MD10G1037700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011980
Physical Location & Seq
Reverse (-)
4970771 .. 4974289
3519 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1037700.v1.1.491

Sequence Viewer

Length: 531 bp
ATGAATCATCAACGTTCACAAATTGCGCTTTGCAAATGGCTCTTCCAGCACTCTTTCCACCCTTCTCCGAAGCTCTTCTCCCTCAACTCGCTCTCGACGAGTCCTACTCGGCGCGTTTCCGACTCAGCTCCATTGCCGGAACCCGAGATTCTTCTCAACACACCCACAACAACTCCCCACCATTTTCTCCATCCAGCTCTCTCGAACTCACCGACCCAGTTCGCAGCTCGCCGGAATGTGAGGCAATTCAGCGGCGGGCCGGAGGAGTTCGATCAGAACCAAGTGGTGGACACGATCAACCTCAAGTTTGCAGAGGCGAGGGAGGAGATAGAGATGGCCATGGAGTCCAAAGAAACTGTTTACTTTGACGAAGAGGCCGAGTGCGCTCGAGATTCTGTGAAGGAAGTGCTGGAATTGTATGAAGGTCTTTTGGCTAAGGTGCCAGAGAGCAATAAGGCGGCGTTGCAGAGGTCGATGGGGCTCAAGATTGAGCAGCTCAAGGCTGAGCTTCAACAGCTGAATGAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.96

Weight (kDa)

5.4

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccB7I CCANNNNNTGG 1 cut(s) 286
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 252, 255, 458
AclI AACGTT 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 336
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 512
AluBI AGCT 7 cut(s) 73, 128, 197, 227, 496, 508, 517
AluI AGCT 7 cut(s) 73, 128, 197, 227, 496, 508, 517
Ama87I CYCGRG 2 cut(s) 143, 387
AoxI GGCC 3 cut(s) 257, 336, 375
ApeKI GCWGC 2 cut(s) 224, 493
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 3 cut(s) 28, 114, 386
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 201
AvaI CYCGRG 2 cut(s) 143, 387
BalI TGGCCA 1 cut(s) 338
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 236, 505
BccI CCATC 3 cut(s) 198, 328, 469
BisI GCNGC 4 cut(s) 225, 253, 459, 494
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 4 cut(s) 226, 254, 460, 495
BmeT110I CYCGRG 2 cut(s) 143, 387
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 2 cut(s) 141, 441
BmrI ACTGGG 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu10I CCTNAGC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 504
BpuEI CTTGAG 3 cut(s) 287, 467, 482
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 138, 495
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 278, 338
BseXI GCAGC 2 cut(s) 236, 505
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 259, 338, 377
BshNI GGYRCC 1 cut(s) 439
BsiHKCI CYCGRG 2 cut(s) 143, 387
BsiSI CCGG 3 cut(s) 137, 232, 260
BslI CCNNNNNNNGG 1 cut(s) 286
BsnI GGCC 3 cut(s) 259, 338, 377
BsoBI CYCGRG 2 cut(s) 143, 387
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 2 cut(s) 271, 294
Bsp1720I GCTNAGC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 3 cut(s) 252, 255, 458
BspANI GGCC 3 cut(s) 259, 338, 377
BspCNI CTCAG 2 cut(s) 137, 496
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 141, 441
BspQI GCTCTTC 2 cut(s) 47, 80
BspT107I GGYRCC 1 cut(s) 439
BsrDI GCAATG 1 cut(s) 131
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 2 cut(s) 271, 294
BssT1I CCWWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 3 cut(s) 47, 80, 366
BstC8I GCNNGC 2 cut(s) 229, 257
BstDEI CTNAG 3 cut(s) 124, 435, 504
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 3 cut(s) 28, 114, 386
BstKTI GATC 2 cut(s) 274, 297
BstMBI GATC 2 cut(s) 271, 294
BstMWI GCNNNNNNNGC 3 cut(s) 46, 383, 514
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 236, 505
BsuRI GGCC 3 cut(s) 259, 338, 377
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 190
Cac8I GCNNGC 2 cut(s) 229, 257
CfoI GCGC 3 cut(s) 28, 114, 386
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 1 cut(s) 340
DdeI CTNAG 3 cut(s) 124, 435, 504
DpnI GATC 2 cut(s) 273, 296
DpnII GATC 2 cut(s) 271, 294
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 3 cut(s) 47, 80, 366
EarI CTCTTC 3 cut(s) 47, 80, 366
Eco130I CCWWGG 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 483
Eco88I CYCGRG 2 cut(s) 143, 387
EcoT14I CCWWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 1 cut(s) 343
FaiI YATR 2 cut(s) 341, 420
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 4 cut(s) 225, 253, 459, 494
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 4 cut(s) 225, 253, 459, 494
GlaI GCGC 3 cut(s) 27, 113, 385
GluI GCNGC 4 cut(s) 225, 253, 459, 494
HaeIII GGCC 3 cut(s) 259, 338, 377
HapII CCGG 3 cut(s) 137, 232, 260
HhaI GCGC 3 cut(s) 28, 114, 386
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 3 cut(s) 26, 112, 384
HinP1I GCGC 3 cut(s) 26, 112, 384
HinfI GANTC 6 cut(s) 4, 100, 122, 148, 344, 392
HpaII CCGG 3 cut(s) 137, 232, 260
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 3 cut(s) 17, 289, 361
Hpy188I TCNGA 3 cut(s) 69, 121, 276
Hpy188III TCNNGA 4 cut(s) 94, 202, 389, 484
Hpy8I GTNNAC 3 cut(s) 17, 289, 361
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 72, 394, 416
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 33, 311, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 383, 514
HpyF3I CTNAG 3 cut(s) 124, 435, 504
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 3 cut(s) 26, 112, 384
Kzo9I GATC 2 cut(s) 271, 294
LguI GCTCTTC 2 cut(s) 47, 80
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 8 cut(s) 59, 150, 207, 230, 245, 273, 395, 456
Lsp1109I GCAGC 2 cut(s) 236, 505
MaeII ACGT 1 cut(s) 13
MalI GATC 2 cut(s) 273, 296
MboI GATC 2 cut(s) 271, 294
MboII GAAGA 4 cut(s) 34, 67, 143, 383
MhlI GDGCHC 1 cut(s) 483
MlsI TGGCCA 1 cut(s) 338
MluCI AATT 3 cut(s) 21, 245, 413
MluNI TGGCCA 1 cut(s) 338
MlyI GAGTC 3 cut(s) 109, 116, 353
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 9 cut(s) 92, 234, 256, 307, 311, 312, 316, 367, 462
Mox20I TGGCCA 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 338
MspA1I CMGCKG 2 cut(s) 252, 517
MspI CCGG 3 cut(s) 137, 232, 260
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 3 cut(s) 46, 383, 514
NcoI CCATGG 1 cut(s) 339
NdeII GATC 2 cut(s) 271, 294
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 141, 441
NmeAIII GCCGAG 2 cut(s) 88, 403
PaeR7I CTCGAG 1 cut(s) 387
PciSI GCTCTTC 2 cut(s) 47, 80
PcsI WCGNNNNNNNCGW 3 cut(s) 95, 209, 375
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 3 cut(s) 4, 148, 392
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 4 cut(s) 226, 254, 460, 495
PleI GAGTC 3 cut(s) 108, 116, 352
PpsI GAGTC 3 cut(s) 108, 116, 352
Psp1406I AACGTT 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 141, 441
PspPI GGNCC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 517
SapI GCTCTTC 2 cut(s) 47, 80
SatI GCNGC 4 cut(s) 225, 253, 459, 494
Sau3AI GATC 2 cut(s) 271, 294
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 3 cut(s) 109, 116, 353
SduI GDGCHC 1 cut(s) 483
Sfr274I CTCGAG 1 cut(s) 387
SlaI CTCGAG 1 cut(s) 387
SmlI CTYRAG 4 cut(s) 302, 387, 482, 497
SmoI CTYRAG 4 cut(s) 302, 387, 482, 497
Sse9I AATT 3 cut(s) 21, 245, 413
SsiI CCGC 3 cut(s) 252, 255, 458
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 16
TaqI TCGA 5 cut(s) 95, 203, 270, 388, 473
TasI AATT 3 cut(s) 21, 245, 413
TauI GCSGC 2 cut(s) 255, 461
TfiI GAWTC 3 cut(s) 4, 148, 392
TseI GCWGC 2 cut(s) 224, 493
TspDTI ATGAA 2 cut(s) 17, 435
Van91I CCANNNNNTGG 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 387
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.