MD05G1035600.v1.1

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013301
Physical Location & Seq
Reverse (-)
5734606 .. 5736416
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1035600.v1.1.491

Sequence Viewer

Length: 570 bp
ATGTCCTTGGACTCTCACATAGAGAGGGTCCTCTGGACTCCGGACCAAATCGCCACCCGTGTCTTCGACCTCGCCGCCCAGATCTCCGCCGATCTCTCCCCCTTCTCCGAACCCCCTGCCCCTGCCCTCGTAGGCGTCGCCACCGGCGCCTTTCTCTTCCTCGCCGACTTGGCCCGCCAAATCCCCCTCCCCGTCACCGTCGACTTCATCCGCGCCGAATCCTACGGCTCCGGGACCCAGTCCAATGGCTTCCCCACGATCTCCTTCGACTTGAAGCTCGACGTCACCGGCCGCCACGTCGTCCTGGTTGAGGACATTGTGGATACGGGGACTACAATCGCGCATCTGATTGCGCACATGGAATCGAAAGGTGCTTCGTCTGTGTCGGTCTGCACATTTCTGGATAAACCATCGAGACGGAAGGTTGATTTTCAGCTTCTCAGCAAGGGAAAATTCTACCGCGGTTTCGAGTGTCCAGATTACTTTGTTGTGGGCTATGGAATGGACTTTGCTGAACGTTACAGGAACTTACCATACATAGGTGTTTTGAAGCCGGAGCTGTATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

190

Amino Acids

20.87

Weight (kDa)

5.53

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran PF00156 17 - 170 1.8e-26 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
Acc16I TGCGCA 1 cut(s) 354
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 201
AccII CGCG 3 cut(s) 213, 341, 462
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 7 cut(s) 75, 87, 175, 211, 292, 460, 462
AclI AACGTT 1 cut(s) 517
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 3 cut(s) 135, 147, 282
AfiI CCNNNNNNNGG 2 cut(s) 310, 539
AgsI TTSAA 2 cut(s) 274, 550
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 277, 436, 559
AluI AGCT 3 cut(s) 277, 436, 559
Alw26I GTCTC 1 cut(s) 409
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 2 cut(s) 171, 289
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 4 cut(s) 149, 215, 343, 355
AspS9I GGNCC 4 cut(s) 28, 43, 172, 234
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 187, 277
AvaII GGWCC 3 cut(s) 28, 43, 234
BanI GGYRCC 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 55
BccI CCATC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 305
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 409
BfoI RGCGCY 1 cut(s) 150
BfuI GTATCC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 170
BglII AGATCT 1 cut(s) 81
BisI GCNGC 2 cut(s) 75, 292
BlsI GCNGC 2 cut(s) 76, 293
Bme1390I CCNGG 2 cut(s) 232, 305
Bme18I GGWCC 3 cut(s) 28, 43, 234
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 28, 43, 172, 234
BmiI GGNNCC 5 cut(s) 29, 148, 229, 235, 236
BmrFI CCNGG 2 cut(s) 232, 305
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 232
BsaHI GRCGYC 3 cut(s) 135, 147, 282
BsaJI CCNNGG 2 cut(s) 6, 460
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 539
Bse118I RCCGGY 2 cut(s) 143, 287
Bse1I ACTGG 1 cut(s) 238
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 2 cut(s) 6, 460
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 310, 539
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 376
Bsh1236I CGCG 3 cut(s) 213, 341, 462
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 2 cut(s) 173, 291
BshNI GGYRCC 1 cut(s) 146
BsiEI CGRYCG 1 cut(s) 292
BsiSI CCGG 5 cut(s) 41, 144, 231, 288, 554
BslFI GGGAC 2 cut(s) 247, 343
BslI CCNNNNNNNGG 2 cut(s) 310, 539
BsmAI GTCTC 1 cut(s) 409
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 2 cut(s) 247, 343
BsnI GGCC 2 cut(s) 173, 291
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 3 cut(s) 81, 91, 258
BspACI CCGC 7 cut(s) 75, 87, 175, 211, 292, 460, 462
BspANI GGCC 2 cut(s) 173, 291
BspCNI CTCAG 1 cut(s) 453
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 3 cut(s) 213, 341, 462
BspLI GGNNCC 5 cut(s) 29, 148, 229, 235, 236
BspT107I GGYRCC 1 cut(s) 146
BsrFI RCCGGY 2 cut(s) 143, 287
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 2 cut(s) 143, 287
BssECI CCNNGG 2 cut(s) 6, 460
BssMI GATC 3 cut(s) 81, 91, 258
BssNI GRCGYC 3 cut(s) 135, 147, 282
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 3 cut(s) 135, 147, 282
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 440
BstDSI CCRYGG 1 cut(s) 460
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 3 cut(s) 213, 341, 462
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 4 cut(s) 149, 215, 343, 355
BstKTI GATC 3 cut(s) 84, 94, 261
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 3 cut(s) 81, 91, 258
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 146, 170
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 230, 303
BstUI CGCG 3 cut(s) 213, 341, 462
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 81
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 1 cut(s) 81
BstZI CGGCCG 1 cut(s) 289
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 173, 291
BtgI CCRYGG 1 cut(s) 460
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 4 cut(s) 149, 215, 343, 355
Cfr10I RCCGGY 2 cut(s) 143, 287
Cfr13I GGNCC 4 cut(s) 28, 43, 172, 234
Cfr42I CCGCGG 1 cut(s) 463
CseI GACGC 1 cut(s) 124
CviAII CATG 1 cut(s) 358
CviJI RGCY 9 cut(s) 173, 228, 249, 277, 291, 436, 495, 553, 559
CviKI_1 RGCY 9 cut(s) 173, 228, 249, 277, 291, 436, 495, 553, 559
DdeI CTNAG 1 cut(s) 440
DinI GGCGCC 1 cut(s) 148
DpnI GATC 3 cut(s) 83, 93, 260
DpnII GATC 3 cut(s) 81, 91, 258
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 3 cut(s) 28, 43, 234
Eco52I CGGCCG 1 cut(s) 289
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 28, 234
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 148
EheI GGCGCC 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 1 cut(s) 361
FaiI YATR 6 cut(s) 20, 359, 498, 535, 539, 564
FaqI GGGAC 2 cut(s) 247, 343
FatI CATG 1 cut(s) 357
FauI CCCGC 1 cut(s) 182
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 75, 292
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 2 cut(s) 75, 292
FspI TGCGCA 1 cut(s) 354
GlaI GCGC 4 cut(s) 148, 214, 342, 354
GluI GCNGC 2 cut(s) 75, 292
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 2 cut(s) 173, 291
HapII CCGG 5 cut(s) 41, 144, 231, 288, 554
HgaI GACGC 1 cut(s) 124
HhaI GCGC 4 cut(s) 149, 215, 343, 355
Hin1I GRCGYC 3 cut(s) 135, 147, 282
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 4 cut(s) 147, 213, 341, 353
HinP1I GCGC 4 cut(s) 147, 213, 341, 353
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 4 cut(s) 11, 37, 218, 362
HpaII CCGG 5 cut(s) 41, 144, 231, 288, 554
HphI GGTGA 2 cut(s) 187, 277
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 109, 348
Hpy188III TCNNGA 5 cut(s) 34, 41, 401, 414, 476
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 4 cut(s) 140, 203, 284, 302
HpyAV CCTTC 3 cut(s) 112, 274, 415
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 3 cut(s) 282, 297, 517
HpyCH4V TGCA 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 170
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 3 cut(s) 282, 297, 517
Hsp92I GRCGYC 3 cut(s) 135, 147, 282
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 4 cut(s) 147, 213, 341, 353
KasI GGCGCC 1 cut(s) 146
KflI GGGWCCC 1 cut(s) 234
Kpn2I TCCGGA 1 cut(s) 40
KspI CCGCGG 1 cut(s) 463
Kzo9I GATC 3 cut(s) 81, 91, 258
LmnI GCTCC 2 cut(s) 233, 556
LweI GCATC 1 cut(s) 352
MaeII ACGT 3 cut(s) 282, 297, 517
MaeIII GTNAC 3 cut(s) 193, 283, 518
MalI GATC 3 cut(s) 83, 93, 260
MboI GATC 3 cut(s) 81, 91, 258
MboII GAAGA 2 cut(s) 55, 148
MflI RGATCY 1 cut(s) 81
MluCI AATT 1 cut(s) 452
Mly113I GGCGCC 1 cut(s) 147
MlyI GAGTC 2 cut(s) 5, 31
MnlI CCTC 7 cut(s) 18, 41, 80, 137, 170, 197, 304
MroI TCCGGA 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 462
MspI CCGG 5 cut(s) 41, 144, 231, 288, 554
MspR9I CCNGG 2 cut(s) 232, 305
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 3 cut(s) 213, 341, 462
MwoI GCNNNNNNNGC 2 cut(s) 146, 170
NarI GGCGCC 1 cut(s) 147
NciI CCSGG 1 cut(s) 232
NdeII GATC 3 cut(s) 81, 91, 258
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 5 cut(s) 29, 148, 229, 235, 236
NmuCI GTSAC 2 cut(s) 193, 283
NsbI TGCGCA 1 cut(s) 354
PfeI GAWTC 2 cut(s) 218, 362
PflFI GACNNNGTC 1 cut(s) 238
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 2 cut(s) 76, 293
PleI GAGTC 2 cut(s) 5, 31
PluTI GGCGCC 1 cut(s) 150
PpsI GAGTC 2 cut(s) 5, 31
PpuMI RGGWCCY 2 cut(s) 28, 234
Psp1406I AACGTT 1 cut(s) 517
Psp5II RGGWCCY 2 cut(s) 28, 234
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 5 cut(s) 29, 148, 229, 235, 236
PspPI GGNCC 4 cut(s) 28, 43, 172, 234
PspPPI RGGWCCY 2 cut(s) 28, 234
PsrI GAACNNNNNNTAC 2 cut(s) 518, 550
PsuI RGATCY 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 238
SacII CCGCGG 1 cut(s) 463
SalI GTCGAC 1 cut(s) 200
SatI GCNGC 2 cut(s) 75, 292
Sau3AI GATC 3 cut(s) 81, 91, 258
Sau96I GGNCC 4 cut(s) 28, 43, 172, 234
SchI GAGTC 2 cut(s) 5, 31
ScrFI CCNGG 2 cut(s) 232, 305
SfaNI GCATC 1 cut(s) 352
SfoI GGCGCC 1 cut(s) 148
Sfr303I CCGCGG 1 cut(s) 463
SgrAI CRCCGGYG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 463
SinI GGWCC 3 cut(s) 28, 43, 234
Sse9I AATT 1 cut(s) 452
SsiI CCGC 7 cut(s) 75, 87, 175, 211, 292, 460, 462
SspDI GGCGCC 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 230, 303
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 3 cut(s) 285, 300, 520
TaqI TCGA 7 cut(s) 66, 201, 267, 279, 365, 413, 468
TaqII GACCGA 1 cut(s) 376
TasI AATT 1 cut(s) 452
TauI GCSGC 2 cut(s) 77, 294
TfiI GAWTC 2 cut(s) 218, 362
TseFI GTSAC 2 cut(s) 193, 283
Tsp45I GTSAC 2 cut(s) 193, 283
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 433
Tth111I GACNNNGTC 1 cut(s) 238
VpaK11BI GGWCC 3 cut(s) 28, 43, 234
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 201
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.