pycom05g02620

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013301
Physical Location & Seq
Reverse (-)
3110995 .. 3112442
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02620.3

Sequence Viewer

Length: 564 bp
ATGTCCTTGGACTCTCACATAGAGAGGGTCCTCTGGACTCCGGACCAAATCGCCACCCGTGTCTTCGACCTCGCCGCCCAGATCTCCGCCGACCTCTCCCCCTTCTCCGAACCCCCTGCCCTCGTAGGCGTCGCCACCGGCGCCTTTCTCTTCCTCGCCGACTTGGCCCGCCAAATCCCCCTCCCCGTCACCGTCGACTTCATCCGCGCCGAATCCTACGGCTCTGGGACCCTGTCCAGTGGCTCCCCCACGATTTCCTTCGACTTGAAGCTCGACGTCACCGGCCGCCACGTCGTCCTGGTTGAGGACATTGTGGATACGGGGACTACAATCGCGCATCTGATTGCGCACATGGAATCGAAAGGTGCTTCGTCTGTGTCGGTGTGCACATTTCTGGATAAACCATCGAGACGGAAGGTTGATTTTCAGCTTCTCAGCAAGGGAAAATTCTACCGCGGTTTCGAGTGTCCAGATTACTTTGTTGTGGGCTATGGAATGGACTTTGCTGAACGTTACAGGAACTTGCCGTACATAGGTGTTTTGAAGCCGGAGCTGTATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

188

Amino Acids

20.6

Weight (kDa)

5.53

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
Acc16I TGCGCA 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 195
AccII CGCG 3 cut(s) 207, 335, 456
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 7 cut(s) 75, 87, 169, 205, 286, 454, 456
AclI AACGTT 1 cut(s) 511
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 446
AcyI GRCGYC 3 cut(s) 129, 141, 276
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 2 cut(s) 304, 533
AgsI TTSAA 2 cut(s) 268, 544
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 3 cut(s) 271, 430, 553
AluI AGCT 3 cut(s) 271, 430, 553
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 403
Alw44I GTGCAC 1 cut(s) 385
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 2 cut(s) 165, 283
ApaLI GTGCAC 1 cut(s) 385
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 4 cut(s) 143, 209, 337, 349
AspS9I GGNCC 4 cut(s) 28, 43, 166, 228
AsuHPI GGTGA 2 cut(s) 181, 271
AvaII GGWCC 3 cut(s) 28, 43, 228
BaeGI GKGCMC 1 cut(s) 389
BanI GGYRCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 389
BccI CCATC 1 cut(s) 412
BceAI ACGGC 2 cut(s) 235, 511
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 1 cut(s) 299
BciVI GTATCC 1 cut(s) 310
BcoDI GTCTC 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 144
BfuI GTATCC 1 cut(s) 310
BglI GCCNNNNNGGC 1 cut(s) 164
BglII AGATCT 1 cut(s) 81
BisI GCNGC 2 cut(s) 75, 286
BlsI GCNGC 2 cut(s) 76, 287
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 3 cut(s) 28, 43, 228
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 4 cut(s) 28, 43, 166, 228
BmiI GGNNCC 5 cut(s) 29, 142, 229, 230, 244
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 55
BsaHI GRCGYC 3 cut(s) 129, 141, 276
BsaJI CCNNGG 2 cut(s) 6, 454
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 533
Bse118I RCCGGY 2 cut(s) 137, 281
Bse1I ACTGG 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 6, 454
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 304, 533
BseMII CTCAG 1 cut(s) 448
BseNI ACTGG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 389
BseX3I CGGCCG 1 cut(s) 283
Bsh1236I CGCG 3 cut(s) 207, 335, 456
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 2 cut(s) 167, 285
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 4 cut(s) 41, 138, 282, 548
BslFI GGGAC 2 cut(s) 241, 337
BslI CCNNNNNNNGG 2 cut(s) 304, 533
BsmAI GTCTC 1 cut(s) 403
BsmBI CGTCTC 1 cut(s) 403
BsmFI GGGAC 2 cut(s) 241, 337
BsnI GGCC 2 cut(s) 167, 285
Bsp1286I GDGCHC 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 7 cut(s) 75, 87, 169, 205, 286, 454, 456
BspANI GGCC 2 cut(s) 167, 285
BspCNI CTCAG 1 cut(s) 447
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 3 cut(s) 207, 335, 456
BspLI GGNNCC 5 cut(s) 29, 142, 229, 230, 244
BspT107I GGYRCC 1 cut(s) 140
BsrFI RCCGGY 2 cut(s) 137, 281
BsrI ACTGG 1 cut(s) 237
BssAI RCCGGY 2 cut(s) 137, 281
BssECI CCNNGG 2 cut(s) 6, 454
BssMI GATC 1 cut(s) 81
BssNI GRCGYC 3 cut(s) 129, 141, 276
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 155
BstACI GRCGYC 3 cut(s) 129, 141, 276
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 434
BstDSI CCRYGG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 3 cut(s) 207, 335, 456
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 4 cut(s) 143, 209, 337, 349
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 403
BstMBI GATC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 2 cut(s) 140, 164
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 389
BstUI CGCG 3 cut(s) 207, 335, 456
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BstZI CGGCCG 1 cut(s) 283
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 167, 285
BtgI CCRYGG 1 cut(s) 454
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 4 cut(s) 143, 209, 337, 349
Cfr10I RCCGGY 2 cut(s) 137, 281
Cfr13I GGNCC 4 cut(s) 28, 43, 166, 228
Cfr42I CCGCGG 1 cut(s) 457
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 529
CviAII CATG 1 cut(s) 352
CviJI RGCY 9 cut(s) 167, 222, 243, 271, 285, 430, 489, 547, 553
CviKI_1 RGCY 9 cut(s) 167, 222, 243, 271, 285, 430, 489, 547, 553
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 1 cut(s) 434
DinI GGCGCC 1 cut(s) 142
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 283
EagI CGGCCG 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 3 cut(s) 28, 43, 228
Eco52I CGGCCG 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 302
EcoO109I RGGNCCY 2 cut(s) 28, 228
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 403
FaeI CATG 1 cut(s) 355
FaiI YATR 5 cut(s) 20, 353, 492, 533, 558
FaqI GGGAC 2 cut(s) 241, 337
FatI CATG 1 cut(s) 351
FauI CCCGC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 75, 286
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 75, 286
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 4 cut(s) 142, 208, 336, 348
GluI GCNGC 2 cut(s) 75, 286
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 2 cut(s) 167, 285
HapII CCGG 4 cut(s) 41, 138, 282, 548
HgaI GACGC 1 cut(s) 118
HhaI GCGC 4 cut(s) 143, 209, 337, 349
Hin1I GRCGYC 3 cut(s) 129, 141, 276
Hin1II CATG 1 cut(s) 355
Hin6I GCGC 4 cut(s) 141, 207, 335, 347
HinP1I GCGC 4 cut(s) 141, 207, 335, 347
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 11, 37, 212, 356
HpaII CCGG 4 cut(s) 41, 138, 282, 548
HphI GGTGA 2 cut(s) 181, 271
Hpy166II GTNNAC 2 cut(s) 196, 387
Hpy188I TCNGA 2 cut(s) 109, 342
Hpy188III TCNNGA 5 cut(s) 34, 41, 395, 408, 470
Hpy8I GTNNAC 2 cut(s) 196, 387
Hpy99I CGWCG 4 cut(s) 134, 197, 278, 296
HpyAV CCTTC 3 cut(s) 112, 268, 409
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 3 cut(s) 276, 291, 511
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 164
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 3 cut(s) 276, 291, 511
Hsp92I GRCGYC 3 cut(s) 129, 141, 276
Hsp92II CATG 1 cut(s) 355
HspAI GCGC 4 cut(s) 141, 207, 335, 347
KasI GGCGCC 1 cut(s) 140
KflI GGGWCCC 1 cut(s) 228
Kpn2I TCCGGA 1 cut(s) 40
KspI CCGCGG 1 cut(s) 457
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 248, 550
LweI GCATC 1 cut(s) 346
MaeII ACGT 3 cut(s) 276, 291, 511
MaeIII GTNAC 3 cut(s) 187, 277, 512
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 2 cut(s) 55, 142
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 1 cut(s) 446
Mly113I GGCGCC 1 cut(s) 141
MlyI GAGTC 2 cut(s) 5, 31
MnlI CCTC 8 cut(s) 18, 41, 80, 104, 131, 164, 191, 298
MroI TCCGGA 1 cut(s) 40
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 4 cut(s) 41, 138, 282, 548
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 3 cut(s) 207, 335, 456
MwoI GCNNNNNNNGC 2 cut(s) 140, 164
NarI GGCGCC 1 cut(s) 141
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 5 cut(s) 29, 142, 229, 230, 244
NmuCI GTSAC 2 cut(s) 187, 277
NsbI TGCGCA 1 cut(s) 348
PfeI GAWTC 2 cut(s) 212, 356
PflFI GACNNNGTC 1 cut(s) 232
PkrI GCNGC 2 cut(s) 76, 287
PleI GAGTC 2 cut(s) 5, 31
PluTI GGCGCC 1 cut(s) 144
PpsI GAGTC 2 cut(s) 5, 31
PpuMI RGGWCCY 2 cut(s) 28, 228
Psp1406I AACGTT 1 cut(s) 511
Psp5II RGGWCCY 2 cut(s) 28, 228
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 5 cut(s) 29, 142, 229, 230, 244
PspPI GGNCC 4 cut(s) 28, 43, 166, 228
PspPPI RGGWCCY 2 cut(s) 28, 228
PsrI GAACNNNNNNTAC 2 cut(s) 512, 544
PsuI RGATCY 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 232
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SacII CCGCGG 1 cut(s) 457
SalI GTCGAC 1 cut(s) 194
SatI GCNGC 2 cut(s) 75, 286
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 4 cut(s) 28, 43, 166, 228
SchI GAGTC 2 cut(s) 5, 31
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 1 cut(s) 346
SfoI GGCGCC 1 cut(s) 142
Sfr303I CCGCGG 1 cut(s) 457
SgrAI CRCCGGYG 1 cut(s) 137
SgrBI CCGCGG 1 cut(s) 457
SinI GGWCC 3 cut(s) 28, 43, 228
Sse9I AATT 1 cut(s) 446
SsiI CCGC 7 cut(s) 75, 87, 169, 205, 286, 454, 456
SspDI GGCGCC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 3 cut(s) 279, 294, 514
TaqI TCGA 7 cut(s) 66, 195, 261, 273, 359, 407, 462
TasI AATT 1 cut(s) 446
TauI GCSGC 2 cut(s) 77, 288
TfiI GAWTC 2 cut(s) 212, 356
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 2 cut(s) 187, 277
Tsp45I GTSAC 2 cut(s) 187, 277
TspDTI ATGAA 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 427
TspRI CASTG 1 cut(s) 244
Tth111I GACNNNGTC 1 cut(s) 232
VneI GTGCAC 1 cut(s) 385
VpaK11BI GGWCC 3 cut(s) 28, 43, 228
XagI CCTNNNNNAGG 1 cut(s) 302
XapI RAATTY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 195
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.