pycom10g02560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011980
Physical Location & Seq
Reverse (-)
2929860 .. 2930618
759 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02560.2

Sequence Viewer

Length: 642 bp
ATGCTTTTAGGCCGTAATATGTCGCGATACTTCGAATGTTTTAACCGGTATTCCGGAGCCCCAATTACTGTTTCTGTTCGGCAAGTCGGGAGAGCAACAACGAATCATCAACGTTCACAAACTGCGCTTTGCAAATGGCTCTTCCAGCACTCTTTCCACCCTTCTCCGAAGCTCTTATCCCTCAACTCGCTCTCGACGAGTCCTACTCGGCGCGTTTCCGACTCAGCTCTATTGCCGGAACCCGAGATTCTTCTCAACACACCCACAACAACTCCCCACCATTTTCTCCATCCAGCTCTCTCGAACTCACCGACCCAGTTCACAGCTCTCAGGAATGTGAGGCAATTCAGCGGCGGGCCGGAGGAGTTCGATCAGAACCAAGTGGTGGACACGATCAACCTCAAGTTTGTAGAGGCGAGGGAGGAGATAGAGATGGCCATGGAGTCCAAGGAAACTTTTTACTTTGACGAAGAGGCCGAATGCGCTCGAGATTCTGTGAAGGAAGTGCTGGAATTGTATGAAGGTCTATTGGCTAAGGTGCCGGACAGCAATAAGGCGGCGTTGCAGAGGTCGATGGGGCTCAAGATTGAGCAGCTCAAGATTGAGCAGCTCAAGGCTGAGCTTCAACAGCTGAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.24

Weight (kDa)

5.91

Isoelectric Point (pI)

60.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 538
AccB7I CCANNNNNTGG 1 cut(s) 385
AccII CGCG 2 cut(s) 25, 213
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 3 cut(s) 351, 354, 557
AclI AACGTT 1 cut(s) 112
AcoI YGGCCR 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 385
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 1 cut(s) 626
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 8 cut(s) 172, 227, 296, 326, 595, 610, 622, 631
AluI AGCT 8 cut(s) 172, 227, 296, 326, 595, 610, 622, 631
Ama87I CYCGRG 2 cut(s) 242, 486
Aor13HI TCCGGA 1 cut(s) 53
AoxI GGCC 4 cut(s) 10, 356, 435, 474
ApeKI GCWGC 2 cut(s) 592, 607
AsiGI ACCGGT 1 cut(s) 45
AspLEI GCGC 3 cut(s) 127, 213, 485
AspS9I GGNCC 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 300
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 2 cut(s) 242, 486
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 538
BanII GRGCYC 2 cut(s) 61, 582
BbvI GCAGC 2 cut(s) 604, 619
BccI CCATC 3 cut(s) 297, 427, 568
BisI GCNGC 4 cut(s) 352, 558, 593, 608
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 4 cut(s) 353, 559, 594, 609
BmeT110I CYCGRG 2 cut(s) 242, 486
BmgT120I GGNCC 1 cut(s) 356
BmiI GGNNCC 3 cut(s) 58, 240, 540
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 190, 222
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 4 cut(s) 386, 566, 581, 596
BsaJI CCNNGG 2 cut(s) 438, 447
BsaWI WCCGGW 2 cut(s) 45, 53
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 53
BseDI CCNNGG 2 cut(s) 438, 447
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMII CTCAG 3 cut(s) 237, 343, 609
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 2 cut(s) 377, 437
BseXI GCAGC 2 cut(s) 604, 619
Bsh1236I CGCG 2 cut(s) 25, 213
BshFI GGCC 4 cut(s) 12, 358, 437, 476
BshNI GGYRCC 1 cut(s) 538
BshTI ACCGGT 1 cut(s) 45
BsiHKCI CYCGRG 2 cut(s) 242, 486
BsiSI CCGG 5 cut(s) 46, 54, 236, 359, 542
BslI CCNNNNNNNGG 1 cut(s) 385
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 4 cut(s) 12, 358, 437, 476
BsoBI CYCGRG 2 cut(s) 242, 486
Bsp119I TTCGAA 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 61, 582
Bsp13I TCCGGA 1 cut(s) 53
Bsp143I GATC 2 cut(s) 370, 393
Bsp1720I GCTNAGC 1 cut(s) 618
Bsp19I CCATGG 1 cut(s) 438
Bsp68I TCGCGA 1 cut(s) 25
BspACI CCGC 3 cut(s) 351, 354, 557
BspANI GGCC 4 cut(s) 12, 358, 437, 476
BspCNI CTCAG 3 cut(s) 236, 342, 610
BspEI TCCGGA 1 cut(s) 53
BspFNI CGCG 2 cut(s) 25, 213
BspLI GGNNCC 3 cut(s) 58, 240, 540
BspQI GCTCTTC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 438, 447
BssMI GATC 2 cut(s) 370, 393
BssT1I CCWWGG 2 cut(s) 438, 447
Bst4CI ACNGT 1 cut(s) 70
Bst6I CTCTTC 2 cut(s) 146, 465
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 4 cut(s) 223, 329, 534, 618
BstDSI CCRYGG 1 cut(s) 438
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 2 cut(s) 25, 213
BstHHI GCGC 3 cut(s) 127, 213, 485
BstKTI GATC 2 cut(s) 373, 396
BstMBI GATC 2 cut(s) 370, 393
BstMWI GCNNNNNNNGC 3 cut(s) 145, 482, 628
BstUI CGCG 2 cut(s) 25, 213
BstV1I GCAGC 2 cut(s) 604, 619
BsuRI GGCC 4 cut(s) 12, 358, 437, 476
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 1 cut(s) 289
BtuMI TCGCGA 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 356
CfoI GCGC 3 cut(s) 127, 213, 485
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 356
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 1 cut(s) 439
DdeI CTNAG 4 cut(s) 223, 329, 534, 618
DpnI GATC 2 cut(s) 372, 395
DpnII GATC 2 cut(s) 370, 393
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 2 cut(s) 146, 465
EarI CTCTTC 2 cut(s) 146, 465
Eco130I CCWWGG 2 cut(s) 438, 447
Eco24I GRGCYC 2 cut(s) 61, 582
Eco88I CYCGRG 2 cut(s) 242, 486
EcoT14I CCWWGG 2 cut(s) 438, 447
EcoT38I GRGCYC 2 cut(s) 61, 582
ErhI CCWWGG 2 cut(s) 438, 447
FaeI CATG 1 cut(s) 442
FaiI YATR 3 cut(s) 20, 440, 519
FatI CATG 1 cut(s) 438
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 4 cut(s) 352, 558, 593, 608
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 2 cut(s) 61, 582
Fsp4HI GCNGC 4 cut(s) 352, 558, 593, 608
GlaI GCGC 3 cut(s) 126, 212, 484
GluI GCNGC 4 cut(s) 352, 558, 593, 608
HaeIII GGCC 4 cut(s) 12, 358, 437, 476
HapII CCGG 5 cut(s) 46, 54, 236, 359, 542
HhaI GCGC 3 cut(s) 127, 213, 485
Hin1II CATG 1 cut(s) 442
Hin6I GCGC 3 cut(s) 125, 211, 483
HinP1I GCGC 3 cut(s) 125, 211, 483
HinfI GANTC 6 cut(s) 103, 199, 221, 247, 443, 491
HpaII CCGG 5 cut(s) 46, 54, 236, 359, 542
HphI GGTGA 1 cut(s) 300
Hpy166II GTNNAC 3 cut(s) 116, 321, 388
Hpy188I TCNGA 3 cut(s) 168, 220, 375
Hpy188III TCNNGA 9 cut(s) 24, 54, 88, 193, 301, 331, 488, 583, 598
Hpy8I GTNNAC 3 cut(s) 116, 321, 388
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 171, 493, 515
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 132, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 482, 628
HpyF3I CTNAG 4 cut(s) 223, 329, 534, 618
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 442
HspAI GCGC 3 cut(s) 125, 211, 483
Kpn2I TCCGGA 1 cut(s) 53
Kzo9I GATC 2 cut(s) 370, 393
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 56
Lsp1109I GCAGC 2 cut(s) 604, 619
MaeII ACGT 1 cut(s) 112
MalI GATC 2 cut(s) 372, 395
MboI GATC 2 cut(s) 370, 393
MboII GAAGA 3 cut(s) 133, 242, 482
MhlI GDGCHC 2 cut(s) 61, 582
MlsI TGGCCA 1 cut(s) 437
MluCI AATT 3 cut(s) 63, 344, 512
MluNI TGGCCA 1 cut(s) 437
MlyI GAGTC 3 cut(s) 208, 215, 452
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 9 cut(s) 191, 333, 355, 406, 410, 411, 415, 466, 561
Mox20I TGGCCA 1 cut(s) 437
MroI TCCGGA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 437
MseI TTAA 1 cut(s) 42
Msp20I TGGCCA 1 cut(s) 437
MspA1I CMGCKG 2 cut(s) 351, 631
MspI CCGG 5 cut(s) 46, 54, 236, 359, 542
Mva1269I GAATGC 1 cut(s) 485
MvnI CGCG 2 cut(s) 25, 213
MwoI GCNNNNNNNGC 3 cut(s) 145, 482, 628
NcoI CCATGG 1 cut(s) 438
NdeII GATC 2 cut(s) 370, 393
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 3 cut(s) 58, 240, 540
NmeAIII GCCGAG 1 cut(s) 187
NruI TCGCGA 1 cut(s) 25
NspV TTCGAA 1 cut(s) 33
PaeR7I CTCGAG 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 3 cut(s) 194, 308, 474
PctI GAATGC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 103, 247, 491
PflMI CCANNNNNTGG 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 4 cut(s) 353, 559, 594, 609
PleI GAGTC 3 cut(s) 207, 215, 451
PpsI GAGTC 3 cut(s) 207, 215, 451
Psp1406I AACGTT 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 58, 240, 540
PspPI GGNCC 1 cut(s) 356
PvuII CAGCTG 1 cut(s) 631
RruI TCGCGA 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 4 cut(s) 352, 558, 593, 608
Sau3AI GATC 2 cut(s) 370, 393
Sau96I GGNCC 1 cut(s) 356
SchI GAGTC 3 cut(s) 208, 215, 452
SduI GDGCHC 2 cut(s) 61, 582
Sfr274I CTCGAG 1 cut(s) 486
SfuI TTCGAA 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 486
SmlI CTYRAG 5 cut(s) 401, 486, 581, 596, 611
SmoI CTYRAG 5 cut(s) 401, 486, 581, 596, 611
Sse9I AATT 3 cut(s) 63, 344, 512
SsiI CCGC 3 cut(s) 351, 354, 557
StyI CCWWGG 2 cut(s) 438, 447
TaaI ACNGT 1 cut(s) 70
TaiI ACGT 1 cut(s) 115
TaqI TCGA 6 cut(s) 33, 194, 302, 369, 487, 572
TasI AATT 3 cut(s) 63, 344, 512
TauI GCSGC 2 cut(s) 354, 560
TfiI GAWTC 3 cut(s) 103, 247, 491
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseI GCWGC 2 cut(s) 592, 607
TspDTI ATGAA 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 385
XhoI CTCGAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.