Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010025

Physical Location & Seq

Genomic Coordinates Reverse (-)

6269220 .. 6270967

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG038000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGAACTCCAAGTAAAGATCTTCTGCAATTGGAGCACACCAAGTCCTCAATTTCACCGCTGGAATCCACACTACTTGTTTGTAAAAATGAATCCCAGCCTGCCCAAACAAAGAAGCCCATAATTGCTCCTCCTTCCAAAAGCCGGTTGTTGGGAAAAATGAGGAACTTCTTGGGAGTCATGTCAGAAGCTAATGAAAAATTGCAGCTTGATGCGAAGGATAATCCAGAAAAATATGACATCGAAGCGCTCACCGGAGATGAGTCTCAAGTCGTTAGTGTGGTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACAGACTGTGGTTGTTGATTCTATTGGATTTATAACTGATTCCTGGCGCACTCCAATTGGCAGGAATGTATGTTGGGTGTTGTTGATCTTCAAACTCCTGAGGCTGTGGCTGCAGCAGAAGCTGCAGTTTCTGGTTATCAGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4598

Protein Analysis

158

Amino Acids

17.69

Weight (kDa)

8.58

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71430
fragaria_vesca	FvH4_2g02960 FvH4_2g02960
malus_domestica	MD05G1109000.v1.1 MD10G1112800.v1.1
prunus_persica	Prupe.8G152600_v2.0.a1
pyrus_communis	pycom05g10480 pycom10g09760
rosa_chinensis	RchiOBHm_Chr6g0247751
rosa_laevigata	RLG00000015182
rosa_multiflora	Rmu_sc0004057.1_g000006 Rmu_sc0009569.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433270 Rroxscaffold_7G00213690
rosa_rugosa	Rorug05G0528300
rosa_samantha	Rh6AG043400 Rh6BG038000 Rh6CG036800 Rh6DG033800
rosa_wichuraiana	Rw6G003730 Rw6G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	362
AciI	CCGC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	144, 151
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	3 cut(s)	191, 208, 451
AluI	AGCT	3 cut(s)	191, 208, 451
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	270, 289
AlwNI	CAGNNNCTG	2 cut(s)	451, 460
Aor51HI	AGCGCT	1 cut(s)	249
ApeKI	GCWGC	4 cut(s)	205, 439, 442, 451
AspLEI	GCGC	2 cut(s)	250, 378
AsuHPI	GGTGA	2 cut(s)	48, 244
AxyI	CCTNAGG	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	217, 426, 438, 454
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	2 cut(s)	270, 289
BfmI	CTRYAG	2 cut(s)	440, 452
BfoI	RGCGCY	1 cut(s)	251
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	206, 440, 443, 452
BlsI	GCNGC	4 cut(s)	207, 441, 444, 453
Bme1390I	CCNGG	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 151
Bse118I	RCCGGY	1 cut(s)	144
Bse21I	CCTNAGG	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	373
BseLI	CCNNNNNNNGG	2 cut(s)	144, 151
BseMII	CTCAG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	217, 426, 438, 454
BseYI	CCCAGC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	145, 255
BslI	CCNNNNNNNGG	2 cut(s)	144, 151
BsmAI	GTCTC	2 cut(s)	270, 289
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	19, 414
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	420
BspMAI	CTGCAG	2 cut(s)	444, 456
BspTNI	GGTCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	144
BssMI	GATC	2 cut(s)	19, 414
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	337
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	250, 378
BstKTI	GATC	2 cut(s)	22, 417
BstMAI	GTCTC	2 cut(s)	270, 289
BstMBI	GATC	2 cut(s)	19, 414
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 439, 448, 451
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstSFI	CTRYAG	2 cut(s)	440, 452
BstV1I	GCAGC	4 cut(s)	217, 426, 438, 454
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	2 cut(s)	451, 460
CfoI	GCGC	2 cut(s)	250, 378
Cfr10I	RCCGGY	1 cut(s)	144
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	9 cut(s)	100, 118, 144, 191, 208, 433, 439, 451, 471
CviKI_1	RGCY	9 cut(s)	100, 118, 144, 191, 208, 433, 439, 451, 471
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	2 cut(s)	21, 416
DpnII	GATC	2 cut(s)	19, 414
Eco31I	GGTCTC	1 cut(s)	289
Eco47III	AGCGCT	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	371
FaeI	CATG	1 cut(s)	184
FaiI	YATR	5 cut(s)	122, 182, 237, 362, 400
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	206, 440, 443, 452
Fsp4HI	GCNGC	4 cut(s)	206, 440, 443, 452
GlaI	GCGC	2 cut(s)	249, 377
GluI	GCNGC	4 cut(s)	206, 440, 443, 452
GsaI	CCCAGC	1 cut(s)	100
HaeII	RGCGCY	1 cut(s)	251
HapII	CCGG	2 cut(s)	145, 255
HhaI	GCGC	2 cut(s)	250, 378
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	2 cut(s)	248, 376
HinP1I	GCGC	2 cut(s)	248, 376
HinfI	GANTC	6 cut(s)	65, 92, 177, 263, 347, 368
HpaII	CCGG	2 cut(s)	145, 255
HphI	GGTGA	2 cut(s)	48, 244
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	2 cut(s)	227, 427
HpyAV	CCTTC	2 cut(s)	144, 211
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	4 cut(s)	28, 205, 442, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 439, 448, 451
HpyF3I	CTNAG	1 cut(s)	428
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	2 cut(s)	248, 376
Kzo9I	GATC	2 cut(s)	19, 414
LmnI	GCTCC	2 cut(s)	34, 133
Lsp1109I	GCAGC	4 cut(s)	217, 426, 438, 454
LweI	GCATC	1 cut(s)	202
MalI	GATC	2 cut(s)	21, 416
MboI	GATC	2 cut(s)	19, 414
MboII	GAAGA	2 cut(s)	14, 409
MfeI	CAATTG	2 cut(s)	29, 384
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	5 cut(s)	29, 51, 123, 200, 384
MlyI	GAGTC	2 cut(s)	186, 272
MnlI	CCTC	4 cut(s)	58, 141, 156, 423
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	145, 255
MspR9I	CCNGG	1 cut(s)	373
MunI	CAATTG	2 cut(s)	29, 384
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	4 cut(s)	34, 439, 448, 451
NdeII	GATC	2 cut(s)	19, 414
NlaIII	CATG	1 cut(s)	184
PfeI	GAWTC	4 cut(s)	65, 92, 347, 368
PkrI	GCNGC	4 cut(s)	207, 441, 444, 453
PleI	GAGTC	2 cut(s)	185, 271
PpsI	GAGTC	2 cut(s)	185, 271
PsiI	TTATAA	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	371
PstI	CTGCAG	2 cut(s)	444, 456
PstNI	CAGNNNCTG	2 cut(s)	451, 460
PsuI	RGATCY	1 cut(s)	19
SatI	GCNGC	4 cut(s)	206, 440, 443, 452
Sau3AI	GATC	2 cut(s)	19, 414
SchI	GAGTC	2 cut(s)	186, 272
ScrFI	CCNGG	1 cut(s)	373
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	3 cut(s)	193, 210, 453
SfaNI	GCATC	1 cut(s)	202
SfcI	CTRYAG	2 cut(s)	440, 452
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	5 cut(s)	29, 51, 123, 200, 384
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	243
TasI	AATT	5 cut(s)	29, 51, 123, 200, 384
TfiI	GAWTC	4 cut(s)	65, 92, 347, 368
TseI	GCWGC	4 cut(s)	205, 439, 442, 451
TspDTI	ATGAA	2 cut(s)	105, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.