RLG00000013590

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013301
Physical Location & Seq
Reverse (-)
33670696 .. 33672266
1571 bp
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UTR
Exon/CDS
Intron
RLM00000013590

Sequence Viewer

Length: 378 bp
ATGCCCATTCTGCCCATTTCACCAAAGTCGAGAGGGTATACGACTCATAGTAACCGCAAATCAGAGTCTTCAGGGAGGAGCATGAATTCGTTGGACGCCCACATAGAAACCGTTGAGGACATTGTGGATAGCGGGAGCACTCTGTCGTGTCTGATTGCGCACTTGGAAGCGAAAGGGGCTTCGTCTGTGTCAGTGTCTACTTTTCTTGATAAACCATCGAGAAGAAAAGTTCACTTTAAGCTTCTAGGCAAGGGGAAGTTCTACCGAGGTTTCGAGTGTCCAGATTATTTTGTTGTGGGTTACGGGATGGACTTTGCTGAACTGTACAGGAATTTGCCTTATGTAGGTGTTCTGAAGCCGGAGCATTACAAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

126

Amino Acids

13.95

Weight (kDa)

8.99

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran PF00156 32 - 105 1.2e-08 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 159
AccI GTMKAC 2 cut(s) 38, 197
AciI CCGC 2 cut(s) 55, 132
AcsI RAATTY 2 cut(s) 85, 331
AcuI CTGAAG 2 cut(s) 54, 374
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 344
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw21I GWGCWC 1 cut(s) 140
ApoI RAATTY 2 cut(s) 85, 331
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 140
BccI CCATC 2 cut(s) 223, 301
BfaI CTAG 2 cut(s) 245, 376
BpiI GAAGAC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 324
BspACI CCGC 2 cut(s) 55, 132
BsrGI TGTACA 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 265
BssNAI GTATAC 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 96
Bst1107I GTATAC 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 112, 324
BstACI GRCGYC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 324
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 10, 176
BstV2I GAAGAC 1 cut(s) 60
BstZ17I GTATAC 1 cut(s) 39
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 198
CfoI GCGC 1 cut(s) 160
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 82
CviJI RGCY 3 cut(s) 179, 241, 358
CviKI_1 RGCY 3 cut(s) 179, 241, 358
CviQI GTAC 1 cut(s) 325
Eco57I CTGAAG 2 cut(s) 54, 374
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 85
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 39, 48, 83, 104, 342
FatI CATG 1 cut(s) 81
FauI CCCGC 1 cut(s) 125
FblI GTMKAC 2 cut(s) 38, 197
FokI GGATG 1 cut(s) 319
FspBI CTAG 2 cut(s) 245, 376
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 43, 65
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 3 cut(s) 39, 198, 232
Hpy188I TCNGA 3 cut(s) 64, 153, 354
Hpy188III TCNNGA 4 cut(s) 30, 206, 219, 281
Hpy8I GTNNAC 3 cut(s) 39, 198, 232
HpyCH4III ACNGT 2 cut(s) 112, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 176
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 158
LmnI GCTCC 3 cut(s) 78, 135, 361
LpnPI CCDG 4 cut(s) 57, 294, 313, 372
MaeI CTAG 2 cut(s) 245, 376
MaeIII GTNAC 2 cut(s) 50, 299
MboII GAAGA 2 cut(s) 60, 234
MhlI GDGCHC 1 cut(s) 140
MluCI AATT 2 cut(s) 85, 331
MlyI GAGTC 2 cut(s) 37, 74
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 26, 69, 109, 260
MseI TTAA 1 cut(s) 237
MspI CCGG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 10, 176
NlaIII CATG 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 159
PleI GAGTC 2 cut(s) 37, 73
PpsI GAGTC 2 cut(s) 37, 73
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 237
SchI GAGTC 2 cut(s) 37, 74
SduI GDGCHC 1 cut(s) 140
SetI ASST 3 cut(s) 243, 271, 349
Sse9I AATT 2 cut(s) 85, 331
SsiI CCGC 2 cut(s) 55, 132
SspMI CTAG 2 cut(s) 245, 376
TaaI ACNGT 2 cut(s) 112, 324
TaqI TCGA 3 cut(s) 29, 218, 273
TasI AATT 2 cut(s) 85, 331
TatI WGTACW 1 cut(s) 324
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 198
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 2 cut(s) 85, 331
XmiI GTMKAC 2 cut(s) 38, 197
XspI CTAG 2 cut(s) 245, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.