pycom05g03380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015359
Physical Location & Seq
Forward (+)
3864621 .. 3865091
471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g03380.1

Sequence Viewer

Length: 471 bp
ATGGACACAGACGATTTCAGCTTCCCCACACACAATTTCCCTTCAACTCCTATCGACTCACCCCCGTTGTGGTGCTTATCTCCTGCAGCAGAAGAAGATCGTAATCATGGAGAAGACATCACGGATGCTGTAAATTGTAGTTATCAAAGAAGAAAGAGCGTTTCACATATCGAGCGTGGCGGCCGGAAAATGAGAGAGAAGGAAGAAGAGGAGACTAAGACGATGGACATGCTTTGGGAAGATTTCAACGAAGAACTACCAATGTCAAGAACTGCTGCAAGATCAGACTACTCTGGTAGGTTTTCACAAGAGATACTAAAACAATTGGGCTGCGTTCAATCTTTCAAGTTTTCGAAAACCAACAGTACTACTACTACTGCTGTCGGCGTTGCGGGGATTATGAAGGTCATAAAAAGGTTGTTCTTCCTCCACAACCCTAATCACAAACTCAAGAAACCTGCATGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.91

Weight (kDa)

6.52

Isoelectric Point (pI)

66.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71910 AT1G71910
fragaria_vesca FvH4_4g19940
prunus_persica Prupe.8G056300_v2.0.a1
pyrus_communis pycom05g03380
rosa_chinensis RchiOBHm_Chr6g0272051
rosa_laevigata RLG00000013704
rosa_multiflora Rmu_sc0005786.1_g000006 Rmu_sc0013301.1_g000002
rosa_roxburghii Rroxscaffold_7G00196620
rosa_rugosa Rorug06G0065400
rosa_samantha Rh6AG182700 Rh6BG184500 Rh6CG183800 Rh6DG175400
rosa_wichuraiana Rw6G015720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AciI CCGC 2 cut(s) 180, 392
AcoI YGGCCR 2 cut(s) 181, 464
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 4 cut(s) 45, 247, 338, 346
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 2 cut(s) 181, 464
ApeKI GCWGC 3 cut(s) 86, 275, 330
AsuHPI GGTGA 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 353
BalI TGGCCA 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 98, 262, 317
BccI CCATC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 466
BisI GCNGC 4 cut(s) 87, 181, 276, 331
BlsI GCNGC 4 cut(s) 88, 182, 277, 332
BmcAI AGTACT 1 cut(s) 367
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 102
BseGI GGATG 1 cut(s) 130
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 3 cut(s) 98, 262, 317
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 183, 466
BsiEI CGRYCG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 2 cut(s) 183, 466
Bsp119I TTCGAA 1 cut(s) 353
Bsp143I GATC 2 cut(s) 97, 281
BspACI CCGC 2 cut(s) 180, 392
BspANI GGCC 2 cut(s) 183, 466
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 353
BssMI GATC 2 cut(s) 97, 281
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 2 cut(s) 100, 284
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 2 cut(s) 97, 281
BstMCI CGRYCG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 3 cut(s) 98, 262, 317
BstV2I GAAGAC 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 183, 466
BtsCI GGATG 1 cut(s) 130
BveI ACCTGC 1 cut(s) 466
Csp6I GTAC 1 cut(s) 366
CviAII CATG 4 cut(s) 107, 229, 462, 468
CviJI RGCY 4 cut(s) 21, 183, 330, 466
CviKI_1 RGCY 4 cut(s) 21, 183, 330, 466
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 99, 283
DpnII GATC 2 cut(s) 97, 281
EaeI YGGCCR 2 cut(s) 181, 464
EagI CGGCCG 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 181
FaeI CATG 4 cut(s) 110, 232, 465, 471
FaiI YATR 7 cut(s) 108, 168, 230, 401, 410, 463, 469
FatI CATG 4 cut(s) 106, 228, 461, 467
FauI CCCGC 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 87, 181, 276, 331
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 87, 181, 276, 331
GluI GCNGC 4 cut(s) 87, 181, 276, 331
HaeIII GGCC 2 cut(s) 183, 466
HapII CCGG 1 cut(s) 184
Hin1II CATG 4 cut(s) 110, 232, 465, 471
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 267, 451
HpyAV CCTTC 3 cut(s) 51, 193, 397
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4V TGCA 3 cut(s) 86, 278, 461
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 4 cut(s) 110, 232, 465, 471
Kzo9I GATC 2 cut(s) 97, 281
LpnPI CCDG 3 cut(s) 96, 197, 279
Lsp1109I GCAGC 3 cut(s) 98, 262, 317
LweI GCATC 1 cut(s) 115
MalI GATC 2 cut(s) 99, 283
MboI GATC 2 cut(s) 97, 281
MboII GAAGA 9 cut(s) 104, 107, 125, 162, 215, 218, 251, 263, 415
MfeI CAATTG 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 466
MluCI AATT 3 cut(s) 34, 133, 323
MluNI TGGCCA 1 cut(s) 466
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 2 cut(s) 202, 437
Mox20I TGGCCA 1 cut(s) 466
MscI TGGCCA 1 cut(s) 466
MslI CAYNNNNRTG 1 cut(s) 466
Msp20I TGGCCA 1 cut(s) 466
MspI CCGG 1 cut(s) 184
MunI CAATTG 1 cut(s) 323
NdeII GATC 2 cut(s) 97, 281
NlaIII CATG 4 cut(s) 110, 232, 465, 471
NspI RCATGY 1 cut(s) 232
NspV TTCGAA 1 cut(s) 353
PkrI GCNGC 4 cut(s) 88, 182, 277, 332
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 88
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 1 cut(s) 466
SatI GCNGC 4 cut(s) 87, 181, 276, 331
Sau3AI GATC 2 cut(s) 97, 281
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 1 cut(s) 50
SetI ASST 5 cut(s) 23, 302, 408, 419, 460
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 466
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 3 cut(s) 34, 133, 323
SsiI CCGC 2 cut(s) 180, 392
TaaI ACNGT 1 cut(s) 365
TaqI TCGA 3 cut(s) 54, 171, 353
TasI AATT 3 cut(s) 34, 133, 323
TatI WGTACW 1 cut(s) 365
TauI GCSGC 1 cut(s) 183
TseI GCWGC 3 cut(s) 86, 275, 330
TspDTI ATGAA 1 cut(s) 416
TspGWI ACGGA 1 cut(s) 137
XceI RCATGY 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.