Rh6DG188400

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013301
Physical Location & Seq
Forward (+)
33578858 .. 33599864
21007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG188400.1

Sequence Viewer

Length: 438 bp
ATGGGCGACACCTTGGGTGACTCAAAGCAACACAGCCCTGTAGGGCTCTCCAAAATGTACAGTACAAACCTGCATGGTGGAGCATTGGTAGTATTGAACGGCATAGAAGATGGTGGACATGTTCTTCCGGTCTCTCGGTGCTCGCTTGTCGCCGCGAGATTTGTTGAGGACATTGTGGATAGCGGGAGCACTCTGTCGTGTCTGATTGCGCACTTGGAATCGAAAGGGGCTTCGTCTGTGTCAGTGTCTACTTTTCTTGATAAACCATCGAGAAGAAAAGTTCACTTTAAGCTTCTAGGCAAGGGAAAGTTCTACCGAGGTTTCGAGTGTCCAGATTCTTTTGTTGTGGGTTACGGAATGGACTTTGCTGAACTGTACAGGAACTTGCCTTATGTTGGTGTTCTGAAGCCGGAGCATTACAAGTGCCAGTCACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

145

Amino Acids

15.71

Weight (kDa)

8.34

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran PF00156 55 - 122 4.8e-08 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 78
AccI GTMKAC 1 cut(s) 248
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 153, 183
AcuI CTGAAG 1 cut(s) 425
AfaI GTAC 3 cut(s) 59, 64, 377
AfiI CCNNNNNNNGG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw21I GWGCWC 2 cut(s) 143, 191
Alw26I GTCTC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 2 cut(s) 29, 423
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 2 cut(s) 143, 191
BccI CCATC 2 cut(s) 104, 274
BceAI ACGGC 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 12, 316
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 12, 316
BseLI CCNNNNNNNGG 1 cut(s) 395
BseNI ACTGG 1 cut(s) 427
Bsh1236I CGCG 1 cut(s) 155
BsiHKAI GWGCWC 2 cut(s) 143, 191
BsiSI CCGG 2 cut(s) 128, 410
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 136
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 48, 143, 191
Bsp1407I TGTACA 2 cut(s) 57, 375
BspACI CCGC 2 cut(s) 153, 183
BspFNI CGCG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 136
BsrGI TGTACA 2 cut(s) 57, 375
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 12, 316
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 62, 375
BstAUI TGTACA 2 cut(s) 57, 375
BstC8I GCNNGC 1 cut(s) 143
BstFNI CGCG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 39
BstUI CGCG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 3 cut(s) 58, 63, 376
CviAII CATG 2 cut(s) 74, 119
CviJI RGCY 5 cut(s) 36, 46, 230, 292, 409
CviKI_1 RGCY 5 cut(s) 36, 46, 230, 292, 409
CviQI GTAC 3 cut(s) 58, 63, 376
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 2 cut(s) 77, 122
FaiI YATR 4 cut(s) 75, 104, 120, 393
FatI CATG 2 cut(s) 73, 118
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 296
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 153
HapII CCGG 2 cut(s) 128, 410
HhaI GCGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 77, 122
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 20, 218, 335
HpaII CCGG 2 cut(s) 128, 410
HphI GGTGA 2 cut(s) 29, 423
Hpy166II GTNNAC 3 cut(s) 116, 249, 283
Hpy188I TCNGA 2 cut(s) 204, 405
Hpy188III TCNNGA 3 cut(s) 257, 270, 332
Hpy8I GTNNAC 3 cut(s) 116, 249, 283
HpyCH4III ACNGT 2 cut(s) 62, 375
HpyCH4V TGCA 1 cut(s) 73
Hsp92II CATG 2 cut(s) 77, 122
HspAI GCGC 1 cut(s) 209
LmnI GCTCC 3 cut(s) 80, 186, 412
LpnPI CCDG 6 cut(s) 51, 83, 141, 345, 364, 423
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 3 cut(s) 17, 350, 429
MboII GAAGA 3 cut(s) 116, 119, 285
MhlI GDGCHC 3 cut(s) 48, 143, 191
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 160, 311
MseI TTAA 1 cut(s) 288
MspI CCGG 2 cut(s) 128, 410
MvnI CGCG 1 cut(s) 155
NlaIII CATG 2 cut(s) 77, 122
NmuCI GTSAC 2 cut(s) 17, 429
NsbI TGCGCA 1 cut(s) 210
NspI RCATGY 1 cut(s) 122
PciI ACATGT 1 cut(s) 118
PfeI GAWTC 2 cut(s) 218, 335
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PscI ACATGT 1 cut(s) 118
RsaI GTAC 3 cut(s) 59, 64, 377
RsaNI GTAC 3 cut(s) 58, 63, 376
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 1 cut(s) 153
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 3 cut(s) 48, 143, 191
SetI ASST 4 cut(s) 14, 72, 294, 322
SfcI CTRYAG 1 cut(s) 39
SsiI CCGC 2 cut(s) 153, 183
SspMI CTAG 1 cut(s) 296
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 62, 375
TaqI TCGA 3 cut(s) 221, 269, 324
TatI WGTACW 3 cut(s) 57, 62, 375
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 218, 335
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 2 cut(s) 17, 429
Tsp45I GTSAC 2 cut(s) 17, 429
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 249
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.