Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0015359

Physical Location & Seq

Genomic Coordinates Reverse (-)

30405778 .. 30406250

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCACAGATGATTTCAGCTTCCCCACAGTACACAAAAGCAGTACTGCTAGTAACATCCATTTCCCTCCTCTGTGGCGGCCATCTCCGGCAGCCGCTATCGAGGGGGTTGATGATGATCAGATAATAGTTAGTAGTGATGTTCAAGATCAGGAGAAGAAAATGGACATGCTATGGGAGGATTTCAATGAGGAATTGTATCCGGTAAGGTCAAAGTCGGATTACAGTTACGTGTCCGGCGAGATGCTGCAACTGGGTTGTGTAGGTCTTGGTGCTTTCAACTTGTCCAAATCTAATGCTGCTAGAAATAGTAGTACTATTACAAACCCAGGTGTGGTCGCGATTGTCAAACTCTTGAAAAAGCTATTCTTCCTCCATAATTCTCATCATCACAACCTCAACAAACCTGCAAAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.49

Weight (kDa)

6.28

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71910 AT1G71910
fragaria_vesca	FvH4_4g19940
prunus_persica	Prupe.8G056300_v2.0.a1
pyrus_communis	pycom05g03380
rosa_chinensis	RchiOBHm_Chr6g0272051
rosa_laevigata	RLG00000013704
rosa_multiflora	Rmu_sc0005786.1_g000006 Rmu_sc0013301.1_g000002
rosa_roxburghii	Rroxscaffold_7G00196620
rosa_rugosa	Rorug06G0065400
rosa_samantha	Rh6AG182700 Rh6BG184500 Rh6CG183800 Rh6DG175400
rosa_wichuraiana	Rw6G015720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccII	CGCG	1 cut(s)	341
AciI	CCGC	2 cut(s)	79, 96
AcoI	YGGCCR	2 cut(s)	3, 80
AfaI	GTAC	3 cut(s)	33, 46, 316
AfiI	CCNNNNNNNGG	1 cut(s)	334
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	4 cut(s)	146, 187, 280, 358
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	2 cut(s)	21, 364
AluI	AGCT	2 cut(s)	21, 364
AoxI	GGCC	2 cut(s)	3, 80
ApeKI	GCWGC	3 cut(s)	92, 247, 299
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	3 cut(s)	104, 234, 286
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	330
BciVI	GTATCC	1 cut(s)	210
BclI	TGATCA	1 cut(s)	118
BfaI	CTAG	2 cut(s)	51, 303
BfuAI	ACCTGC	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	5 cut(s)	80, 93, 96, 248, 300
BlsI	GCNGC	5 cut(s)	81, 94, 97, 249, 301
BmcAI	AGTACT	2 cut(s)	46, 316
Bme1390I	CCNGG	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	3 cut(s)	104, 234, 286
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	5, 82
BsiSI	CCGG	3 cut(s)	89, 203, 237
BslI	CCNNNNNNNGG	1 cut(s)	334
BsnI	GGCC	2 cut(s)	5, 82
Bsp143I	GATC	2 cut(s)	118, 148
Bsp68I	TCGCGA	1 cut(s)	341
BspACI	CCGC	2 cut(s)	79, 96
BspANI	GGCC	2 cut(s)	5, 82
BspFNI	CGCG	1 cut(s)	341
BspMI	ACCTGC	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	118, 148
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	31, 227, 417
BstBAI	YACGTR	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	341
BstKTI	GATC	2 cut(s)	121, 151
BstMBI	GATC	2 cut(s)	118, 148
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	104, 234, 286
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	5, 82
BtsCI	GGATG	1 cut(s)	57
BtuMI	TCGCGA	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	32, 45, 315
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	5 cut(s)	5, 21, 82, 95, 364
CviKI_1	RGCY	5 cut(s)	5, 21, 82, 95, 364
CviQI	GTAC	3 cut(s)	32, 45, 315
DpnI	GATC	2 cut(s)	120, 150
DpnII	GATC	2 cut(s)	118, 148
EaeI	YGGCCR	2 cut(s)	3, 80
EcoRII	CCWGG	1 cut(s)	328
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	170, 175, 378
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	80, 93, 96, 248, 300
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	5 cut(s)	80, 93, 96, 248, 300
FspBI	CTAG	2 cut(s)	51, 303
GluI	GCNGC	5 cut(s)	80, 93, 96, 248, 300
HaeIII	GGCC	2 cut(s)	5, 82
HapII	CCGG	3 cut(s)	89, 203, 237
Hin1II	CATG	1 cut(s)	172
HpaII	CCGG	3 cut(s)	89, 203, 237
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	123, 220
Hpy188III	TCNNGA	4 cut(s)	146, 152, 340, 355
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	3 cut(s)	31, 227, 417
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	250, 410
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	118, 148
LpnPI	CCDG	7 cut(s)	102, 137, 216, 239, 250, 315, 342
Lsp1109I	GCAGC	3 cut(s)	104, 234, 286
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	51, 303
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	53, 227
MalI	GATC	2 cut(s)	120, 150
MboI	GATC	2 cut(s)	118, 148
MboII	GAAGA	2 cut(s)	169, 361
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	194, 379
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	7 cut(s)	78, 81, 97, 172, 184, 383, 407
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	89, 203, 237
MspR9I	CCNGG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	341
NdeII	GATC	2 cut(s)	118, 148
NlaIII	CATG	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	341
NspI	RCATGY	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	81, 94, 97, 249, 301
Ppu21I	YACGTR	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	3 cut(s)	33, 46, 316
RsaNI	GTAC	3 cut(s)	32, 45, 315
SatI	GCNGC	5 cut(s)	80, 93, 96, 248, 300
Sau3AI	GATC	2 cut(s)	118, 148
ScaI	AGTACT	2 cut(s)	46, 316
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	8 cut(s)	23, 212, 234, 268, 334, 366, 399, 409
SfaNI	GCATC	1 cut(s)	234
Sse9I	AATT	2 cut(s)	194, 379
SsiI	CCGC	2 cut(s)	79, 96
SspMI	CTAG	2 cut(s)	51, 303
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	31, 227, 417
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	194, 379
TatI	WGTACW	3 cut(s)	31, 44, 314
TauI	GCSGC	2 cut(s)	82, 98
TseI	GCWGC	3 cut(s)	92, 247, 299
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	2 cut(s)	51, 303
ZrmI	AGTACT	2 cut(s)	46, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.