Rorug06G0078100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011980
Physical Location & Seq
Forward (+)
10438671 .. 10439388
718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0078100.1

Sequence Viewer

Length: 522 bp
ATGCAGAACTCGGCGGCGCACCGTCACCAGGTTGAAGAGAGCTCCAGTGGTCCAGATCCGAAGACGAAGCCCGCTTTACACATCACCAGCCACCACCACGGTCGTCGATCCAGAAAAGGAGAAAAGGCCAAAGTTCCAAAGCAAGACAGCGACGCCGACTTGGTTCTTGATTCAGCACGAAGCTCTTTCTCTCTCGCCTTGAAAGAATGCCAAGACCGTCGATCTAGATCTGAAGCTCTGTCCAAGAAGCTAGACAGGCCGAGACCCGCTTCTTTGGATTTGAACAATGTCACCGCCTCGTCTCCGAGATTGGGGACCTTAAAGAAGAGCTCAATGGCGTCTCGCAAGTTTGGAACCTTCCCAAGTCCCGGAACACCTACCTACCGGCATACTAGTCTTGGAGTGCAGAAGGGTTGGAGCTCGGAGCGAGTTCCGGCCAATGCTAATTTGGGGGGCAGGAAGAATACAACTGCTGCTGCTATGTTGCCATTCAACAATGGGAGGACGTTGCCGTCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

10.84

Isoelectric Point (pI)

63.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AciI CCGC 4 cut(s) 14, 72, 267, 294
AclWI GGATC 2 cut(s) 50, 102
AcoI YGGCCR 1 cut(s) 435
AcuI CTGAAG 1 cut(s) 252
AcyI GRCGYC 2 cut(s) 153, 338
AfiI CCNNNNNNNGG 3 cut(s) 28, 311, 368
AgsI TTSAA 4 cut(s) 35, 202, 283, 493
AhlI ACTAGT 1 cut(s) 392
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 6 cut(s) 42, 183, 236, 250, 330, 420
AluI AGCT 6 cut(s) 42, 183, 236, 250, 330, 420
Alw21I GWGCWC 3 cut(s) 44, 332, 422
Alw26I GTCTC 3 cut(s) 256, 306, 345
AlwI GGATC 2 cut(s) 50, 102
AoxI GGCC 3 cut(s) 126, 257, 435
ApeKI GCWGC 2 cut(s) 473, 476
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 50, 315
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 17, 76, 283
AvaII GGWCC 2 cut(s) 50, 315
BanII GRGCYC 3 cut(s) 44, 332, 422
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 3 cut(s) 44, 332, 422
BbvI GCAGC 2 cut(s) 460, 463
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 29
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 3 cut(s) 256, 306, 345
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 3 cut(s) 225, 251, 393
BglII AGATCT 1 cut(s) 227
BisI GCNGC 3 cut(s) 15, 474, 477
BlsI GCNGC 3 cut(s) 16, 475, 478
Bme1390I CCNGG 2 cut(s) 29, 369
Bme18I GGWCC 2 cut(s) 50, 315
BmgT120I GGNCC 2 cut(s) 50, 315
BmiI GGNNCC 2 cut(s) 316, 355
BmrFI CCNGG 2 cut(s) 29, 369
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 226
BsaHI GRCGYC 2 cut(s) 153, 338
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 97
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 311, 368
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 226
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 226
BseLI CCNNNNNNNGG 3 cut(s) 28, 311, 368
BseNI ACTGG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 460, 463
BsgI GTGCAG 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 3 cut(s) 128, 259, 437
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 3 cut(s) 44, 332, 422
BsiSI CCGG 3 cut(s) 369, 385, 434
BslFI GGGAC 2 cut(s) 328, 351
BslI CCNNNNNNNGG 3 cut(s) 28, 311, 368
BsmAI GTCTC 3 cut(s) 256, 306, 345
BsmBI CGTCTC 2 cut(s) 306, 345
BsmFI GGGAC 2 cut(s) 328, 351
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 3 cut(s) 128, 259, 437
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 3 cut(s) 44, 332, 422
Bsp143I GATC 4 cut(s) 55, 107, 221, 227
BspACI CCGC 4 cut(s) 14, 72, 267, 294
BspANI GGCC 3 cut(s) 128, 259, 437
BspLI GGNNCC 2 cut(s) 316, 355
BspPI GGATC 2 cut(s) 50, 102
BspQI GCTCTTC 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 4 cut(s) 55, 107, 221, 227
BssNI GRCGYC 2 cut(s) 153, 338
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 23, 101, 218
Bst6I CTCTTC 2 cut(s) 30, 320
BstACI GRCGYC 2 cut(s) 153, 338
BstC8I GCNNGC 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 58, 110, 224, 230
BstMAI GTCTC 3 cut(s) 256, 306, 345
BstMBI GATC 4 cut(s) 55, 107, 221, 227
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 27, 367
BstV1I GCAGC 2 cut(s) 460, 463
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 2 cut(s) 55, 227
BstYI RGATCY 2 cut(s) 55, 227
BsuRI GGCC 3 cut(s) 128, 259, 437
BtgI CCRYGG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 2 cut(s) 50, 315
CseI GACGC 2 cut(s) 161, 327
CsiI ACCWGGT 1 cut(s) 27
DpnI GATC 4 cut(s) 57, 109, 223, 229
DpnII GATC 4 cut(s) 55, 107, 221, 227
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 30, 320
EarI CTCTTC 2 cut(s) 30, 320
Ecl136II GAGCTC 3 cut(s) 42, 330, 420
Eco24I GRGCYC 3 cut(s) 44, 332, 422
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 50, 315
Eco53kI GAGCTC 3 cut(s) 42, 330, 420
Eco57I CTGAAG 1 cut(s) 252
EcoICRI GAGCTC 3 cut(s) 42, 330, 420
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 27
EcoT38I GRGCYC 3 cut(s) 44, 332, 422
Esp3I CGTCTC 2 cut(s) 306, 345
FaiI YATR 2 cut(s) 390, 482
FaqI GGGAC 2 cut(s) 328, 351
FauI CCCGC 2 cut(s) 79, 274
Fnu4HI GCNGC 3 cut(s) 15, 474, 477
FriOI GRGCYC 3 cut(s) 44, 332, 422
Fsp4HI GCNGC 3 cut(s) 15, 474, 477
FspBI CTAG 3 cut(s) 225, 251, 393
GlaI GCGC 1 cut(s) 18
GluI GCNGC 3 cut(s) 15, 474, 477
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 3 cut(s) 128, 259, 437
HapII CCGG 3 cut(s) 369, 385, 434
HgaI GACGC 2 cut(s) 161, 327
HhaI GCGC 1 cut(s) 19
Hin1I GRCGYC 2 cut(s) 153, 338
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 1 cut(s) 170
HpaII CCGG 3 cut(s) 369, 385, 434
HphI GGTGA 3 cut(s) 17, 76, 283
Hpy188I TCNGA 4 cut(s) 60, 232, 306, 424
Hpy188III TCNNGA 4 cut(s) 53, 111, 167, 225
Hpy99I CGWCG 4 cut(s) 108, 155, 222, 517
HpyAV CCTTC 2 cut(s) 367, 403
HpyCH4III ACNGT 3 cut(s) 23, 101, 218
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 2 cut(s) 4, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 2 cut(s) 153, 338
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 4 cut(s) 55, 107, 221, 227
LguI GCTCTTC 1 cut(s) 320
LmnI GCTCC 3 cut(s) 47, 417, 424
Lsp1109I GCAGC 2 cut(s) 460, 463
MabI ACCWGGT 1 cut(s) 27
MaeI CTAG 3 cut(s) 225, 251, 393
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 2 cut(s) 23, 289
MalI GATC 4 cut(s) 57, 109, 223, 229
MboI GATC 4 cut(s) 55, 107, 221, 227
MboII GAAGA 4 cut(s) 47, 73, 337, 472
MflI RGATCY 2 cut(s) 55, 227
MhlI GDGCHC 3 cut(s) 44, 332, 422
MluCI AATT 1 cut(s) 445
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 2 cut(s) 307, 495
MseI TTAA 1 cut(s) 320
MspI CCGG 3 cut(s) 369, 385, 434
MspR9I CCNGG 2 cut(s) 29, 369
Mva1269I GAATGC 1 cut(s) 212
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 369
NdeII GATC 4 cut(s) 55, 107, 221, 227
NlaIV GGNNCC 2 cut(s) 316, 355
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 23, 289
PciSI GCTCTTC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PctI GAATGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 3 cut(s) 16, 475, 478
PpuMI RGGWCCY 1 cut(s) 315
Psp124BI GAGCTC 3 cut(s) 44, 332, 422
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 316, 355
PspPI GGNCC 2 cut(s) 50, 315
PspPPI RGGWCCY 1 cut(s) 315
PsuI RGATCY 2 cut(s) 55, 227
SacI GAGCTC 3 cut(s) 44, 332, 422
SapI GCTCTTC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 3 cut(s) 15, 474, 477
Sau3AI GATC 4 cut(s) 55, 107, 221, 227
Sau96I GGNCC 2 cut(s) 50, 315
ScrFI CCNGG 2 cut(s) 29, 369
SduI GDGCHC 3 cut(s) 44, 332, 422
SexAI ACCWGGT 1 cut(s) 27
SinI GGWCC 2 cut(s) 50, 315
SpeI ACTAGT 1 cut(s) 392
Sse9I AATT 1 cut(s) 445
SsiI CCGC 4 cut(s) 14, 72, 267, 294
SspMI CTAG 3 cut(s) 225, 251, 393
SstI GAGCTC 3 cut(s) 44, 332, 422
StyD4I CCNGG 2 cut(s) 27, 367
TaaI ACNGT 3 cut(s) 23, 101, 218
TaiI ACGT 1 cut(s) 509
TaqI TCGA 3 cut(s) 106, 220, 515
TasI AATT 1 cut(s) 445
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 2 cut(s) 23, 289
TseI GCWGC 2 cut(s) 473, 476
Tsp45I GTSAC 2 cut(s) 23, 289
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 50, 315
XbaI TCTAGA 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XspI CTAG 3 cut(s) 225, 251, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.