Rw6G016890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011980
Physical Location & Seq
Forward (+)
33307253 .. 33308194
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G016890.1

Sequence Viewer

Length: 453 bp
ATGCATCGACGATCGATTTGCAAATTGCTTCTGAGGCATCAAGGCTTCTCCAAGCTCTCTACCCTCAACTTCTCGACTCAGCGCGTTTTGCAGTCCACTCCATTTCCAAAACCCACCACAAGTTTCCACCCTACTCTCTCAAACTCACCGACCCAGTTCATTACTCGCCGCCAATTCAGCGGTTCAGGTGATTTCGATCAGAATAAAGAGGTGGACATGATCAATCTCAAGTTTGCAGAGGCAAGGGAGGAGATAGAGATGGCCATGGAGTCCAAAGAGACCGTCTATTTTGATGAAGAGGCTGCTTGTGCTCGGACTGCTGTCAATGAAGTTCTCGATGGCTATGAAGCTTTGCTGGCGAAGTTGACGGAAGACAAAAGGGCTGCACTGCAGAGGTCTATGGGCCTCAAGATTGAGCAGTTGAAGGCTGAAATCGAACAGCTGAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.15

Weight (kDa)

5.98

Isoelectric Point (pI)

63.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011980)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71730
fragaria_vesca FvH4_2g12890 FvH4_2g12890
malus_domestica MD05G1035400.v1.1 MD10G1037700.v1.1
prunus_persica Prupe.8G043100_v2.0.a1 Prupe.8G043100_v2.0.a1
pyrus_communis pycom10g02560
rosa_chinensis RchiOBHm_Chr6g0273991
rosa_laevigata RLG00000013586
rosa_multiflora Rmu_sc0000045.1_g000087 Rmu_sc0002247.1_g000021
rosa_roxburghii Rroxscaffold_7G00194810
rosa_rugosa Rorug06G0078100
rosa_samantha Rh6AG193700 Rh6BG197300 Rh6CG197200 Rh6DG189100
rosa_wichuraiana Rw6G016890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AciI CCGC 2 cut(s) 169, 180
AcoI YGGCCR 1 cut(s) 261
AgsI TTSAA 1 cut(s) 424
AluBI AGCT 3 cut(s) 55, 350, 442
AluI AGCT 3 cut(s) 55, 350, 442
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 2 cut(s) 261, 403
ApeKI GCWGC 2 cut(s) 302, 383
ArsI GACNNNNNNTTYG 3 cut(s) 32, 267, 299
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 138, 200
BalI TGGCCA 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 289, 370
BccI CCATC 2 cut(s) 253, 332
BcgI CGANNNNNNTGC 1 cut(s) 34
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 389
BisI GCNGC 3 cut(s) 169, 303, 384
BlsI GCNGC 3 cut(s) 170, 304, 385
BmgT120I GGNCC 1 cut(s) 403
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 2 cut(s) 13, 46
BmuI ACTGGG 1 cut(s) 148
BoxI GACNNNNGTC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 378
BpuEI CTTGAG 2 cut(s) 212, 392
Bsa29I ATCGAT 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 154
Bse8I GATNNNNATC 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 2 cut(s) 23, 92
BseNI ACTGG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 289, 370
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 263, 405
BshVI ATCGAT 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 263, 405
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 11, 196, 219
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 2 cut(s) 169, 180
BspANI GGCC 2 cut(s) 263, 405
BspCNI CTCAG 2 cut(s) 24, 91
BspDI ATCGAT 1 cut(s) 14
BspFNI CGCG 1 cut(s) 84
BspMAI CTGCAG 1 cut(s) 393
BspTNI GGTCTC 1 cut(s) 272
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 11, 196, 219
BssT1I CCWWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 32, 78
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 3 cut(s) 14, 199, 222
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 3 cut(s) 11, 196, 219
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 6 cut(s) 34, 88, 177, 308, 317, 356
BstPAI GACNNNNGTC 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 389
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 289, 370
BstV2I GAAGAC 1 cut(s) 378
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 2 cut(s) 263, 405
BsuTUI ATCGAT 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 403
ClaI ATCGAT 1 cut(s) 14
CviAII CATG 2 cut(s) 217, 265
DdeI CTNAG 2 cut(s) 32, 78
DpnI GATC 3 cut(s) 13, 198, 221
DpnII GATC 3 cut(s) 11, 196, 219
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 220, 268
FaiI YATR 4 cut(s) 218, 266, 345, 401
FatI CATG 2 cut(s) 216, 264
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 169, 303, 384
Fsp4HI GCNGC 3 cut(s) 169, 303, 384
GlaI GCGC 1 cut(s) 83
GluI GCNGC 3 cut(s) 169, 303, 384
HaeIII GGCC 2 cut(s) 263, 405
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 220, 268
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 2 cut(s) 76, 269
HphI GGTGA 2 cut(s) 138, 200
Hpy166II GTNNAC 3 cut(s) 96, 214, 366
Hpy188I TCNGA 3 cut(s) 33, 201, 315
Hpy188III TCNNGA 3 cut(s) 73, 335, 409
Hpy8I GTNNAC 3 cut(s) 96, 214, 366
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 6 cut(s) 4, 21, 91, 236, 386, 391
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 88, 177, 308, 317, 356
HpyF3I CTNAG 2 cut(s) 32, 78
Hsp92II CATG 2 cut(s) 220, 268
HspAI GCGC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 3 cut(s) 11, 196, 219
LpnPI CCDG 3 cut(s) 167, 171, 341
Lsp1109I GCAGC 2 cut(s) 289, 370
LweI GCATC 2 cut(s) 13, 46
MalI GATC 3 cut(s) 13, 198, 221
MboI GATC 3 cut(s) 11, 196, 219
MboII GAAGA 2 cut(s) 308, 383
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 2 cut(s) 23, 173
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 70, 278
MnlI CCTC 8 cut(s) 27, 74, 202, 232, 241, 292, 387, 416
Mox20I TGGCCA 1 cut(s) 263
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 2 cut(s) 180, 442
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 6 cut(s) 34, 88, 177, 308, 317, 356
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 11, 196, 219
NlaIII CATG 2 cut(s) 220, 268
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 3 cut(s) 170, 304, 385
Ple19I CGATCG 1 cut(s) 14
PleI GAGTC 2 cut(s) 70, 277
PpsI GAGTC 2 cut(s) 70, 277
PshAI GACNNNNGTC 1 cut(s) 320
PspPI GGNCC 1 cut(s) 403
PstI CTGCAG 1 cut(s) 393
PvuI CGATCG 1 cut(s) 14
PvuII CAGCTG 1 cut(s) 442
SatI GCNGC 3 cut(s) 169, 303, 384
Sau3AI GATC 3 cut(s) 11, 196, 219
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 2 cut(s) 70, 278
SduI GDGCHC 1 cut(s) 313
SetI ASST 6 cut(s) 57, 190, 213, 352, 398, 444
SfaNI GCATC 2 cut(s) 13, 46
SfcI CTRYAG 1 cut(s) 389
SmlI CTYRAG 2 cut(s) 227, 407
SmoI CTYRAG 2 cut(s) 227, 407
Sse9I AATT 2 cut(s) 23, 173
SsiI CCGC 2 cut(s) 169, 180
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 6 cut(s) 7, 14, 74, 195, 336, 435
TasI AATT 2 cut(s) 23, 173
TauI GCSGC 1 cut(s) 171
TscAI CASTG 1 cut(s) 393
TseI GCWGC 2 cut(s) 302, 383
TspDTI ATGAA 4 cut(s) 148, 309, 342, 360
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.