RLG00000013704

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015359
Physical Location & Seq
Forward (+)
36156706 .. 36157179
474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013704

Sequence Viewer

Length: 474 bp
ATGGCCACAGATGATTTCAGCTTCCCCACAGTACACAAAAGCAGTAGTACTAGTAACATCCATTTCCCTCCTCTGTGGCGGCCATCTCCGGCAGCCGCCTGCACAGATGATGAAGAAGATCACGCAGCCCTAAGAACTAGTCCTGTGGGGAATATGGAGGGGGTTGATGATGATCAGATAATAGTTAGTAGTGATGTTCGAGATCAGGAGGAGAAAATGGACATGCTATGGGAGGATTTCAATGAGGAATTGTATCCGGTGAAGTCAACGTCGGATTATAGTTACATGTCCGGCGAGATGCTGCAACTGGGTTGTGTAGGTCTTGGTGCTCTCAACTTGTCCAAATCTAATGCTGCTAGAAATAGTAGTACTATTACAAACCCAGGTGTGGTCGTGATTGTCAAACTCTTGAAAAGGCTATTCTTCCTCCATAATTCTCATCATCACAACCTCAACAAACCTGCAAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.46

Weight (kDa)

5.24

Isoelectric Point (pI)

66.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71910 AT1G71910
fragaria_vesca FvH4_4g19940
prunus_persica Prupe.8G056300_v2.0.a1
pyrus_communis pycom05g03380
rosa_chinensis RchiOBHm_Chr6g0272051
rosa_laevigata RLG00000013704
rosa_multiflora Rmu_sc0005786.1_g000006 Rmu_sc0013301.1_g000002
rosa_roxburghii Rroxscaffold_7G00196620
rosa_rugosa Rorug06G0065400
rosa_samantha Rh6AG182700 Rh6BG184500 Rh6CG183800 Rh6DG175400
rosa_wichuraiana Rw6G015720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
AciI CCGC 2 cut(s) 79, 96
AcoI YGGCCR 2 cut(s) 3, 80
AfaI GTAC 3 cut(s) 33, 49, 370
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 241, 412
AhlI ACTAGT 2 cut(s) 50, 137
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 331
AoxI GGCC 2 cut(s) 3, 80
ApeKI GCWGC 4 cut(s) 92, 125, 301, 353
AsuHPI GGTGA 1 cut(s) 271
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 4 cut(s) 104, 137, 288, 340
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 384
BciVI GTATCC 1 cut(s) 264
BclI TGATCA 1 cut(s) 172
BcuI ACTAGT 2 cut(s) 50, 137
BfaI CTAG 3 cut(s) 51, 138, 357
BfuAI ACCTGC 1 cut(s) 469
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 354
BlsI GCNGC 6 cut(s) 81, 94, 97, 127, 303, 355
BmcAI AGTACT 2 cut(s) 49, 370
Bme1390I CCNGG 1 cut(s) 384
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 388
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 60, 224
BseXI GCAGC 4 cut(s) 104, 137, 288, 340
BsgI GTGCAG 1 cut(s) 85
BshFI GGCC 2 cut(s) 5, 82
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 3 cut(s) 89, 257, 291
BslI CCNNNNNNNGG 1 cut(s) 388
BsnI GGCC 2 cut(s) 5, 82
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 3 cut(s) 118, 172, 202
BspACI CCGC 2 cut(s) 79, 96
BspANI GGCC 2 cut(s) 5, 82
BspMI ACCTGC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 3 cut(s) 118, 172, 202
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 2 cut(s) 31, 471
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 3 cut(s) 121, 175, 205
BstMBI GATC 3 cut(s) 118, 172, 202
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 2 cut(s) 226, 289
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 4 cut(s) 104, 137, 288, 340
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 5, 82
BtsCI GGATG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 3 cut(s) 32, 48, 369
CviAII CATG 2 cut(s) 223, 286
CviJI RGCY 6 cut(s) 5, 21, 82, 95, 128, 418
CviKI_1 RGCY 6 cut(s) 5, 21, 82, 95, 128, 418
CviQI GTAC 3 cut(s) 32, 48, 369
DdeI CTNAG 1 cut(s) 131
DpnI GATC 3 cut(s) 120, 174, 204
DpnII GATC 3 cut(s) 118, 172, 202
EaeI YGGCCR 2 cut(s) 3, 80
EcoRII CCWGG 1 cut(s) 382
FaeI CATG 2 cut(s) 226, 289
FaiI YATR 6 cut(s) 155, 224, 229, 279, 287, 432
FatI CATG 2 cut(s) 222, 285
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 354
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 354
FspBI CTAG 3 cut(s) 51, 138, 357
GluI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 354
HaeIII GGCC 2 cut(s) 5, 82
HapII CCGG 3 cut(s) 89, 257, 291
Hin1II CATG 2 cut(s) 226, 289
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HpaII CCGG 3 cut(s) 89, 257, 291
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 34, 267
Hpy188I TCNGA 2 cut(s) 177, 274
Hpy188III TCNNGA 4 cut(s) 200, 206, 394, 409
Hpy8I GTNNAC 2 cut(s) 34, 267
Hpy99I CGWCG 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 31, 471
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 102, 304, 464
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 2 cut(s) 226, 289
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 118, 172, 202
LpnPI CCDG 9 cut(s) 102, 112, 156, 191, 270, 293, 304, 369, 396
Lsp1109I GCAGC 4 cut(s) 104, 137, 288, 340
LweI GCATC 1 cut(s) 288
MaeI CTAG 3 cut(s) 51, 138, 357
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 53, 281
MalI GATC 3 cut(s) 120, 174, 204
MboI GATC 3 cut(s) 118, 172, 202
MboII GAAGA 3 cut(s) 125, 128, 415
MhlI GDGCHC 1 cut(s) 331
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 248, 433
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 8 cut(s) 78, 81, 151, 202, 226, 238, 437, 461
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 89, 257, 291
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
NdeII GATC 3 cut(s) 118, 172, 202
NlaIII CATG 2 cut(s) 226, 289
NspI RCATGY 2 cut(s) 226, 289
PciI ACATGT 1 cut(s) 285
PkrI GCNGC 6 cut(s) 81, 94, 97, 127, 303, 355
PscI ACATGT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
RsaI GTAC 3 cut(s) 33, 49, 370
RsaNI GTAC 3 cut(s) 32, 48, 369
SatI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 354
Sau3AI GATC 3 cut(s) 118, 172, 202
ScaI AGTACT 2 cut(s) 49, 370
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 331
SetI ASST 6 cut(s) 23, 272, 322, 388, 453, 463
SfaNI GCATC 1 cut(s) 288
SpeI ACTAGT 2 cut(s) 50, 137
Sse9I AATT 2 cut(s) 248, 433
SsiI CCGC 2 cut(s) 79, 96
SspMI CTAG 3 cut(s) 51, 138, 357
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 31, 471
TaiI ACGT 1 cut(s) 272
TaqI TCGA 1 cut(s) 199
TasI AATT 2 cut(s) 248, 433
TatI WGTACW 3 cut(s) 31, 47, 368
TauI GCSGC 2 cut(s) 82, 98
TseI GCWGC 4 cut(s) 92, 125, 301, 353
TspDTI ATGAA 1 cut(s) 126
XceI RCATGY 2 cut(s) 226, 289
XspI CTAG 3 cut(s) 51, 138, 357
ZrmI AGTACT 2 cut(s) 49, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.