AT1G71910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015359
Physical Location & Seq
Forward (+)
27064932 .. 27066109
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71910.1

Sequence Viewer

Length: 522 bp
ATGGCTCTGAATAGTGTCTCCTCTGAAGAATTTACCTTCCCATCGCTAGCTTCTCATGATTCTTCTCACCATTCCGGTCTTGATTCACCTCCTTTGTGGAAACACTCACCGGTTACTTCCTTTCGCCGGAAAGATTACGACTTTGGTTTGGCAAGATTAGTCATTGGAAAAGACGGTGATCATGATCAGAGGAAGAGCTTCTCGTACGTGGAGATGAGAAGTCGTTGGATCGACGACAAAGAAGAGGAGAAAATGGATATGTTATGGGAAGATCTCAACGAAGAATTGCCTCCAAGAAGTCAGAGTTTGAGAATTGTACATGGCGGCGACGGTGGAGAGAAGAAAACGGCTTTGTTTCCCGATGAGAGCTCTGCCGTGGCCGTGGGGTGTGGGATGAAGTTATCGAAGAAGACAAAGAAGAAGACGAATCTGAACGTTTTGGTGTTGATGAGGGTTTTGAAGAAGCTTATTGTGTTGCGAAGTTCGTCTCAGAGGTCGCCGGTGAAAACTCATCCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.61

Weight (kDa)

9.32

Isoelectric Point (pI)

69.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71910 AT1G71910
fragaria_vesca FvH4_4g19940
prunus_persica Prupe.8G056300_v2.0.a1
pyrus_communis pycom05g03380
rosa_chinensis RchiOBHm_Chr6g0272051
rosa_laevigata RLG00000013704
rosa_multiflora Rmu_sc0005786.1_g000006 Rmu_sc0013301.1_g000002
rosa_roxburghii Rroxscaffold_7G00196620
rosa_rugosa Rorug06G0065400
rosa_samantha Rh6AG182700 Rh6BG184500 Rh6CG183800 Rh6DG175400
rosa_wichuraiana Rw6G015720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 324
AclI AACGTT 1 cut(s) 435
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 2 cut(s) 206, 318
AfiI CCNNNNNNNGG 1 cut(s) 126
AgeI ACCGGT 1 cut(s) 109
AgsI TTSAA 1 cut(s) 460
AluBI AGCT 4 cut(s) 50, 198, 369, 466
AluI AGCT 4 cut(s) 50, 198, 369, 466
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 2 cut(s) 22, 492
AlwI GGATC 1 cut(s) 236
AoxI GGCC 1 cut(s) 378
ApoI RAATTY 1 cut(s) 29
AsiGI ACCGGT 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 197
AsuHPI GGTGA 5 cut(s) 59, 78, 99, 188, 514
AsuNHI GCTAGC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 371
BbsI GAAGAC 2 cut(s) 416, 428
Bbv12I GWGCWC 1 cut(s) 371
BccI CCATC 1 cut(s) 49
BceAI ACGGC 3 cut(s) 359, 363, 365
BclI TGATCA 2 cut(s) 178, 184
BcoDI GTCTC 2 cut(s) 22, 492
BfaI CTAG 1 cut(s) 47
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 325
BlsI GCNGC 1 cut(s) 326
BmtI GCTAGC 1 cut(s) 50
BpiI GAAGAC 2 cut(s) 416, 428
BsaAI YACGTR 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 375, 381, 515
BsaWI WCCGGW 2 cut(s) 74, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 2 cut(s) 109, 499
Bse8I GATNNNNATC 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 375, 381, 515
BseGI GGATG 2 cut(s) 399, 511
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 503
BseRI GAGGAG 2 cut(s) 10, 260
BshFI GGCC 1 cut(s) 380
BshTI ACCGGT 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 371
BsiSI CCGG 4 cut(s) 75, 110, 127, 500
BsiWI CGTACG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 2 cut(s) 22, 492
BsmBI CGTCTC 1 cut(s) 492
BsnI GGCC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 371
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 4 cut(s) 178, 184, 228, 271
BspACI CCGC 1 cut(s) 324
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 502
BspHI TCATGA 2 cut(s) 55, 181
BspOI GCTAGC 1 cut(s) 50
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 188
BsrFI RCCGGY 2 cut(s) 109, 499
BsrGI TGTACA 1 cut(s) 316
BssAI RCCGGY 2 cut(s) 109, 499
BssECI CCNNGG 3 cut(s) 375, 381, 515
BssMI GATC 4 cut(s) 178, 184, 228, 271
Bst4CI ACNGT 3 cut(s) 176, 332, 519
Bst6I CTCTTC 2 cut(s) 188, 237
BstAUI TGTACA 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 1 cut(s) 489
BstDSI CCRYGG 3 cut(s) 375, 381, 515
BstF5I GGATG 2 cut(s) 399, 511
BstKTI GATC 4 cut(s) 181, 187, 231, 274
BstMAI GTCTC 2 cut(s) 22, 492
BstMBI GATC 4 cut(s) 178, 184, 228, 271
BstV2I GAAGAC 2 cut(s) 416, 428
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 380
BtgI CCRYGG 3 cut(s) 375, 381, 515
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 399, 511
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 2 cut(s) 55, 181
Cfr10I RCCGGY 2 cut(s) 109, 499
Csp6I GTAC 2 cut(s) 205, 317
CspAI ACCGGT 1 cut(s) 109
CviAII CATG 3 cut(s) 56, 182, 320
CviJI RGCY 7 cut(s) 5, 50, 198, 350, 369, 380, 466
CviKI_1 RGCY 7 cut(s) 5, 50, 198, 350, 369, 380, 466
CviQI GTAC 2 cut(s) 205, 317
DdeI CTNAG 1 cut(s) 489
DpnI GATC 4 cut(s) 180, 186, 230, 273
DpnII GATC 4 cut(s) 178, 184, 228, 271
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 188, 237
EarI CTCTTC 2 cut(s) 188, 237
Ecl136II GAGCTC 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 3 cut(s) 59, 185, 323
FaiI YATR 5 cut(s) 57, 183, 260, 265, 321
FatI CATG 3 cut(s) 55, 181, 319
FbaI TGATCA 2 cut(s) 178, 184
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 2 cut(s) 406, 498
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 325
HaeIII GGCC 1 cut(s) 380
HapII CCGG 4 cut(s) 75, 110, 127, 500
Hin1II CATG 3 cut(s) 59, 185, 323
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 59, 83, 427
HpaII CCGG 4 cut(s) 75, 110, 127, 500
HphI GGTGA 5 cut(s) 59, 78, 99, 188, 514
Hpy188I TCNGA 6 cut(s) 9, 25, 189, 303, 432, 492
Hpy188III TCNNGA 4 cut(s) 56, 80, 182, 359
Hpy99I CGWCG 2 cut(s) 236, 332
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 3 cut(s) 176, 332, 519
HpyCH4IV ACGT 2 cut(s) 207, 435
HpyF3I CTNAG 1 cut(s) 489
HpySE526I ACGT 2 cut(s) 207, 435
Hsp92II CATG 3 cut(s) 59, 185, 323
Ksp22I TGATCA 2 cut(s) 178, 184
Kzo9I GATC 4 cut(s) 178, 184, 228, 271
LguI GCTCTTC 1 cut(s) 188
LpnPI CCDG 4 cut(s) 88, 123, 140, 513
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 207, 435
MaeIII GTNAC 1 cut(s) 112
MalI GATC 4 cut(s) 180, 186, 230, 273
MboI GATC 4 cut(s) 178, 184, 228, 271
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 3 cut(s) 29, 284, 312
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 7 cut(s) 31, 99, 183, 238, 300, 444, 486
MroXI GAANNNNTTC 1 cut(s) 197
MspI CCGG 4 cut(s) 75, 110, 127, 500
NdeII GATC 4 cut(s) 178, 184, 228, 271
NheI GCTAGC 1 cut(s) 46
NlaIII CATG 3 cut(s) 59, 185, 323
PagI TCATGA 2 cut(s) 55, 181
PciSI GCTCTTC 1 cut(s) 188
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 59, 83, 427
Pfl23II CGTACG 1 cut(s) 204
PinAI ACCGGT 1 cut(s) 109
PkrI GCNGC 1 cut(s) 326
Ppu21I YACGTR 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 435
PspLI CGTACG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 206, 318
RsaNI GTAC 2 cut(s) 205, 317
SacI GAGCTC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 4 cut(s) 178, 184, 228, 271
SduI GDGCHC 1 cut(s) 371
SetI ASST 9 cut(s) 38, 52, 91, 200, 210, 371, 438, 468, 497
SgrAI CRCCGGYG 1 cut(s) 499
Sse9I AATT 3 cut(s) 29, 284, 312
SsiI CCGC 1 cut(s) 324
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 371
TaaI ACNGT 3 cut(s) 176, 332, 519
TaiI ACGT 2 cut(s) 210, 438
TaqI TCGA 2 cut(s) 231, 404
TasI AATT 3 cut(s) 29, 284, 312
TatI WGTACW 1 cut(s) 316
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 3 cut(s) 59, 83, 427
TspDTI ATGAA 1 cut(s) 410
XapI RAATTY 1 cut(s) 29
XmnI GAANNNNTTC 1 cut(s) 197
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.