MD05G1035400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011980
Physical Location & Seq
Reverse (-)
5721513 .. 5722040
528 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1035400.v1.1.491

Sequence Viewer

Length: 528 bp
ATGAATCATCAACGTTCACAAATTGCACTTTGCAAATTGCTCTTCCGCCACTTTTCCAACCCTTCTCCGAAGCTCTTCTCCCTCAACTCAATCTCGACGAGTCCGGCTCAGCGCGTTTCCGACTCACCTCCATTGCCGAAACCCCACATTCTTCTCAACACACCCGCTACAAACTCCCACCGTTTTATCCACCCAGCTCTCTCGATTTCAGCGACCCAGTTCGCAGCTCGTCGGAATGTGAGGCAATTCAGTGGCGGGTCGGATGAGTTCGATCAGAACCAAGTGGTGGACACGATCAACCTCAAATTTGCAGAGGCGAGGGAGGAGATAGAGATGGCCATGGAGTCCAAAGAGACTGTTTACTTCGATGAGGAGGCCGAGTGCGCTCGTGATTCCGTGAAGGAAGTGCTGGAATTGTACGAAGATCTATTGGCTAAGGTGCCGGAGAGCAATAAGGCGGCGTTGCAGAGGTCGATGGGGCTCAAGATTGAGCAGTTGAAGGCGGAGCTTCAACAGCTGAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.78

Weight (kDa)

5.78

Isoelectric Point (pI)

59.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 286
AccII CGCG 1 cut(s) 114
AciI CCGC 5 cut(s) 46, 165, 255, 458, 503
AclI AACGTT 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 336
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 2 cut(s) 499, 512
AluBI AGCT 5 cut(s) 73, 197, 227, 508, 517
AluI AGCT 5 cut(s) 73, 197, 227, 508, 517
Alw26I GTCTC 1 cut(s) 347
AoxI GGCC 2 cut(s) 336, 375
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 114, 386
AsuHPI GGTGA 1 cut(s) 117
BalI TGGCCA 1 cut(s) 338
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 483
BauI CACGAG 1 cut(s) 387
BbvI GCAGC 1 cut(s) 236
BccI CCATC 2 cut(s) 328, 469
BcoDI GTCTC 1 cut(s) 347
BglII AGATCT 1 cut(s) 424
BisI GCNGC 2 cut(s) 225, 459
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 2 cut(s) 226, 460
BmiI GGNNCC 1 cut(s) 441
BmrI ACTGGG 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu10I CCTNAGC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 338, 386
BseXI GCAGC 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 338, 377
BshNI GGYRCC 1 cut(s) 439
BsiSI CCGG 2 cut(s) 104, 443
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 2 cut(s) 338, 377
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 3 cut(s) 271, 294, 424
Bsp1720I GCTNAGC 1 cut(s) 108
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 5 cut(s) 46, 165, 255, 458, 503
BspANI GGCC 2 cut(s) 338, 377
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 441
BspQI GCTCTTC 2 cut(s) 47, 80
BspT107I GGYRCC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 131
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 271, 294, 424
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 339
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 182, 358
Bst6I CTCTTC 2 cut(s) 47, 80
BstDEI CTNAG 2 cut(s) 108, 435
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 2 cut(s) 114, 386
BstKTI GATC 3 cut(s) 274, 297, 427
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 3 cut(s) 271, 294, 424
BstMWI GCNNNNNNNGC 2 cut(s) 383, 514
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 2 cut(s) 338, 377
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 256
CfoI GCGC 2 cut(s) 114, 386
Csp6I GTAC 1 cut(s) 418
CviAII CATG 1 cut(s) 340
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 108, 435
DpnI GATC 3 cut(s) 273, 296, 426
DpnII GATC 3 cut(s) 271, 294, 424
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 47, 80
EarI CTCTTC 2 cut(s) 47, 80
EciI GGCGGA 2 cut(s) 35, 518
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 343
FaiI YATR 1 cut(s) 341
FatI CATG 1 cut(s) 339
FauI CCCGC 2 cut(s) 172, 248
Fnu4HI GCNGC 2 cut(s) 225, 459
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 2 cut(s) 225, 459
GlaI GCGC 2 cut(s) 113, 385
GluI GCNGC 2 cut(s) 225, 459
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 338, 377
HapII CCGG 2 cut(s) 104, 443
HhaI GCGC 2 cut(s) 114, 386
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 2 cut(s) 112, 384
HinP1I GCGC 2 cut(s) 112, 384
HinfI GANTC 5 cut(s) 4, 100, 122, 344, 392
HpaII CCGG 2 cut(s) 104, 443
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 3 cut(s) 17, 289, 361
Hpy188I TCNGA 5 cut(s) 69, 121, 234, 262, 276
Hpy188III TCNNGA 4 cut(s) 94, 202, 389, 484
Hpy8I GTNNAC 3 cut(s) 17, 289, 361
Hpy99I CGWCG 2 cut(s) 100, 234
HpyAV CCTTC 3 cut(s) 72, 394, 493
HpyCH4III ACNGT 2 cut(s) 182, 358
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 4 cut(s) 26, 33, 311, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 514
HpyF3I CTNAG 2 cut(s) 108, 435
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 2 cut(s) 112, 384
Kzo9I GATC 3 cut(s) 271, 294, 424
LguI GCTCTTC 2 cut(s) 47, 80
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 5 cut(s) 117, 207, 230, 395, 456
Lsp1109I GCAGC 1 cut(s) 236
MaeII ACGT 1 cut(s) 13
MalI GATC 3 cut(s) 273, 296, 426
MboI GATC 3 cut(s) 271, 294, 424
MboII GAAGA 4 cut(s) 34, 67, 143, 434
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 483
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 5 cut(s) 21, 35, 245, 305, 413
MluNI TGGCCA 1 cut(s) 338
MlyI GAGTC 3 cut(s) 109, 116, 353
MmeI TCCRAC 4 cut(s) 81, 144, 212, 240
Mox20I TGGCCA 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 517
MspI CCGG 2 cut(s) 104, 443
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 383, 514
NcoI CCATGG 1 cut(s) 339
NdeII GATC 3 cut(s) 271, 294, 424
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 1 cut(s) 441
NmeAIII GCCGAG 1 cut(s) 403
PciSI GCTCTTC 2 cut(s) 47, 80
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 2 cut(s) 4, 392
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 2 cut(s) 226, 460
PleI GAGTC 3 cut(s) 108, 116, 352
PpsI GAGTC 3 cut(s) 108, 116, 352
Psp1406I AACGTT 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 441
PsuI RGATCY 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 517
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SapI GCTCTTC 2 cut(s) 47, 80
SatI GCNGC 2 cut(s) 225, 459
Sau3AI GATC 3 cut(s) 271, 294, 424
SchI GAGTC 3 cut(s) 109, 116, 353
SduI GDGCHC 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 5 cut(s) 21, 35, 245, 305, 413
SsiI CCGC 5 cut(s) 46, 165, 255, 458, 503
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 2 cut(s) 182, 358
TaiI ACGT 1 cut(s) 16
TaqI TCGA 5 cut(s) 95, 203, 270, 366, 473
TasI AATT 5 cut(s) 21, 35, 245, 305, 413
TauI GCSGC 1 cut(s) 461
TfiI GAWTC 2 cut(s) 4, 392
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 286
XapI RAATTY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.