Prupe.8G043500_v2.0.a1

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013301
Physical Location & Seq
Reverse (-)
4495491 .. 4498474
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G043500.1

Sequence Viewer

Length: 564 bp
ATGTCCTTGGACTCTCACATAGAGAGTGTTCTGTGGACCCCGGACCAAATCGCCGCCCGAGTCTCCGAGCTCGCCGCCCAGATCTCCGCCGACCACTCCCCTCTCTCCGAGCCCCTCGTCCTCGTCGGCGTCGCCACCGGTGCTTTTCTCTTCCTCGCCGACTTGGCCAGGAGCCTCCGCCTCCCCGTCACCGTCGATTTTATCCGCGCCGAATCCTACGGCTCCGGGACTGTCTCCAATGGGTCCCCCAGGATTTCCTCCGACTTGAAGCTTGACGTATCCGGCCGCCACGTGGTCCTGGTTGAGGACATCGTGGATTCGGGAAGCACAATTGCCTGCTTGATTGCACACTTGGAAGCAAAAGGTGCTTCCTCTGTGTCAGTCTGCGCTTTCCTTGATAAACCATCTAGACGAAAGGTTCATTTTCAGCTCCTTAGCAAGGGAAAATTCTACCGAGGTTTCGAGTGTCCAGATTACTTTGTTGTGGGCTATGGAATGGACTTTGCTGAACTTTACAGGAACTTGCCTTATGTTGGTGTTTTGAAGCCTGAGCATTATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

188

Amino Acids

20.36

Weight (kDa)

6.05

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AccII CGCG 1 cut(s) 207
AciI CCGC 6 cut(s) 54, 75, 87, 178, 205, 286
AcoI YGGCCR 2 cut(s) 165, 283
AcsI RAATTY 1 cut(s) 446
AcvI CACGTG 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 4 cut(s) 292, 304, 439, 533
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 2 cut(s) 268, 544
AjnI CCWGG 3 cut(s) 167, 248, 297
AluBI AGCT 3 cut(s) 70, 271, 430
AluI AGCT 3 cut(s) 70, 271, 430
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 2 cut(s) 67, 238
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 2 cut(s) 165, 283
ApoI RAATTY 1 cut(s) 446
AsiGI ACCGGT 1 cut(s) 137
AspLEI GCGC 2 cut(s) 209, 389
AspS9I GGNCC 4 cut(s) 36, 43, 243, 295
AsuC2I CCSGG 2 cut(s) 41, 226
AsuHPI GGTGA 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 4 cut(s) 36, 43, 243, 295
BalI TGGCCA 1 cut(s) 167
BanII GRGCYC 2 cut(s) 72, 114
BbrPI CACGTG 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 3 cut(s) 169, 250, 299
BciVI GTATCC 1 cut(s) 289
BcnI CCSGG 2 cut(s) 41, 226
BcoDI GTCTC 2 cut(s) 67, 238
BfaI CTAG 1 cut(s) 408
BfuI GTATCC 1 cut(s) 289
BglI GCCNNNNNGGC 1 cut(s) 164
BglII AGATCT 1 cut(s) 81
BisI GCNGC 3 cut(s) 54, 75, 286
BlsI GCNGC 3 cut(s) 55, 76, 287
Bme1390I CCNGG 5 cut(s) 41, 169, 226, 250, 299
Bme18I GGWCC 4 cut(s) 36, 43, 243, 295
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 4 cut(s) 36, 43, 243, 295
BmiI GGNNCC 5 cut(s) 38, 173, 223, 244, 245
BmrFI CCNGG 5 cut(s) 41, 169, 226, 250, 299
Bpu10I CCTNAGC 2 cut(s) 434, 549
BpuMI CCSGG 2 cut(s) 41, 226
BsaAI YACGTR 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 6, 39, 248, 454
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 4 cut(s) 292, 304, 439, 533
Bse118I RCCGGY 1 cut(s) 137
BseBI CCWGG 3 cut(s) 169, 250, 299
BseDI CCNNGG 4 cut(s) 6, 39, 248, 454
BseLI CCNNNNNNNGG 4 cut(s) 292, 304, 439, 533
BseMII CTCAG 1 cut(s) 540
BseX3I CGGCCG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 167, 285
BshTI ACCGGT 1 cut(s) 137
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 4 cut(s) 41, 138, 225, 282
BslFI GGGAC 2 cut(s) 229, 241
BslI CCNNNNNNNGG 4 cut(s) 292, 304, 439, 533
BsmAI GTCTC 2 cut(s) 67, 238
BsmFI GGGAC 2 cut(s) 229, 241
BsnI GGCC 2 cut(s) 167, 285
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 72, 114
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 6 cut(s) 54, 75, 87, 178, 205, 286
BspANI GGCC 2 cut(s) 167, 285
BspCNI CTCAG 1 cut(s) 541
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 5 cut(s) 38, 173, 223, 244, 245
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 4 cut(s) 6, 39, 248, 454
BssMI GATC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 3 cut(s) 169, 250, 299
Bst4CI ACNGT 2 cut(s) 193, 232
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 365
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 72, 337
BstDEI CTNAG 2 cut(s) 434, 549
BstENI CCTNNNNNAGG 2 cut(s) 302, 437
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 209, 389
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 2 cut(s) 67, 238
BstMBI GATC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 3 cut(s) 140, 164, 365
BstNI CCWGG 3 cut(s) 169, 250, 299
BstSCI CCNGG 5 cut(s) 39, 167, 224, 248, 297
BstUI CGCG 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BstZI CGGCCG 1 cut(s) 283
BsuI GTATCC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 167, 285
Cac8I GCNNGC 2 cut(s) 72, 337
CfoI GCGC 2 cut(s) 209, 389
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 36, 43, 243, 295
CseI GACGC 1 cut(s) 118
CspAI ACCGGT 1 cut(s) 137
DdeI CTNAG 2 cut(s) 434, 549
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 165, 283
EagI CGGCCG 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 2 cut(s) 76, 167
Ecl136II GAGCTC 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 72, 114
Eco47I GGWCC 4 cut(s) 36, 43, 243, 295
Eco52I CGGCCG 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 70
Eco72I CACGTG 1 cut(s) 292
Eco88I CYCGRG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 70
EcoNI CCTNNNNNAGG 2 cut(s) 302, 437
EcoO109I RGGNCCY 1 cut(s) 243
EcoRII CCWGG 3 cut(s) 167, 248, 297
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 72, 114
ErhI CCWWGG 1 cut(s) 6
FaiI YATR 4 cut(s) 20, 492, 531, 558
FaqI GGGAC 2 cut(s) 229, 241
Fnu4HI GCNGC 3 cut(s) 54, 75, 286
FriOI GRGCYC 2 cut(s) 72, 114
Fsp4HI GCNGC 3 cut(s) 54, 75, 286
FspBI CTAG 1 cut(s) 408
GlaI GCGC 2 cut(s) 208, 388
GluI GCNGC 3 cut(s) 54, 75, 286
HaeIII GGCC 2 cut(s) 167, 285
HapII CCGG 4 cut(s) 41, 138, 225, 282
HgaI GACGC 1 cut(s) 118
HhaI GCGC 2 cut(s) 209, 389
Hin1I GRCGYC 1 cut(s) 129
Hin6I GCGC 2 cut(s) 207, 387
HinP1I GCGC 2 cut(s) 207, 387
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 4 cut(s) 11, 60, 212, 317
HpaII CCGG 4 cut(s) 41, 138, 225, 282
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 67, 109, 262
Hpy188III TCNNGA 3 cut(s) 321, 408, 470
Hpy8I GTNNAC 1 cut(s) 36
Hpy99I CGWCG 3 cut(s) 128, 134, 197
HpyCH4III ACNGT 2 cut(s) 193, 232
HpyCH4IV ACGT 2 cut(s) 276, 291
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 164, 365
HpyF3I CTNAG 2 cut(s) 434, 549
HpySE526I ACGT 2 cut(s) 276, 291
Hsp92I GRCGYC 1 cut(s) 129
HspAI GCGC 2 cut(s) 207, 387
KflI GGGWCCC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 3 cut(s) 171, 227, 435
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 276, 291
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 72, 114
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 330, 446
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 5, 69
MmeI TCCRAC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 4 cut(s) 41, 138, 225, 282
MspR9I CCNGG 5 cut(s) 41, 169, 226, 250, 299
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 3 cut(s) 169, 250, 299
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 140, 164, 365
NciI CCSGG 2 cut(s) 41, 226
NdeII GATC 1 cut(s) 81
NlaIV GGNNCC 5 cut(s) 38, 173, 223, 244, 245
NmuCI GTSAC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 212, 317
PfoI TCCNGGA 1 cut(s) 224
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 3 cut(s) 55, 76, 287
PleI GAGTC 2 cut(s) 5, 68
PmaCI CACGTG 1 cut(s) 292
PmlI CACGTG 1 cut(s) 292
PpsI GAGTC 2 cut(s) 5, 68
Ppu21I YACGTR 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 243
PsiI TTATAA 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 3 cut(s) 167, 248, 297
PspCI CACGTG 1 cut(s) 292
PspGI CCWGG 3 cut(s) 167, 248, 297
PspN4I GGNNCC 5 cut(s) 38, 173, 223, 244, 245
PspPI GGNCC 4 cut(s) 36, 43, 243, 295
PspPPI RGGWCCY 1 cut(s) 243
PsuI RGATCY 1 cut(s) 81
SacI GAGCTC 1 cut(s) 72
SatI GCNGC 3 cut(s) 54, 75, 286
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 4 cut(s) 36, 43, 243, 295
SchI GAGTC 2 cut(s) 5, 69
ScrFI CCNGG 5 cut(s) 41, 169, 226, 250, 299
SduI GDGCHC 2 cut(s) 72, 114
SetI ASST 8 cut(s) 72, 273, 279, 294, 367, 420, 432, 460
SgrAI CRCCGGYG 1 cut(s) 137
SinI GGWCC 4 cut(s) 36, 43, 243, 295
Sse9I AATT 2 cut(s) 330, 446
SsiI CCGC 6 cut(s) 54, 75, 87, 178, 205, 286
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 5 cut(s) 39, 167, 224, 248, 297
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 193, 232
TaiI ACGT 2 cut(s) 279, 294
TaqI TCGA 2 cut(s) 195, 462
TasI AATT 2 cut(s) 330, 446
TauI GCSGC 3 cut(s) 56, 77, 288
TfiI GAWTC 2 cut(s) 212, 317
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 410
VpaK11BI GGWCC 4 cut(s) 36, 43, 243, 295
XagI CCTNNNNNAGG 2 cut(s) 302, 437
XapI RAATTY 1 cut(s) 446
XbaI TCTAGA 1 cut(s) 407
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.