Rmu_sc0013374.1_g000005

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013374.1
OG0013301
Physical Location & Seq
Forward (+)
47211 .. 48650
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013374.1_g000005.1.cds

Sequence Viewer

Length: 579 bp
atgaattcgttggactcgcacatagagaccgtcctgtggaccccagaccaaatcacctcccgagtctccgagctcgccgccgagatctccgccgacctctctcacctctccgaacctcccgtcctcgtcggagtcgccaccggcgcttttctcttcctcgccgacttggcccgccacatccgcctccccgtcgccgtcgatttcatccgcgccgaatcctacggctccggcaccgagtccaatggcgcccccaagatttcttccgacttgaagctcgacgtcgccggccggcacgttgtcctggttgaggacattgtggatagcgggagcactctgtcgtgtctcattgcgcacttggaatggaaaggggcttcgtctgtgtcagtgtctacttttcttgataaaccatcgagaagaaaagttcactttaagcttctaggcaagggaaagttctaccgaggtttcgagtgtccagattattttgttgtgggttacggaatggactttgctgaactgtacaggaacttgccttatgttggtgttctgaagccggagcattacaagtgccagtcaccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

192

Amino Acids

21.06

Weight (kDa)

5.95

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc16I TGCGCA 1 cut(s) 351
AccB1I GGYRCC 2 cut(s) 230, 245
AccI GTMKAC 1 cut(s) 389
AccII CGCG 1 cut(s) 210
AciI CCGC 6 cut(s) 78, 90, 172, 181, 208, 324
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 566
AcyI GRCGYC 2 cut(s) 246, 279
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 3 cut(s) 36, 307, 536
AgsI TTSAA 1 cut(s) 271
AjnI CCWGG 1 cut(s) 300
AloI GAACNNNNNNTCC 2 cut(s) 105, 137
AluBI AGCT 3 cut(s) 73, 274, 433
AluI AGCT 3 cut(s) 73, 274, 433
Alw21I GWGCWC 2 cut(s) 75, 332
Alw26I GTCTC 3 cut(s) 20, 70, 347
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 168, 286
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspLEI GCGC 4 cut(s) 146, 212, 248, 352
AspS9I GGNCC 2 cut(s) 39, 169
AsuHPI GGTGA 3 cut(s) 46, 95, 564
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 39
BanI GGYRCC 2 cut(s) 230, 245
BanII GRGCYC 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 75, 332
BccI CCATC 1 cut(s) 415
BceAI ACGGC 2 cut(s) 179, 238
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 3 cut(s) 20, 70, 347
BfaI CTAG 1 cut(s) 437
BfoI RGCGCY 2 cut(s) 147, 249
BglI GCCNNNNNGGC 1 cut(s) 167
BglII AGATCT 1 cut(s) 84
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 39, 169
BmiI GGNNCC 4 cut(s) 41, 226, 232, 247
BmrFI CCNGG 1 cut(s) 302
BsaHI GRCGYC 2 cut(s) 246, 279
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 307, 536
Bse118I RCCGGY 3 cut(s) 140, 284, 288
Bse1I ACTGG 1 cut(s) 568
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 2 cut(s) 177, 204
BseLI CCNNNNNNNGG 3 cut(s) 36, 307, 536
BseMI GCAATG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 568
BseX3I CGGCCG 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 2 cut(s) 170, 288
BshNI GGYRCC 2 cut(s) 230, 245
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 2 cut(s) 75, 332
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 5 cut(s) 141, 228, 285, 289, 551
BslI CCNNNNNNNGG 3 cut(s) 36, 307, 536
BsmAI GTCTC 3 cut(s) 20, 70, 347
BsnI GGCC 2 cut(s) 170, 288
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 75, 332
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 6 cut(s) 78, 90, 172, 181, 208, 324
BspANI GGCC 2 cut(s) 170, 288
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 4 cut(s) 41, 226, 232, 247
BspT107I GGYRCC 2 cut(s) 230, 245
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 3 cut(s) 140, 284, 288
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 1 cut(s) 568
BssAI RCCGGY 3 cut(s) 140, 284, 288
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 2 cut(s) 246, 279
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 31, 516
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 2 cut(s) 246, 279
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 4 cut(s) 75, 172, 286, 290
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 177, 204
BstFNI CGCG 1 cut(s) 210
BstH2I RGCGCY 2 cut(s) 147, 249
BstHHI GCGC 4 cut(s) 146, 212, 248, 352
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 3 cut(s) 20, 70, 347
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 143, 167, 180
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstUI CGCG 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 286
BsuRI GGCC 2 cut(s) 170, 288
BtsCI GGATG 2 cut(s) 177, 204
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 4 cut(s) 75, 172, 286, 290
CfoI GCGC 4 cut(s) 146, 212, 248, 352
Cfr10I RCCGGY 3 cut(s) 140, 284, 288
Cfr13I GGNCC 2 cut(s) 39, 169
Csp6I GTAC 1 cut(s) 517
CviJI RGCY 8 cut(s) 73, 170, 225, 274, 288, 371, 433, 550
CviKI_1 RGCY 8 cut(s) 73, 170, 225, 274, 288, 371, 433, 550
CviQI GTAC 1 cut(s) 517
DinI GGCGCC 1 cut(s) 247
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 286
EagI CGGCCG 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 2 cut(s) 79, 170
Ecl136II GAGCTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 39
Eco52I CGGCCG 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 75
EgeI GGCGCC 1 cut(s) 247
EheI GGCGCC 1 cut(s) 247
FaiI YATR 2 cut(s) 23, 534
FauI CCCGC 2 cut(s) 179, 317
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 164, 191
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 437
FspI TGCGCA 1 cut(s) 351
GlaI GCGC 4 cut(s) 145, 211, 247, 351
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 2 cut(s) 147, 249
HaeIII GGCC 2 cut(s) 170, 288
HapII CCGG 5 cut(s) 141, 228, 285, 289, 551
HhaI GCGC 4 cut(s) 146, 212, 248, 352
Hin1I GRCGYC 2 cut(s) 246, 279
Hin6I GCGC 4 cut(s) 144, 210, 246, 350
HinP1I GCGC 4 cut(s) 144, 210, 246, 350
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 5 cut(s) 14, 63, 132, 215, 236
HpaII CCGG 5 cut(s) 141, 228, 285, 289, 551
HphI GGTGA 3 cut(s) 46, 95, 564
Hpy166II GTNNAC 3 cut(s) 39, 390, 424
Hpy188I TCNGA 5 cut(s) 70, 112, 131, 265, 546
Hpy188III TCNNGA 4 cut(s) 60, 398, 411, 473
Hpy8I GTNNAC 3 cut(s) 39, 390, 424
Hpy99I CGWCG 5 cut(s) 131, 194, 200, 281, 284
HpyCH4III ACNGT 2 cut(s) 31, 516
HpyCH4IV ACGT 2 cut(s) 279, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 167, 180
HpySE526I ACGT 2 cut(s) 279, 294
Hsp92I GRCGYC 2 cut(s) 246, 279
HspAI GCGC 4 cut(s) 144, 210, 246, 350
KasI GGCGCC 1 cut(s) 245
KroI GCCGGC 2 cut(s) 284, 288
KroNI GCCGGC 2 cut(s) 286, 290
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 3 cut(s) 230, 327, 553
MaeI CTAG 1 cut(s) 437
MaeII ACGT 2 cut(s) 279, 294
MaeIII GTNAC 2 cut(s) 491, 570
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 3 cut(s) 145, 252, 426
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 75, 332
MluCI AATT 1 cut(s) 4
Mly113I GGCGCC 1 cut(s) 246
MlyI GAGTC 4 cut(s) 8, 72, 141, 245
MmeI TCCRAC 2 cut(s) 109, 288
MnlI CCTC 9 cut(s) 67, 107, 116, 126, 134, 167, 194, 301, 452
MroNI GCCGGC 2 cut(s) 284, 288
MseI TTAA 1 cut(s) 429
MspI CCGG 5 cut(s) 141, 228, 285, 289, 551
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 3 cut(s) 143, 167, 180
NaeI GCCGGC 2 cut(s) 286, 290
NarI GGCGCC 1 cut(s) 246
NdeII GATC 1 cut(s) 84
NgoMIV GCCGGC 2 cut(s) 284, 288
NlaIV GGNNCC 4 cut(s) 41, 226, 232, 247
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 570
NsbI TGCGCA 1 cut(s) 351
PdiI GCCGGC 2 cut(s) 286, 290
PfeI GAWTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 4 cut(s) 8, 71, 140, 244
PluTI GGCGCC 1 cut(s) 249
PpsI GAGTC 4 cut(s) 8, 71, 140, 244
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 41, 226, 232, 247
PspPI GGNCC 2 cut(s) 39, 169
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
SacI GAGCTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 39, 169
SchI GAGTC 4 cut(s) 8, 72, 141, 245
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 75, 332
SfoI GGCGCC 1 cut(s) 247
SgrAI CRCCGGYG 1 cut(s) 140
SinI GGWCC 1 cut(s) 39
Sse9I AATT 1 cut(s) 4
SsiI CCGC 6 cut(s) 78, 90, 172, 181, 208, 324
SspDI GGCGCC 1 cut(s) 245
SspMI CTAG 1 cut(s) 437
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 31, 516
TaiI ACGT 2 cut(s) 282, 297
TaqI TCGA 4 cut(s) 198, 276, 410, 465
TasI AATT 1 cut(s) 4
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 215
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 570
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 2 cut(s) 17, 193
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 1 cut(s) 437
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.