FvH4_2g12890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011980
Physical Location & Seq
Forward (+)
11319124 .. 11321904
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12890.t2

Sequence Viewer

Length: 444 bp
ATGCATCAGCGCTCGATTTGCAAATTCCTTCTGAGACATCATCGCATCTCGAAGCTCTCTCCCTTCAACTCCTCGGCTCACCGCATCTTGGACTCCACCTCATTTCCAAAACCCACCACAAATTTCCACCGGACCCTCTCAAACTCACCCACCCAGTTCATACCTCGCCGCCACTTCAGCGATTTCGACCAGAACAAAGAAGTGGACATGATCAATCTCAAGTTTGCAGAGGCAAGAGAGGAGATAGAGATGGCCATGGAGTCCAAAGAGACGGTCTATTTCGATGAAGAGGCTGAGTGTGCTCGGAATGCTGTCAATGAAGTTCTTGAAAGTTATGCGGCGTTGTTGGCCAAGTTGCCTGAGGAAAAAAAGGCCGCAGTGCAGAGGTCCATGGGCCTCAAGATTGAGCAGTTGAAAGCCGAAATCGAACAGCTCAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.08

Weight (kDa)

6.32

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 82, 169, 338, 375
AcoI YGGCCR 2 cut(s) 252, 348
AcsI RAATTY 2 cut(s) 23, 121
AcuI CTGAAG 1 cut(s) 160
AfeI AGCGCT 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 67, 329, 415
AluBI AGCT 2 cut(s) 55, 433
AluI AGCT 2 cut(s) 55, 433
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 28, 263
Aor51HI AGCGCT 1 cut(s) 11
AoxI GGCC 4 cut(s) 252, 348, 372, 394
ApoI RAATTY 2 cut(s) 23, 121
ArsI GACNNNNNNTTYG 2 cut(s) 258, 290
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 3 cut(s) 132, 387, 394
AsuHPI GGTGA 2 cut(s) 71, 138
AvaII GGWCC 2 cut(s) 132, 387
AxyI CCTNAGG 1 cut(s) 360
BalI TGGCCA 2 cut(s) 254, 350
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 244
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 28, 263
BfoI RGCGCY 1 cut(s) 13
BisI GCNGC 3 cut(s) 169, 339, 375
BlsI GCNGC 3 cut(s) 170, 340, 376
Bme18I GGWCC 2 cut(s) 132, 387
BmgT120I GGNCC 3 cut(s) 132, 387, 394
BmiI GGNNCC 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 3 cut(s) 13, 54, 93
BmuI ACTGGG 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 203, 383
BsaJI CCNNGG 3 cut(s) 72, 255, 390
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 154
Bse21I CCTNAGG 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 72, 255, 390
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 3 cut(s) 23, 285, 351
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 2 cut(s) 61, 254
BsgI GTGCAG 1 cut(s) 401
BshFI GGCC 4 cut(s) 254, 350, 374, 396
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 28, 263
BsmBI CGTCTC 1 cut(s) 263
BsmI GAATGC 1 cut(s) 313
BsnI GGCC 4 cut(s) 254, 350, 374, 396
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 210
Bsp19I CCATGG 2 cut(s) 255, 390
BspACI CCGC 4 cut(s) 82, 169, 338, 375
BspANI GGCC 4 cut(s) 254, 350, 374, 396
BspCNI CTCAG 3 cut(s) 24, 286, 352
BspLI GGNNCC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 72, 255, 390
BssMI GATC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 255, 390
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 282
BstDEI CTNAG 3 cut(s) 32, 294, 360
BstDSI CCRYGG 2 cut(s) 255, 390
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 2 cut(s) 28, 263
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 5 cut(s) 18, 177, 299, 308, 347
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 4 cut(s) 254, 350, 374, 396
BtgI CCRYGG 2 cut(s) 255, 390
BtgZI GCGATG 1 cut(s) 26
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 3 cut(s) 132, 387, 394
CviAII CATG 3 cut(s) 208, 256, 391
CviJI RGCY 9 cut(s) 55, 77, 254, 293, 350, 374, 396, 419, 433
CviKI_1 RGCY 9 cut(s) 55, 77, 254, 293, 350, 374, 396, 419, 433
DdeI CTNAG 3 cut(s) 32, 294, 360
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 252, 348
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 2 cut(s) 255, 390
Eco47I GGWCC 2 cut(s) 132, 387
Eco47III AGCGCT 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 255, 390
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 255, 390
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 3 cut(s) 211, 259, 394
FaiI YATR 5 cut(s) 161, 209, 257, 336, 392
FatI CATG 3 cut(s) 207, 255, 390
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 169, 339, 375
Fsp4HI GCNGC 3 cut(s) 169, 339, 375
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 169, 339, 375
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 4 cut(s) 254, 350, 374, 396
HapII CCGG 1 cut(s) 130
HhaI GCGC 1 cut(s) 12
Hin1II CATG 3 cut(s) 211, 259, 394
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 2 cut(s) 92, 260
HpaII CCGG 1 cut(s) 130
HphI GGTGA 2 cut(s) 71, 138
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 33, 306
Hpy188III TCNNGA 3 cut(s) 49, 326, 400
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 38, 73
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 4, 21, 227, 382
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 177, 299, 308, 347
HpyF3I CTNAG 3 cut(s) 32, 294, 360
Hsp92II CATG 3 cut(s) 211, 259, 394
HspAI GCGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 1 cut(s) 210
LpnPI CCDG 4 cut(s) 143, 167, 203, 372
LweI GCATC 3 cut(s) 13, 54, 93
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 2 cut(s) 254, 350
MluCI AATT 2 cut(s) 23, 121
MluNI TGGCCA 2 cut(s) 254, 350
MlyI GAGTC 2 cut(s) 86, 269
Mox20I TGGCCA 2 cut(s) 254, 350
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 2 cut(s) 254, 350
Msp20I TGGCCA 2 cut(s) 254, 350
MspI CCGG 1 cut(s) 130
Mva1269I GAATGC 1 cut(s) 313
MwoI GCNNNNNNNGC 5 cut(s) 18, 177, 299, 308, 347
NcoI CCATGG 2 cut(s) 255, 390
NdeII GATC 1 cut(s) 210
NlaIII CATG 3 cut(s) 211, 259, 394
NlaIV GGNNCC 1 cut(s) 134
NmeAIII GCCGAG 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 6
PctI GAATGC 1 cut(s) 313
PkrI GCNGC 3 cut(s) 170, 340, 376
PleI GAGTC 2 cut(s) 86, 268
PpsI GAGTC 2 cut(s) 86, 268
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 3 cut(s) 132, 387, 394
SatI GCNGC 3 cut(s) 169, 339, 375
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 3 cut(s) 132, 387, 394
SchI GAGTC 2 cut(s) 86, 269
SduI GDGCHC 1 cut(s) 304
SetI ASST 5 cut(s) 57, 101, 166, 389, 435
SfaNI GCATC 3 cut(s) 13, 54, 93
SinI GGWCC 2 cut(s) 132, 387
SmlI CTYRAG 2 cut(s) 218, 398
SmoI CTYRAG 2 cut(s) 218, 398
Sse9I AATT 2 cut(s) 23, 121
SsiI CCGC 4 cut(s) 82, 169, 338, 375
StyI CCWWGG 2 cut(s) 255, 390
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 5 cut(s) 14, 50, 186, 282, 426
TasI AATT 2 cut(s) 23, 121
TauI GCSGC 3 cut(s) 171, 341, 377
TscAI CASTG 1 cut(s) 384
TspDTI ATGAA 3 cut(s) 148, 300, 333
TspRI CASTG 1 cut(s) 384
VpaK11BI GGWCC 2 cut(s) 132, 387
XapI RAATTY 2 cut(s) 23, 121
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.