Rh6CG197200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011980
Physical Location & Seq
Forward (+)
32837720 .. 32838870
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG197200.1

Sequence Viewer

Length: 453 bp
ATGCATCGACGATCGATTTGCAAATTGCTTCTGAGACACCACCGCTTCTCCAAGCTCTCTTCCCTCAACTTCTCAACTCAGCGCGTTTTGCACTCCACTCCATTTCCAAAACCCACCACATATTTCCACCCTACTCTCTCAAACTCACCGACCCAGTTCGTAACTCGCCGCCAATTCAGCGGTTCAGGTGATTTCGATCAGAATAAAGAGGTGGACATGATCAATCTCAAGTTTGCAGAGGCAAGGGAGGAGATAGAGATGGCCATGGAGTCCAAAGAGACCGTCTATTTTGATGAAGAGGCTGCTTGTGCTCGCACTGCTGTCAATGAAGTTCTCGACAGCTATGAAGCTTTGTTGGCCAAGCTGACGGAAGACAAAAGGGCTGCAGTGCAGAGGTCCATGGGCCTCAAGATTGAGCAGTTGAAGGCTGAAATCGAACAGCTGAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.33

Weight (kDa)

6.53

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AciI CCGC 3 cut(s) 43, 169, 180
AcoI YGGCCR 2 cut(s) 261, 357
AgsI TTSAA 1 cut(s) 424
AluBI AGCT 5 cut(s) 55, 342, 350, 364, 442
AluI AGCT 5 cut(s) 55, 342, 350, 364, 442
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 2 cut(s) 28, 272
AoxI GGCC 3 cut(s) 261, 357, 403
ApeKI GCWGC 2 cut(s) 302, 383
ArsI GACNNNNNNTTYG 3 cut(s) 32, 267, 299
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 396, 403
AsuHPI GGTGA 2 cut(s) 138, 200
AvaII GGWCC 1 cut(s) 396
BalI TGGCCA 2 cut(s) 263, 359
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 289, 370
BccI CCATC 1 cut(s) 253
BcgI CGANNNNNNTGC 1 cut(s) 34
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 28, 272
BfmI CTRYAG 1 cut(s) 384
BisI GCNGC 3 cut(s) 169, 303, 384
BlsI GCNGC 3 cut(s) 170, 304, 385
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 2 cut(s) 396, 403
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 212, 392
Bsa29I ATCGAT 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 264, 399
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 264, 399
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 2 cut(s) 23, 92
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 289, 370
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 263, 359, 405
BshVI ATCGAT 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 313
BsmAI GTCTC 2 cut(s) 28, 272
BsnI GGCC 3 cut(s) 263, 359, 405
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 11, 196, 219
Bsp19I CCATGG 2 cut(s) 264, 399
BspACI CCGC 3 cut(s) 43, 169, 180
BspANI GGCC 3 cut(s) 263, 359, 405
BspCNI CTCAG 2 cut(s) 24, 91
BspDI ATCGAT 1 cut(s) 14
BspFNI CGCG 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 2 cut(s) 264, 399
BssMI GATC 3 cut(s) 11, 196, 219
BssT1I CCWWGG 2 cut(s) 264, 399
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 64, 291
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 32, 78
BstDSI CCRYGG 2 cut(s) 264, 399
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 3 cut(s) 14, 199, 222
BstMAI GTCTC 2 cut(s) 28, 272
BstMBI GATC 3 cut(s) 11, 196, 219
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 5 cut(s) 88, 177, 308, 317, 356
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 289, 370
BstV2I GAAGAC 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 3 cut(s) 263, 359, 405
BsuTUI ATCGAT 1 cut(s) 14
BtgI CCRYGG 2 cut(s) 264, 399
BtsI GCAGTG 2 cut(s) 315, 393
BtsIMutI CAGTG 2 cut(s) 315, 393
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 2 cut(s) 396, 403
ClaI ATCGAT 1 cut(s) 14
CviAII CATG 3 cut(s) 217, 265, 400
DdeI CTNAG 2 cut(s) 32, 78
DpnI GATC 3 cut(s) 13, 198, 221
DpnII GATC 3 cut(s) 11, 196, 219
EaeI YGGCCR 2 cut(s) 261, 357
Eam1104I CTCTTC 2 cut(s) 64, 291
EarI CTCTTC 2 cut(s) 64, 291
Eco130I CCWWGG 2 cut(s) 264, 399
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 264, 399
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 264, 399
FaeI CATG 3 cut(s) 220, 268, 403
FaiI YATR 5 cut(s) 121, 218, 266, 345, 401
FatI CATG 3 cut(s) 216, 264, 399
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 169, 303, 384
Fsp4HI GCNGC 3 cut(s) 169, 303, 384
GlaI GCGC 1 cut(s) 83
GluI GCNGC 3 cut(s) 169, 303, 384
HaeIII GGCC 3 cut(s) 263, 359, 405
HhaI GCGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 220, 268, 403
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 1 cut(s) 269
HphI GGTGA 2 cut(s) 138, 200
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 33, 201
Hpy188III TCNNGA 2 cut(s) 335, 409
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 6 cut(s) 4, 21, 91, 236, 386, 391
HpyF10VI GCNNNNNNNGC 5 cut(s) 88, 177, 308, 317, 356
HpyF3I CTNAG 2 cut(s) 32, 78
Hsp92II CATG 3 cut(s) 220, 268, 403
HspAI GCGC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 3 cut(s) 11, 196, 219
LpnPI CCDG 2 cut(s) 167, 171
Lsp1109I GCAGC 2 cut(s) 289, 370
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 13, 198, 221
MboI GATC 3 cut(s) 11, 196, 219
MboII GAAGA 3 cut(s) 51, 308, 383
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 2 cut(s) 263, 359
MluCI AATT 2 cut(s) 23, 173
MluNI TGGCCA 2 cut(s) 263, 359
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 7 cut(s) 74, 202, 232, 241, 292, 387, 416
Mox20I TGGCCA 2 cut(s) 263, 359
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 2 cut(s) 263, 359
Msp20I TGGCCA 2 cut(s) 263, 359
MspA1I CMGCKG 2 cut(s) 180, 442
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 5 cut(s) 88, 177, 308, 317, 356
NcoI CCATGG 2 cut(s) 264, 399
NdeII GATC 3 cut(s) 11, 196, 219
NlaIII CATG 3 cut(s) 220, 268, 403
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 170, 304, 385
Ple19I CGATCG 1 cut(s) 14
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PspPI GGNCC 2 cut(s) 396, 403
PstI CTGCAG 1 cut(s) 388
PvuI CGATCG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 442
SatI GCNGC 3 cut(s) 169, 303, 384
Sau3AI GATC 3 cut(s) 11, 196, 219
Sau96I GGNCC 2 cut(s) 396, 403
SchI GAGTC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 313
SetI ASST 8 cut(s) 57, 190, 213, 344, 352, 366, 398, 444
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 227, 407
SmoI CTYRAG 2 cut(s) 227, 407
Sse9I AATT 2 cut(s) 23, 173
SsiI CCGC 3 cut(s) 43, 169, 180
StyI CCWWGG 2 cut(s) 264, 399
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 5 cut(s) 7, 14, 195, 336, 435
TasI AATT 2 cut(s) 23, 173
TauI GCSGC 1 cut(s) 171
TscAI CASTG 2 cut(s) 322, 393
TseI GCWGC 2 cut(s) 302, 383
TspDTI ATGAA 3 cut(s) 309, 342, 360
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 2 cut(s) 322, 393
VpaK11BI GGWCC 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.