AT1G71750

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013301
Physical Location & Seq
Reverse (-)
26987775 .. 26989199
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71750.2

Sequence Viewer

Length: 567 bp
ATGGCGTTAGAGAAGCACATAGAGAAGGTACTCTTCAGCGATGAAGTAATTGCGCACCGGGTGAATCAGCTTGGAATCGATATTACTTCTGATTTCTCCGGTGACTCGGAGGAAACTCCTATTTTTGTCGGCGTAGCCACTGGTGCTTGCCTCTTCTTGGCCGATCTCGTTAGGCGAATTGACTTGCCAATAGCTATAGATTTCATTAGAGCTGAGTCTTACGGCTCTGGTACTGTATCCAGTGGAGTTCCCAGAGTATCATTTGACTTAAAGCTTGACATCACGAACAAGCACGTTGTCTTGGTCGAGGACATTGTGGATACTGGCAATACACTTAGCTGCCTGATTGAGCACATGAAAGCAAAAAAGGCGTCATCTGTTTCGGTTTGCACTCTCCTCGACAAGCCATCGAGAAGAAAGGTTCATTATAAGCTGGTTGGAAAGGGGAAATTCTACAGTGGTTTTGAATGTCCAGATGAATTTGTCGTGGGCTATGGCATGGATTTTGCAGAACAATACCGCAACCTATCTTACATTGGCGTATTGAAGCCTGAATATTACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

188

Amino Acids

20.88

Weight (kDa)

5.54

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran PF00156 27 - 146 4.5e-25 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
Acc16I TGCGCA 1 cut(s) 54
AciI CCGC 1 cut(s) 520
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 2 cut(s) 449, 479
AcuI CTGAAG 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 371
AdeI CACNNNGTG 1 cut(s) 61
AfaI GTAC 2 cut(s) 30, 232
AfiI CCNNNNNNNGG 1 cut(s) 157
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 2 cut(s) 467, 547
AluBI AGCT 6 cut(s) 70, 194, 212, 274, 339, 433
AluI AGCT 6 cut(s) 70, 194, 212, 274, 339, 433
Alw21I GWGCWC 1 cut(s) 354
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 339
ApoI RAATTY 2 cut(s) 449, 479
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 73, 113
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciVI GTATCC 2 cut(s) 247, 313
BcnI CCSGG 1 cut(s) 59
BfmI CTRYAG 2 cut(s) 195, 454
BfuI GTATCC 2 cut(s) 247, 313
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 145, 240, 328
BseCI ATCGAT 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 145, 240, 328
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 2 cut(s) 58, 99
BslI CCNNNNNNNGG 1 cut(s) 157
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 520
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 1 cut(s) 78
BsrI ACTGG 3 cut(s) 145, 240, 328
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 235, 458
Bst6I CTCTTC 2 cut(s) 38, 158
BstACI GRCGYC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 213, 335
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 143, 368
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 2 cut(s) 195, 454
BstV1I GCAGC 1 cut(s) 326
Bsu15I ATCGAT 1 cut(s) 78
BsuI GTATCC 2 cut(s) 247, 313
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 54
BtsIMutI CAGTG 3 cut(s) 138, 247, 463
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 78
CseI GACGC 1 cut(s) 360
Csp6I GTAC 2 cut(s) 29, 231
CviAII CATG 3 cut(s) 355, 499, 562
CviQI GTAC 2 cut(s) 29, 231
DdeI CTNAG 2 cut(s) 213, 335
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraIII CACNNNGTG 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 38, 158
EarI CTCTTC 2 cut(s) 38, 158
Eco57I CTGAAG 1 cut(s) 19
FaeI CATG 3 cut(s) 358, 502, 565
FaiI YATR 7 cut(s) 20, 197, 356, 429, 495, 500, 563
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 3 cut(s) 354, 498, 561
Fnu4HI GCNGC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 340
FspI TGCGCA 1 cut(s) 54
GlaI GCGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 1 cut(s) 161
HapII CCGG 2 cut(s) 58, 99
HgaI GACGC 1 cut(s) 360
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 3 cut(s) 358, 502, 565
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 4 cut(s) 64, 75, 104, 215
HpaII CCGG 2 cut(s) 58, 99
HphI GGTGA 2 cut(s) 73, 113
Hpy188I TCNGA 2 cut(s) 91, 109
Hpy188III TCNNGA 3 cut(s) 283, 411, 473
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 235, 458
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 390, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 368
HpyF3I CTNAG 2 cut(s) 213, 335
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 3 cut(s) 358, 502, 565
HspAI GCGC 1 cut(s) 53
Kzo9I GATC 1 cut(s) 163
Lsp1109I GCAGC 1 cut(s) 326
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 25, 145, 426
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 4 cut(s) 48, 177, 449, 479
MlyI GAGTC 2 cut(s) 98, 224
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 4 cut(s) 103, 161, 301, 407
MseI TTAA 1 cut(s) 269
MspI CCGG 2 cut(s) 58, 99
MspR9I CCNGG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 143, 368
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 163
NlaIII CATG 3 cut(s) 358, 502, 565
NmuCI GTSAC 1 cut(s) 101
NsbI TGCGCA 1 cut(s) 54
NspI RCATGY 1 cut(s) 565
PciI ACATGT 1 cut(s) 561
PfeI GAWTC 2 cut(s) 64, 75
PkrI GCNGC 1 cut(s) 341
PleI GAGTC 2 cut(s) 98, 223
PpsI GAGTC 2 cut(s) 98, 223
PscI ACATGT 1 cut(s) 561
PsiI TTATAA 1 cut(s) 429
RsaI GTAC 2 cut(s) 30, 232
RsaNI GTAC 2 cut(s) 29, 231
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 2 cut(s) 98, 224
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 354
SfcI CTRYAG 2 cut(s) 195, 454
Sse9I AATT 4 cut(s) 48, 177, 449, 479
SsiI CCGC 1 cut(s) 520
SspI AATATT 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 235, 458
TaiI ACGT 1 cut(s) 297
TaqI TCGA 4 cut(s) 78, 306, 399, 410
TasI AATT 4 cut(s) 48, 177, 449, 479
TfiI GAWTC 2 cut(s) 64, 75
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 3 cut(s) 145, 247, 463
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 339
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 5 cut(s) 57, 193, 371, 413, 492
TspRI CASTG 3 cut(s) 145, 247, 463
XapI RAATTY 2 cut(s) 449, 479
XceI RCATGY 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.