AT1G71730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011980
Physical Location & Seq
Reverse (-)
26985969 .. 26986909
941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71730.1

Sequence Viewer

Length: 534 bp
ATGCGTCTTCACTCAGCAATTACTCTCCGAAATCTGTTCACCAGAAAGTCTCTCCGAATCCCACAGAATCTAAGCATTACCGCTTCCCCGTTATTGATTGGAGATGTCTCCGGTCAAATCAAACCTTCATCAACGTCTCACTATTCGAAATCTAGTCTCTCAGAAGCGTCATCATCATCATCTAGCTCACTAATTTTCCAGATCCCAAACAACGCTTCATTCTTCCTGGAAAATCAGAGGAGATACAGCACCGGCTCCAGCAGCGGTTCACCGCCAGATGTAAACAAGGTAGTGGACGAGATTAATCTCAAGTTCGCTGAAGCTCGTGAAGAGATCGAAATGGCTATGGATGCGAAGGAGACGGTTTACTTCAACGAAGAAGCGGAGTGCGCGAGAGACGCCGTGGCAGAGGTTTTGGAGATGTTTCAAGGTTTGCTCGGGAAAGTAACAGAGAAGGAGAAAGCTTCTCTGCAACGATCCATGGGACTCAAGATCGAACAGCTAAAAGCTGAGCTTGAACAGCTGAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.58

Weight (kDa)

5.38

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 392
AciI CCGC 4 cut(s) 81, 264, 272, 383
AclWI GGATC 2 cut(s) 196, 471
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 399
AgsI TTSAA 3 cut(s) 373, 428, 518
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 7 cut(s) 186, 323, 464, 502, 509, 514, 523
AluI AGCT 7 cut(s) 186, 323, 464, 502, 509, 514, 523
Alw26I GTCTC 6 cut(s) 54, 112, 141, 161, 353, 390
AlwI GGATC 2 cut(s) 196, 471
Ama87I CYCGRG 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 261
AseI ATTAAT 1 cut(s) 303
AspLEI GCGC 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 31, 261
AsuII TTCGAA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 437
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 1 cut(s) 273
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 6 cut(s) 54, 112, 141, 161, 353, 390
BfaI CTAG 2 cut(s) 153, 183
BisI GCNGC 1 cut(s) 262
BlpI GCTNAGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 227
BmeT110I CYCGRG 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 241
Bpu1102I GCTNAGC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 2 cut(s) 293, 473
BsaHI GRCGYC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 402, 480
BsaWI WCCGGW 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 251
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 402, 480
BseGI GGATG 1 cut(s) 355
BseMII CTCAG 3 cut(s) 27, 174, 501
BseRI GAGGAG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 392
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 111, 252
BslFI GGGAC 1 cut(s) 498
BsmAI GTCTC 6 cut(s) 54, 112, 141, 161, 353, 390
BsmBI CGTCTC 3 cut(s) 141, 353, 390
BsmFI GGGAC 1 cut(s) 498
BsoBI CYCGRG 1 cut(s) 437
Bsp119I TTCGAA 1 cut(s) 146
Bsp143I GATC 4 cut(s) 201, 333, 476, 492
Bsp1720I GCTNAGC 1 cut(s) 510
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 4 cut(s) 81, 264, 272, 383
BspCNI CTCAG 3 cut(s) 26, 173, 502
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 2 cut(s) 196, 471
BspT104I TTCGAA 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 402, 480
BssMI GATC 4 cut(s) 201, 333, 476, 492
BssNI GRCGYC 1 cut(s) 399
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 1 cut(s) 324
BstACI GRCGYC 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 146
BstDEI CTNAG 4 cut(s) 13, 71, 160, 510
BstDSI CCRYGG 2 cut(s) 402, 480
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 4 cut(s) 204, 336, 479, 495
BstMAI GTCTC 6 cut(s) 54, 112, 141, 161, 353, 390
BstMBI GATC 4 cut(s) 201, 333, 476, 492
BstMWI GCNNNNNNNGC 5 cut(s) 261, 350, 389, 398, 520
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 225
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BtgI CCRYGG 2 cut(s) 402, 480
BtsCI GGATG 1 cut(s) 355
CfoI GCGC 1 cut(s) 392
Cfr10I RCCGGY 1 cut(s) 251
CseI GACGC 2 cut(s) 156, 407
CviAII CATG 1 cut(s) 481
CviJI RGCY 9 cut(s) 186, 255, 323, 344, 464, 502, 509, 514, 523
CviKI_1 RGCY 9 cut(s) 186, 255, 323, 344, 464, 502, 509, 514, 523
DdeI CTNAG 4 cut(s) 13, 71, 160, 510
DpnI GATC 4 cut(s) 203, 335, 478, 494
DpnII GATC 4 cut(s) 201, 333, 476, 492
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 3 cut(s) 141, 353, 390
FaeI CATG 1 cut(s) 484
FaiI YATR 2 cut(s) 347, 482
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 498
FatI CATG 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 2 cut(s) 153, 183
GlaI GCGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 262
GsuI CTGGAG 1 cut(s) 241
HapII CCGG 2 cut(s) 111, 252
HgaI GACGC 2 cut(s) 156, 407
HhaI GCGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 1 cut(s) 484
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 3 cut(s) 57, 67, 486
HpaII CCGG 2 cut(s) 111, 252
HphI GGTGA 2 cut(s) 31, 261
Hpy166II GTNNAC 5 cut(s) 39, 269, 283, 295, 367
Hpy188I TCNGA 4 cut(s) 29, 56, 163, 237
Hpy188III TCNNGA 4 cut(s) 199, 326, 439, 490
Hpy8I GTNNAC 5 cut(s) 39, 269, 283, 295, 367
HpyAV CCTTC 3 cut(s) 135, 349, 448
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 472
HpyF10VI GCNNNNNNNGC 5 cut(s) 261, 350, 389, 398, 520
HpyF3I CTNAG 4 cut(s) 13, 71, 160, 510
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 1 cut(s) 484
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 4 cut(s) 201, 333, 476, 492
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 8 cut(s) 55, 124, 212, 212, 239, 265, 271, 288
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 340
MaeI CTAG 2 cut(s) 153, 183
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 445
MalI GATC 4 cut(s) 203, 335, 478, 494
MboI GATC 4 cut(s) 201, 333, 476, 492
MboII GAAGA 3 cut(s) 214, 341, 389
MflI RGATCY 1 cut(s) 201
MluCI AATT 2 cut(s) 18, 192
MlyI GAGTC 1 cut(s) 480
MnlI CCTC 2 cut(s) 231, 403
MseI TTAA 1 cut(s) 303
MspA1I CMGCKG 2 cut(s) 264, 523
MspI CCGG 2 cut(s) 111, 252
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 5 cut(s) 261, 350, 389, 398, 520
NcoI CCATGG 1 cut(s) 480
NdeII GATC 4 cut(s) 201, 333, 476, 492
NlaIII CATG 1 cut(s) 484
NlaIV GGNNCC 1 cut(s) 256
NspV TTCGAA 1 cut(s) 146
PfeI GAWTC 2 cut(s) 57, 67
PfoI TCCNGGA 1 cut(s) 225
PkrI GCNGC 1 cut(s) 263
PleI GAGTC 1 cut(s) 480
PpsI GAGTC 1 cut(s) 480
PshBI ATTAAT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 523
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 4 cut(s) 201, 333, 476, 492
SchI GAGTC 1 cut(s) 480
ScrFI CCNGG 1 cut(s) 227
SfaNI GCATC 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 146
SmlI CTYRAG 2 cut(s) 308, 488
SmoI CTYRAG 2 cut(s) 308, 488
Sse9I AATT 2 cut(s) 18, 192
SsiI CCGC 4 cut(s) 81, 264, 272, 383
SspMI CTAG 2 cut(s) 153, 183
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 364
TaiI ACGT 1 cut(s) 137
TaqI TCGA 3 cut(s) 146, 336, 495
TasI AATT 2 cut(s) 18, 192
TfiI GAWTC 2 cut(s) 57, 67
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 261
TspDTI ATGAA 2 cut(s) 117, 207
VspI ATTAAT 1 cut(s) 303
XspI CTAG 2 cut(s) 153, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.