MD10G1037900.v1.1

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013301
Physical Location & Seq
Reverse (-)
4982535 .. 4984293
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1037900.v1.1.491

Sequence Viewer

Length: 570 bp
ATGTCCTTGGACTCTCACATAGAGAGGGTCCTCTGGACTCCCGACCAAATCGCCGCCCGTGTTTCCGACCTCGCCGCCCAAATCTCCGCCGACTTCTCCCTCTCCTCCCTCTCCCAACCACCTGCCCTCGTAGGCGTCGCCACCGGCGCCTTTCTCTTCCTCGCCGACCTGGCCCGCCAAATCCCCCTCCCCGTCACCGTCGACTTCATCCGCGCCGAATCCTACGGCTCCGGGACCCAGTCCAATGGCGCCCCAACGATTTCCTTCGACTTGAAGGTCGACGTCACCGGCCGCCACGTCGTCCTGGTTGAGGACATTGTGGATACAGGAAGCACAATTGAGCGTCTGATTGCACACATGGAATCGAAAGGCGCTTCGTGTGTGTCGGTCTGCACATTTCTGGATAAACCATCGAGACGGAAGGTTCATTTTCAGCTTCTCAGCAACGGGAAATTCTACCGCGGTTTCGAGTGTCCAGATTACTTTGTTGTGGGCTATGGAATGGACTTTGATGAACGTTACAGGAACTTGCCGTACATTGGTGTATTGAAGCCCGAGCTGTATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

190

Amino Acids

20.84

Weight (kDa)

5.53

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran PF00156 16 - 170 3.7e-29 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 285
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 2 cut(s) 146, 248
AccI GTMKAC 2 cut(s) 201, 279
AccII CGCG 2 cut(s) 213, 462
AciI CCGC 8 cut(s) 54, 75, 87, 175, 211, 292, 460, 462
AclI AACGTT 1 cut(s) 517
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 4 cut(s) 135, 147, 249, 282
AfaI GTAC 1 cut(s) 536
AfiI CCNNNNNNNGG 2 cut(s) 310, 539
AgsI TTSAA 2 cut(s) 274, 550
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 2 cut(s) 168, 303
AluBI AGCT 2 cut(s) 436, 559
AluI AGCT 2 cut(s) 436, 559
Alw26I GTCTC 1 cut(s) 409
Ama87I CYCGRG 1 cut(s) 554
AoxI GGCC 2 cut(s) 171, 289
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 4 cut(s) 149, 215, 251, 374
AspS9I GGNCC 3 cut(s) 28, 172, 234
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 187, 277
AvaI CYCGRG 1 cut(s) 554
AvaII GGWCC 2 cut(s) 28, 234
BanI GGYRCC 2 cut(s) 146, 248
BccI CCATC 1 cut(s) 418
BceAI ACGGC 2 cut(s) 241, 517
BciT130I CCWGG 2 cut(s) 170, 305
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 409
BfoI RGCGCY 3 cut(s) 150, 252, 375
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 3 cut(s) 54, 75, 292
BlsI GCNGC 3 cut(s) 55, 76, 293
Bme1390I CCNGG 3 cut(s) 170, 232, 305
Bme18I GGWCC 2 cut(s) 28, 234
BmeT110I CYCGRG 1 cut(s) 554
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 3 cut(s) 28, 172, 234
BmiI GGNNCC 6 cut(s) 29, 148, 229, 235, 236, 250
BmrFI CCNGG 3 cut(s) 170, 232, 305
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 232
BsaHI GRCGYC 4 cut(s) 135, 147, 249, 282
BsaJI CCNNGG 2 cut(s) 6, 460
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 539
Bse118I RCCGGY 2 cut(s) 143, 287
Bse1I ACTGG 1 cut(s) 238
BseBI CCWGG 2 cut(s) 170, 305
BseDI CCNNGG 2 cut(s) 6, 460
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 310, 539
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 94
BseX3I CGGCCG 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 376
Bsh1236I CGCG 2 cut(s) 213, 462
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 2 cut(s) 173, 291
BshNI GGYRCC 2 cut(s) 146, 248
BsiEI CGRYCG 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 3 cut(s) 144, 231, 288
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 310, 539
BsmAI GTCTC 1 cut(s) 409
BsmBI CGTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 173, 291
BsoBI CYCGRG 1 cut(s) 554
BspACI CCGC 8 cut(s) 54, 75, 87, 175, 211, 292, 460, 462
BspANI GGCC 2 cut(s) 173, 291
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 2 cut(s) 213, 462
BspLI GGNNCC 6 cut(s) 29, 148, 229, 235, 236, 250
BspMI ACCTGC 1 cut(s) 130
BspT107I GGYRCC 2 cut(s) 146, 248
BsrFI RCCGGY 2 cut(s) 143, 287
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 2 cut(s) 143, 287
BssECI CCNNGG 2 cut(s) 6, 460
BssNI GRCGYC 4 cut(s) 135, 147, 249, 282
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 170, 305
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 4 cut(s) 135, 147, 249, 282
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 440
BstDSI CCRYGG 1 cut(s) 460
BstENI CCTNNNNNAGG 1 cut(s) 308
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 2 cut(s) 213, 462
BstH2I RGCGCY 3 cut(s) 150, 252, 375
BstHHI GCGC 4 cut(s) 149, 215, 251, 374
BstMAI GTCTC 1 cut(s) 409
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 146, 170
BstNI CCWGG 2 cut(s) 170, 305
BstSCI CCNGG 3 cut(s) 168, 230, 303
BstUI CGCG 2 cut(s) 213, 462
BstXI CCANNNNNNTGG 1 cut(s) 245
BstZI CGGCCG 1 cut(s) 289
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 173, 291
BtgI CCRYGG 1 cut(s) 460
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 175
CfoI GCGC 4 cut(s) 149, 215, 251, 374
Cfr10I RCCGGY 2 cut(s) 143, 287
Cfr13I GGNCC 3 cut(s) 28, 172, 234
Cfr42I CCGCGG 1 cut(s) 463
CseI GACGC 2 cut(s) 124, 332
Csp6I GTAC 1 cut(s) 535
CviAII CATG 1 cut(s) 358
CviJI RGCY 7 cut(s) 173, 228, 291, 436, 495, 553, 559
CviKI_1 RGCY 7 cut(s) 173, 228, 291, 436, 495, 553, 559
CviQI GTAC 1 cut(s) 535
DdeI CTNAG 1 cut(s) 440
DinI GGCGCC 2 cut(s) 148, 250
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 76
EclXI CGGCCG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 28, 234
Eco52I CGGCCG 1 cut(s) 289
Eco88I CYCGRG 1 cut(s) 554
EcoNI CCTNNNNNAGG 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 28, 234
EcoRII CCWGG 2 cut(s) 168, 303
EcoT14I CCWWGG 1 cut(s) 6
EgeI GGCGCC 2 cut(s) 148, 250
EheI GGCGCC 2 cut(s) 148, 250
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 409
FaeI CATG 1 cut(s) 361
FaiI YATR 4 cut(s) 20, 359, 498, 564
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 357
FauI CCCGC 1 cut(s) 182
FblI GTMKAC 2 cut(s) 201, 279
Fnu4HI GCNGC 3 cut(s) 54, 75, 292
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 54, 75, 292
GlaI GCGC 4 cut(s) 148, 214, 250, 373
GluI GCNGC 3 cut(s) 54, 75, 292
HaeII RGCGCY 3 cut(s) 150, 252, 375
HaeIII GGCC 2 cut(s) 173, 291
HapII CCGG 3 cut(s) 144, 231, 288
HgaI GACGC 2 cut(s) 124, 332
HhaI GCGC 4 cut(s) 149, 215, 251, 374
Hin1I GRCGYC 4 cut(s) 135, 147, 249, 282
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 4 cut(s) 147, 213, 249, 372
HinP1I GCGC 4 cut(s) 147, 213, 249, 372
HincII GTYRAC 2 cut(s) 202, 280
HindII GTYRAC 2 cut(s) 202, 280
HinfI GANTC 4 cut(s) 11, 37, 218, 362
HpaII CCGG 3 cut(s) 144, 231, 288
HphI GGTGA 2 cut(s) 187, 277
Hpy166II GTNNAC 2 cut(s) 202, 280
Hpy188I TCNGA 2 cut(s) 67, 348
Hpy188III TCNNGA 5 cut(s) 34, 41, 401, 414, 476
Hpy8I GTNNAC 2 cut(s) 202, 280
Hpy99I CGWCG 4 cut(s) 140, 203, 284, 302
HpyAV CCTTC 3 cut(s) 268, 274, 415
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 3 cut(s) 282, 297, 517
HpyCH4V TGCA 2 cut(s) 353, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 170
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 3 cut(s) 282, 297, 517
Hsp92I GRCGYC 4 cut(s) 135, 147, 249, 282
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 4 cut(s) 147, 213, 249, 372
KasI GGCGCC 2 cut(s) 146, 248
KflI GGGWCCC 1 cut(s) 234
KspI CCGCGG 1 cut(s) 463
LmnI GCTCC 1 cut(s) 233
MaeII ACGT 3 cut(s) 282, 297, 517
MaeIII GTNAC 3 cut(s) 193, 283, 518
MboII GAAGA 1 cut(s) 148
MfeI CAATTG 1 cut(s) 336
MluCI AATT 2 cut(s) 336, 452
Mly113I GGCGCC 2 cut(s) 147, 249
MlyI GAGTC 2 cut(s) 5, 31
MmeI TCCRAC 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 462
MspI CCGG 3 cut(s) 144, 231, 288
MspR9I CCNGG 3 cut(s) 170, 232, 305
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 2 cut(s) 170, 305
MvnI CGCG 2 cut(s) 213, 462
MwoI GCNNNNNNNGC 2 cut(s) 146, 170
NarI GGCGCC 2 cut(s) 147, 249
NciI CCSGG 1 cut(s) 232
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 6 cut(s) 29, 148, 229, 235, 236, 250
NmuCI GTSAC 2 cut(s) 193, 283
PaqCI CACCTGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 218, 362
PflFI GACNNNGTC 1 cut(s) 238
PfoI TCCNGGA 1 cut(s) 230
PkrI GCNGC 3 cut(s) 55, 76, 293
PleI GAGTC 2 cut(s) 5, 31
PluTI GGCGCC 2 cut(s) 150, 252
PpsI GAGTC 2 cut(s) 5, 31
PpuMI RGGWCCY 2 cut(s) 28, 234
Psp1406I AACGTT 1 cut(s) 517
Psp5II RGGWCCY 2 cut(s) 28, 234
Psp6I CCWGG 2 cut(s) 168, 303
PspGI CCWGG 2 cut(s) 168, 303
PspN4I GGNNCC 6 cut(s) 29, 148, 229, 235, 236, 250
PspPI GGNCC 3 cut(s) 28, 172, 234
PspPPI RGGWCCY 2 cut(s) 28, 234
PsrI GAACNNNNNNTAC 2 cut(s) 518, 550
PsyI GACNNNGTC 1 cut(s) 238
RsaI GTAC 1 cut(s) 536
RsaNI GTAC 1 cut(s) 535
SacII CCGCGG 1 cut(s) 463
SalI GTCGAC 2 cut(s) 200, 278
SatI GCNGC 3 cut(s) 54, 75, 292
Sau96I GGNCC 3 cut(s) 28, 172, 234
SchI GAGTC 2 cut(s) 5, 31
ScrFI CCNGG 3 cut(s) 170, 232, 305
SfoI GGCGCC 2 cut(s) 148, 250
Sfr303I CCGCGG 1 cut(s) 463
SgrAI CRCCGGYG 1 cut(s) 143
SgrBI CCGCGG 1 cut(s) 463
SinI GGWCC 2 cut(s) 28, 234
Sse9I AATT 2 cut(s) 336, 452
SsiI CCGC 8 cut(s) 54, 75, 87, 175, 211, 292, 460, 462
SspDI GGCGCC 2 cut(s) 146, 248
StyD4I CCNGG 3 cut(s) 168, 230, 303
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 3 cut(s) 285, 300, 520
TaqI TCGA 6 cut(s) 201, 267, 279, 365, 413, 468
TaqII GACCGA 1 cut(s) 376
TasI AATT 2 cut(s) 336, 452
TauI GCSGC 3 cut(s) 56, 77, 294
TfiI GAWTC 2 cut(s) 218, 362
TseFI GTSAC 2 cut(s) 193, 283
Tsp45I GTSAC 2 cut(s) 193, 283
TspDTI ATGAA 3 cut(s) 196, 416, 528
TspGWI ACGGA 1 cut(s) 433
Tth111I GACNNNGTC 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 28, 234
XagI CCTNNNNNAGG 1 cut(s) 308
XapI RAATTY 1 cut(s) 452
XmiI GTMKAC 2 cut(s) 201, 279
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.