Rh6BG184500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015359
Physical Location & Seq
Forward (+)
33879250 .. 33879714
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG184500.1

Sequence Viewer

Length: 465 bp
ATGGCCACAGATGATTTCAGCTTCCCCACAGTACACAAAAGCAGTACTACTAGTAACATCCATTTCCCTCCTCTGTGGCGGCCATCTCCGGCAGCCGCCTGCACAGATGAAGAAGAAGATCACGCAGCCCTAATAACTAGTCCTGTGGAGGCTATCGAGGGGGTTGATGATGATCAGATAATAGTTAGTAGTGATGTTCAAGATCAGGAGAAGAAAATGGACATGCTATGGGAGGATTTCAATGAGGAATTGTATCCGGTAAGGTCAACGTCGGATTACAGTTACGTGTCCGGCGAGATGCTGCAACTGGGTTGTGTAGGTCTTGGTGCTTTCAAATCTAATGCTGCTAGAAATAGTAGTACTATTACAAACCCAGGTGTGGTCGCGATTGTCAAACTCTTGAAAAAGCTATTCTTCCTCCATAATTCTCATCATCACAACCTCAACAAACCTGCAAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.09

Weight (kDa)

5.1

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71910 AT1G71910
fragaria_vesca FvH4_4g19940
prunus_persica Prupe.8G056300_v2.0.a1
pyrus_communis pycom05g03380
rosa_chinensis RchiOBHm_Chr6g0272051
rosa_laevigata RLG00000013704
rosa_multiflora Rmu_sc0005786.1_g000006 Rmu_sc0013301.1_g000002
rosa_roxburghii Rroxscaffold_7G00196620
rosa_rugosa Rorug06G0065400
rosa_samantha Rh6AG182700 Rh6BG184500 Rh6CG183800 Rh6DG175400
rosa_wichuraiana Rw6G015720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 460
AccII CGCG 1 cut(s) 386
AciI CCGC 2 cut(s) 79, 96
AcoI YGGCCR 2 cut(s) 3, 80
AfaI GTAC 3 cut(s) 33, 46, 361
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 4 cut(s) 200, 241, 334, 403
AhlI ACTAGT 2 cut(s) 50, 137
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 21, 409
AluI AGCT 2 cut(s) 21, 409
AoxI GGCC 2 cut(s) 3, 80
ApeKI GCWGC 4 cut(s) 92, 125, 301, 344
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 4 cut(s) 104, 137, 288, 331
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 375
BciVI GTATCC 1 cut(s) 264
BclI TGATCA 1 cut(s) 172
BcuI ACTAGT 2 cut(s) 50, 137
BfaI CTAG 3 cut(s) 51, 138, 348
BfuAI ACCTGC 1 cut(s) 460
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 345
BlsI GCNGC 6 cut(s) 81, 94, 97, 127, 303, 346
BmcAI AGTACT 2 cut(s) 46, 361
Bme1390I CCNGG 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 375
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 379
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 4 cut(s) 104, 137, 288, 331
BsgI GTGCAG 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 5, 82
BsiSI CCGG 3 cut(s) 89, 257, 291
BslI CCNNNNNNNGG 1 cut(s) 379
BsnI GGCC 2 cut(s) 5, 82
Bsp143I GATC 3 cut(s) 118, 172, 202
Bsp68I TCGCGA 1 cut(s) 386
BspACI CCGC 2 cut(s) 79, 96
BspANI GGCC 2 cut(s) 5, 82
BspFNI CGCG 1 cut(s) 386
BspMI ACCTGC 1 cut(s) 460
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 3 cut(s) 118, 172, 202
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 3 cut(s) 31, 281, 462
BstBAI YACGTR 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 386
BstKTI GATC 3 cut(s) 121, 175, 205
BstMBI GATC 3 cut(s) 118, 172, 202
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 373
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 4 cut(s) 104, 137, 288, 331
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 2 cut(s) 5, 82
BtsCI GGATG 1 cut(s) 57
BtuMI TCGCGA 1 cut(s) 386
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 100
Csp6I GTAC 3 cut(s) 32, 45, 360
CviAII CATG 1 cut(s) 223
CviJI RGCY 7 cut(s) 5, 21, 82, 95, 128, 152, 409
CviKI_1 RGCY 7 cut(s) 5, 21, 82, 95, 128, 152, 409
CviQI GTAC 3 cut(s) 32, 45, 360
DpnI GATC 3 cut(s) 120, 174, 204
DpnII GATC 3 cut(s) 118, 172, 202
EaeI YGGCCR 2 cut(s) 3, 80
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 1 cut(s) 226
FaiI YATR 3 cut(s) 224, 229, 423
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FatI CATG 1 cut(s) 222
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 345
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 345
FspBI CTAG 3 cut(s) 51, 138, 348
GluI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 345
HaeIII GGCC 2 cut(s) 5, 82
HapII CCGG 3 cut(s) 89, 257, 291
Hin1II CATG 1 cut(s) 226
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HpaII CCGG 3 cut(s) 89, 257, 291
Hpy166II GTNNAC 2 cut(s) 34, 267
Hpy188I TCNGA 2 cut(s) 177, 274
Hpy188III TCNNGA 4 cut(s) 200, 206, 385, 400
Hpy8I GTNNAC 2 cut(s) 34, 267
Hpy99I CGWCG 1 cut(s) 274
HpyCH4III ACNGT 3 cut(s) 31, 281, 462
HpyCH4IV ACGT 2 cut(s) 269, 285
HpyCH4V TGCA 3 cut(s) 102, 304, 455
HpySE526I ACGT 2 cut(s) 269, 285
Hsp92II CATG 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 118, 172, 202
LpnPI CCDG 9 cut(s) 102, 112, 156, 191, 270, 293, 304, 360, 387
Lsp1109I GCAGC 4 cut(s) 104, 137, 288, 331
LweI GCATC 1 cut(s) 288
MaeI CTAG 3 cut(s) 51, 138, 348
MaeII ACGT 2 cut(s) 269, 285
MaeIII GTNAC 2 cut(s) 53, 281
MalI GATC 3 cut(s) 120, 174, 204
MboI GATC 3 cut(s) 118, 172, 202
MboII GAAGA 5 cut(s) 122, 125, 128, 223, 406
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 248, 424
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 8 cut(s) 78, 81, 142, 151, 226, 238, 428, 452
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 89, 257, 291
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 386
NdeII GATC 3 cut(s) 118, 172, 202
NlaIII CATG 1 cut(s) 226
NruI TCGCGA 1 cut(s) 386
NspI RCATGY 1 cut(s) 226
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PkrI GCNGC 6 cut(s) 81, 94, 97, 127, 303, 346
Ppu21I YACGTR 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
RruI TCGCGA 1 cut(s) 386
RsaI GTAC 3 cut(s) 33, 46, 361
RsaNI GTAC 3 cut(s) 32, 45, 360
SatI GCNGC 6 cut(s) 80, 93, 96, 126, 302, 345
Sau3AI GATC 3 cut(s) 118, 172, 202
ScaI AGTACT 2 cut(s) 46, 361
ScrFI CCNGG 1 cut(s) 375
SetI ASST 9 cut(s) 23, 266, 272, 288, 322, 379, 411, 444, 454
SfaNI GCATC 1 cut(s) 288
SpeI ACTAGT 2 cut(s) 50, 137
Sse9I AATT 2 cut(s) 248, 424
SsiI CCGC 2 cut(s) 79, 96
SspMI CTAG 3 cut(s) 51, 138, 348
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 3 cut(s) 31, 281, 462
TaiI ACGT 2 cut(s) 272, 288
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 248, 424
TatI WGTACW 3 cut(s) 31, 44, 359
TauI GCSGC 2 cut(s) 82, 98
TseI GCWGC 4 cut(s) 92, 125, 301, 344
TspDTI ATGAA 1 cut(s) 123
XceI RCATGY 1 cut(s) 226
XspI CTAG 3 cut(s) 51, 138, 348
ZrmI AGTACT 2 cut(s) 46, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.