PstI CTGCAG 2 cut(s) 175, 187
PstNI CAGNNNCTG 2 cut(s) 182, 191
SaqAI TTAA 3 cut(s) 339, 347, 360
SatI GCNGC 6 cut(s) 47, 171, 174, 183, 371, 383
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 2 cut(s) 27, 113
SetI ASST 5 cut(s) 34, 51, 184, 214, 402
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 2 cut(s) 171, 183
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 6 cut(s) 7, 41, 336, 340, 356, 390
SsiI CCGC 3 cut(s) 255, 370, 382
TaqI TCGA 1 cut(s) 84
TasI AATT 6 cut(s) 7, 41, 336, 340, 356, 390
TauI GCSGC 2 cut(s) 373, 385
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 3 cut(s) 339, 347, 360
Tru9I TTAA 3 cut(s) 339, 347, 360
TscAI CASTG 1 cut(s) 100
TseI GCWGC 4 cut(s) 46, 170, 173, 182
TspDTI ATGAA 5 cut(s) 51, 279, 303, 312, 393
TspRI CASTG 1 cut(s) 100
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 2 cut(s) 7, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.