FvH4_2g12860

Belongs to the purine pyrimidine phosphoribosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013301
Physical Location & Seq
Forward (+)
11302380 .. 11303993
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12860.t1

Sequence Viewer

Length: 579 bp
ATGAAATCGTTAGACTCCCACATAGAGACCGTCCTTTGGACCCCAGACCAAATCACCTCCCGAGTCTCCGACCTCGCCGCCGAGATCTCCGCCGACCTCTCTCACCTCTCCGACCCTCCCATCCTCGTCGGCGTCGCCACCGGCGCCTTTCTCTTCCTCGCCGACTTGGCCCGCCACATCCGCCTCCCCGTCTCCGTCGACTTCATCCGCGCCGAGTCCTACGGTTCCGGCACCGAGTCCAATGGCACACCCAAGATTTCTTCCGACTTGAAGCTCGACGTCGCCGGCCGGCACGTCGTCCTGGTTGAGGATATTGTGGATACGGGAAGCACTGTTTCGCGTCTGATTGAGTATTTGGAATCGAAAGGGGCTTCGTCTGTCTCAGTGGCTACTTTTCTTGATAAACCGTCCAGAAGAAAAGTTCAGTTTAAGCTTCTAGGCAAGGGCAAGTTCTACCGAGGTTTCGAGTGTCCAGATTATTTTGTTGTGGGTTACGGAATGGACTTTGCTGAACTATACAGGAACTTGCCTTATATTGGTGTGCTGAAGCCGGAGCAGTACAAGTGCCAGTCACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00983 ko01100 ko01110 map00230 map00983 map01100 map01110
Pfam Domains
Protein Families
Pribosyltran

Protein Analysis

193

Amino Acids

21.12

Weight (kDa)

5.81

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pribosyltran PF00156 17 - 169 1.2e-27 Phosphoribosyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71750 AT1G71750
fragaria_vesca FvH4_2g12860 FvH4_2g12860
malus_domestica MD05G1035600.v1.1 MD10G1037900.v1.1
prunus_persica Prupe.8G043500_v2.0.a1
pyrus_communis pycom05g02620 pycom10g02580
rosa_chinensis RchiOBHm_Chr6g0273931
rosa_laevigata RLG00000013590
rosa_multiflora Rmu_sc0000045.1_g000078 Rmu_sc0013374.1_g000005
rosa_roxburghii Rroxscaffold_7G00194860
rosa_rugosa Rorug06G0077700
rosa_samantha Rh6AG193300 Rh6DG188400
rosa_wichuraiana Rw6G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AccB1I GGYRCC 2 cut(s) 143, 230
AccI GTMKAC 1 cut(s) 198
AccII CGCG 2 cut(s) 210, 340
AciI CCGC 5 cut(s) 78, 90, 172, 181, 208
AcoI YGGCCR 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 566
AcyI GRCGYC 3 cut(s) 132, 144, 279
AfaI GTAC 1 cut(s) 560
AfiI CCNNNNNNNGG 3 cut(s) 36, 307, 536
AgsI TTSAA 1 cut(s) 271
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 2 cut(s) 274, 433
AluI AGCT 2 cut(s) 274, 433
Alw26I GTCTC 4 cut(s) 20, 70, 196, 385
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 168, 286
AspLEI GCGC 2 cut(s) 146, 212
AspS9I GGNCC 2 cut(s) 39, 169
AsuHPI GGTGA 3 cut(s) 46, 95, 564
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 39
BanI GGYRCC 2 cut(s) 143, 230
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 4 cut(s) 20, 70, 196, 385
BfaI CTAG 1 cut(s) 437
BfoI RGCGCY 1 cut(s) 147
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 167
BglII AGATCT 1 cut(s) 84
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 60
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 39, 169
BmiI GGNNCC 4 cut(s) 41, 145, 226, 232
BmrFI CCNGG 1 cut(s) 302
BsaHI GRCGYC 3 cut(s) 132, 144, 279
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 457
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 307, 536
Bse118I RCCGGY 3 cut(s) 140, 284, 288
Bse1I ACTGG 1 cut(s) 568
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 3 cut(s) 120, 177, 204
BseLI CCNNNNNNNGG 3 cut(s) 36, 307, 536
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 568
BseX3I CGGCCG 1 cut(s) 286
Bsh1236I CGCG 2 cut(s) 210, 340
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 2 cut(s) 170, 288
BshNI GGYRCC 2 cut(s) 143, 230
BsiEI CGRYCG 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 5 cut(s) 141, 228, 285, 289, 551
BslI CCNNNNNNNGG 3 cut(s) 36, 307, 536
BsmAI GTCTC 4 cut(s) 20, 70, 196, 385
BsmBI CGTCTC 1 cut(s) 196
BsnI GGCC 2 cut(s) 170, 288
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 5 cut(s) 78, 90, 172, 181, 208
BspANI GGCC 2 cut(s) 170, 288
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 2 cut(s) 210, 340
BspLI GGNNCC 4 cut(s) 41, 145, 226, 232
BspT107I GGYRCC 2 cut(s) 143, 230
BspTNI GGTCTC 1 cut(s) 20
BsrFI RCCGGY 3 cut(s) 140, 284, 288
BsrI ACTGG 1 cut(s) 568
BssAI RCCGGY 3 cut(s) 140, 284, 288
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 1 cut(s) 84
BssNI GRCGYC 3 cut(s) 132, 144, 279
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 4 cut(s) 31, 224, 334, 408
Bst6I CTCTTC 1 cut(s) 158
BstACI GRCGYC 3 cut(s) 132, 144, 279
BstC8I GCNNGC 3 cut(s) 172, 286, 290
BstDEI CTNAG 1 cut(s) 382
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 3 cut(s) 120, 177, 204
BstFNI CGCG 2 cut(s) 210, 340
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 212
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 4 cut(s) 20, 70, 196, 385
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 3 cut(s) 143, 167, 180
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstUI CGCG 2 cut(s) 210, 340
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 286
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 170, 288
BtrI CACGTC 1 cut(s) 295
BtsCI GGATG 3 cut(s) 120, 177, 204
BtsIMutI CAGTG 2 cut(s) 330, 390
Cac8I GCNNGC 3 cut(s) 172, 286, 290
CfoI GCGC 2 cut(s) 146, 212
Cfr10I RCCGGY 3 cut(s) 140, 284, 288
Cfr13I GGNCC 2 cut(s) 39, 169
CseI GACGC 2 cut(s) 121, 329
Csp6I GTAC 1 cut(s) 559
CviJI RGCY 7 cut(s) 170, 274, 288, 371, 389, 433, 550
CviKI_1 RGCY 7 cut(s) 170, 274, 288, 371, 389, 433, 550
CviQI GTAC 1 cut(s) 559
DdeI CTNAG 1 cut(s) 382
DinI GGCGCC 1 cut(s) 145
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 286
EagI CGGCCG 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 2 cut(s) 79, 170
EclXI CGGCCG 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 39
Eco52I CGGCCG 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 566
Eco88I CYCGRG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 300
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 196
FaiI YATR 3 cut(s) 23, 517, 534
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 3 cut(s) 107, 164, 191
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 437
GlaI GCGC 2 cut(s) 145, 211
GluI GCNGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 170, 288
HapII CCGG 5 cut(s) 141, 228, 285, 289, 551
HgaI GACGC 2 cut(s) 121, 329
HhaI GCGC 2 cut(s) 146, 212
Hin1I GRCGYC 3 cut(s) 132, 144, 279
Hin6I GCGC 2 cut(s) 144, 210
HinP1I GCGC 2 cut(s) 144, 210
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 5 cut(s) 14, 63, 215, 236, 359
HpaII CCGG 5 cut(s) 141, 228, 285, 289, 551
HphI GGTGA 3 cut(s) 46, 95, 564
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 70, 112, 265, 345
Hpy188III TCNNGA 4 cut(s) 60, 398, 411, 473
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 6 cut(s) 131, 137, 200, 281, 284, 299
HpyCH4III ACNGT 4 cut(s) 31, 224, 334, 408
HpyCH4IV ACGT 2 cut(s) 279, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 167, 180
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 2 cut(s) 279, 294
Hsp92I GRCGYC 3 cut(s) 132, 144, 279
HspAI GCGC 2 cut(s) 144, 210
KasI GGCGCC 1 cut(s) 143
KroI GCCGGC 2 cut(s) 284, 288
KroNI GCCGGC 2 cut(s) 286, 290
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 553
MaeI CTAG 1 cut(s) 437
MaeII ACGT 2 cut(s) 279, 294
MaeIII GTNAC 2 cut(s) 491, 570
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 3 cut(s) 145, 252, 426
MflI RGATCY 1 cut(s) 84
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 4 cut(s) 8, 72, 224, 245
MmeI TCCRAC 3 cut(s) 93, 135, 288
MroNI GCCGGC 2 cut(s) 284, 288
MseI TTAA 1 cut(s) 429
MspI CCGG 5 cut(s) 141, 228, 285, 289, 551
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MvnI CGCG 2 cut(s) 210, 340
MwoI GCNNNNNNNGC 3 cut(s) 143, 167, 180
NaeI GCCGGC 2 cut(s) 286, 290
NarI GGCGCC 1 cut(s) 144
NdeII GATC 1 cut(s) 84
NgoMIV GCCGGC 2 cut(s) 284, 288
NlaIV GGNNCC 4 cut(s) 41, 145, 226, 232
NmeAIII GCCGAG 2 cut(s) 106, 238
NmuCI GTSAC 1 cut(s) 570
PdiI GCCGGC 2 cut(s) 286, 290
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 4 cut(s) 8, 71, 223, 244
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 4 cut(s) 8, 71, 223, 244
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 4 cut(s) 41, 145, 226, 232
PspPI GGNCC 2 cut(s) 39, 169
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 1 cut(s) 560
RsaNI GTAC 1 cut(s) 559
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 2 cut(s) 39, 169
SchI GAGTC 4 cut(s) 8, 72, 224, 245
ScrFI CCNGG 1 cut(s) 302
SetI ASST 9 cut(s) 59, 75, 99, 108, 276, 282, 297, 435, 463
SfoI GGCGCC 1 cut(s) 145
SgrAI CRCCGGYG 1 cut(s) 140
SinI GGWCC 1 cut(s) 39
SsiI CCGC 5 cut(s) 78, 90, 172, 181, 208
SspDI GGCGCC 1 cut(s) 143
SspMI CTAG 1 cut(s) 437
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 4 cut(s) 31, 224, 334, 408
TaiI ACGT 2 cut(s) 282, 297
TaqI TCGA 4 cut(s) 198, 276, 362, 465
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 337, 390
TseFI GTSAC 1 cut(s) 570
Tsp45I GTSAC 1 cut(s) 570
TspDTI ATGAA 2 cut(s) 17, 193
TspGWI ACGGA 2 cut(s) 184, 510
TspRI CASTG 2 cut(s) 337, 390
VpaK11BI GGWCC 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 437
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.