Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011980

Physical Location & Seq

Genomic Coordinates Reverse (-)

4480100 .. 4483957

Gene Structure 3858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G043100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCATTATCAACATTCACAAGCTTCGCTTTGCAAATTGCTTTTCAGACGCTCTTTCAATGGTTCTCCAAAGCTCTTTTCCCTCAACTCGCTCACAACGAGTCCGGCTCAGTGCGTTTCAGACTCAGCTCCATTGCCGAAACCCAAGACTCCTGAGCTTCTTCTTCACAAACCCACCACAAATTCCCCCCATTTTCTTCACCCGACGTTCTCAAACTCATCCCAGTTCATAAATCGTCATAATCTGAGACAATTCAGCGGTGGGGCGGATGGGTTTGATCAGAACAAAGAGGTGGACATGATCAACCTCAAGTTTGCAGAGGCAAGGGAGGAGATAGAGATGGCCATGGAGTCCAAAGAGACTGTTTATTTTGATGAAGAGGCAGAGTGTGCTCGAACTGCTGTGAAGGAAGTGCTGGACCTGTTTGATGGGCTATTGGCTAAGTCGCCGGAGGACAAAAAGGCAGCATTGCAGAGGGCGATGGGGCTCAAGATTGAGCAGTTGAAGGCTGAGCTGAAACAGTTGGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.95

Weight (kDa)

6.09

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71730
fragaria_vesca	FvH4_2g12890 FvH4_2g12890
malus_domestica	MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica	Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis	pycom10g02560
rosa_chinensis	RchiOBHm_Chr6g0273991
rosa_laevigata	RLG00000013586
rosa_multiflora	Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii	Rroxscaffold_7G00194810
rosa_rugosa	Rorug06G0078100
rosa_samantha	Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana	Rw6G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	258, 266
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	58, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	5 cut(s)	23, 73, 128, 157, 514
AluI	AGCT	5 cut(s)	23, 73, 128, 157, 514
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	241, 353
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	1 cut(s)	181
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	489
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	4 cut(s)	263, 334, 422, 475
BclI	TGATCA	2 cut(s)	277, 300
BcoDI	GTCTC	2 cut(s)	241, 353
BisI	GCNGC	1 cut(s)	465
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmrI	ACTGGG	1 cut(s)	217
BmuI	ACTGGG	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	293, 473
BsaJI	CCNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	223
Bse3DI	GCAATG	2 cut(s)	131, 467
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	3 cut(s)	218, 274, 532
BseMI	GCAATG	2 cut(s)	131, 467
BseMII	CTCAG	5 cut(s)	122, 138, 144, 236, 501
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	476
BshFI	GGCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	104, 449
BsmAI	GTCTC	2 cut(s)	241, 353
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	394, 489
Bsp143I	GATC	2 cut(s)	277, 300
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	2 cut(s)	258, 266
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	5 cut(s)	121, 137, 145, 237, 502
BsrDI	GCAATG	2 cut(s)	131, 467
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	2 cut(s)	277, 300
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	364, 522
Bst6I	CTCTTC	1 cut(s)	372
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstDEI	CTNAG	6 cut(s)	108, 124, 153, 245, 441, 510
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	218, 274, 532
BstKTI	GATC	2 cut(s)	280, 303
BstMAI	GTCTC	2 cut(s)	241, 353
BstMBI	GATC	2 cut(s)	277, 300
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 398
BstV1I	GCAGC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	218, 274, 532
BtsIMutI	CAGTG	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	418
CseI	GACGC	1 cut(s)	57
CviAII	CATG	2 cut(s)	298, 346
DdeI	CTNAG	6 cut(s)	108, 124, 153, 245, 441, 510
DpnI	GATC	2 cut(s)	279, 302
DpnII	GATC	2 cut(s)	277, 300
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	2 cut(s)	301, 349
FaiI	YATR	4 cut(s)	230, 240, 299, 347
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FatI	CATG	2 cut(s)	297, 345
FbaI	TGATCA	2 cut(s)	277, 300
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	2 cut(s)	205, 281
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	1 cut(s)	465
GluI	GCNGC	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	2 cut(s)	104, 449
HgaI	GACGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	301, 349
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	4 cut(s)	100, 122, 148, 350
HpaII	CCGG	2 cut(s)	104, 449
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	4 cut(s)	47, 121, 246, 282
Hpy188III	TCNNGA	2 cut(s)	152, 490
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	400, 499
HpyCH4III	ACNGT	2 cut(s)	364, 522
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	4, 33, 317, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 398
HpyF3I	CTNAG	6 cut(s)	108, 124, 153, 245, 441, 510
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	301, 349
Ksp22I	TGATCA	2 cut(s)	277, 300
Kzo9I	GATC	2 cut(s)	277, 300
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	117, 165, 236, 401, 434, 462
Lsp1109I	GCAGC	1 cut(s)	476
MaeII	ACGT	1 cut(s)	206
MalI	GATC	2 cut(s)	279, 302
MboI	GATC	2 cut(s)	277, 300
MboII	GAAGA	4 cut(s)	152, 155, 188, 389
MhlI	GDGCHC	2 cut(s)	394, 489
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	3 cut(s)	35, 181, 251
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	4 cut(s)	109, 116, 142, 359
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	8 cut(s)	92, 283, 313, 317, 322, 373, 445, 468
Mox20I	TGGCCA	1 cut(s)	344
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	2 cut(s)	104, 449
MwoI	GCNNNNNNNGC	2 cut(s)	389, 398
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	277, 300
NlaIII	CATG	2 cut(s)	301, 349
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	4 cut(s)	108, 116, 142, 358
PpsI	GAGTC	4 cut(s)	108, 116, 142, 358
PspPI	GGNCC	1 cut(s)	418
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	277, 300
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	4 cut(s)	109, 116, 142, 359
SduI	GDGCHC	2 cut(s)	394, 489
SetI	ASST	9 cut(s)	25, 75, 130, 159, 209, 294, 309, 423, 516
SinI	GGWCC	1 cut(s)	418
SmlI	CTYRAG	2 cut(s)	308, 488
SmoI	CTYRAG	2 cut(s)	308, 488
Sse9I	AATT	3 cut(s)	35, 181, 251
SsiI	CCGC	2 cut(s)	258, 266
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	364, 522
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	394
TasI	AATT	3 cut(s)	35, 181, 251
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	217, 390
TspRI	CASTG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	181
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.