FvH4_4g19940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015359
Physical Location & Seq
Reverse (-)
23410449 .. 23410922
474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19940.t1

Sequence Viewer

Length: 474 bp
ATGACCACAGAAGATTTCAGCTTCCCCGCAGTACATAAAAGCAGTAGTACTAGAAGCATCGATTTCCCTCCTTTGTGGCGTCCATCTCCTTGCCATGAAGATGAAGAAGATCACTCTACTCCTGTAGAGGAGGATTGTAATCAGAGGAAGAGCTTTGCATGTGTTGAGGGGGTTGATGATGATCAGATCATAGTTGGTATTCTTGATCAGGATGAGAAAATGGACATGCTATGGGAGGATTTCAATGAGGAATTGTATCCGGCAAGGTCAACGACATCGGAGTACGTGTCCGGCAACATGCTGCAACTGGGTTGTGTAGGTCTTGGTGCTTTCAACTTGTCCAAATCTAATGCTGCTACATCTGGTAGTGCTATTACAAACCCAGGTATGGTCCTAATCGTCAGAGTCTTGAAAAGGCTGTTCTTCCTCCACAACTCTCATCATCACAACCTCAACAAACCTGCAAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.63

Weight (kDa)

5.02

Isoelectric Point (pI)

61.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71910 AT1G71910
fragaria_vesca FvH4_4g19940
prunus_persica Prupe.8G056300_v2.0.a1
pyrus_communis pycom05g03380
rosa_chinensis RchiOBHm_Chr6g0272051
rosa_laevigata RLG00000013704
rosa_multiflora Rmu_sc0005786.1_g000006 Rmu_sc0013301.1_g000002
rosa_roxburghii Rroxscaffold_7G00196620
rosa_rugosa Rorug06G0065400
rosa_samantha Rh6AG182700 Rh6BG184500 Rh6CG183800 Rh6DG175400
rosa_wichuraiana Rw6G015720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
AciI CCGC 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 79
AfaI GTAC 3 cut(s) 33, 49, 284
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 3 cut(s) 244, 334, 412
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 2 cut(s) 21, 153
AluI AGCT 2 cut(s) 21, 153
ApeKI GCWGC 2 cut(s) 301, 353
AspS9I GGNCC 1 cut(s) 391
AvaII GGWCC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 288, 340
BccI CCATC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 384
BciVI GTATCC 1 cut(s) 267
BclI TGATCA 2 cut(s) 181, 205
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 469
BfuI GTATCC 1 cut(s) 267
BisI GCNGC 2 cut(s) 302, 354
BlsI GCNGC 2 cut(s) 303, 355
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 1 cut(s) 66
BmuI ACTGGG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 2 cut(s) 138, 180
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 312
Bse8I GATNNNNATC 2 cut(s) 138, 180
BseBI CCWGG 1 cut(s) 384
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 2 cut(s) 138, 180
BseLI CCNNNNNNNGG 1 cut(s) 388
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 288, 340
BshVI ATCGAT 1 cut(s) 60
BsiSI CCGG 2 cut(s) 260, 291
BslI CCNNNNNNNGG 1 cut(s) 388
Bsp143I GATC 4 cut(s) 109, 181, 186, 205
BspACI CCGC 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 469
BspQI GCTCTTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 4 cut(s) 109, 181, 186, 205
BssNI GRCGYC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 286
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 4 cut(s) 112, 184, 189, 208
BstMBI GATC 4 cut(s) 109, 181, 186, 205
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 3 cut(s) 162, 229, 301
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 288, 340
Bsu15I ATCGAT 1 cut(s) 60
BsuI GTATCC 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 391
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 32, 48, 283
CviAII CATG 4 cut(s) 95, 159, 226, 298
CviJI RGCY 3 cut(s) 21, 153, 418
CviKI_1 RGCY 3 cut(s) 21, 153, 418
CviQI GTAC 3 cut(s) 32, 48, 283
DpnI GATC 4 cut(s) 111, 183, 188, 207
DpnII GATC 4 cut(s) 109, 181, 186, 205
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 382
FaeI CATG 4 cut(s) 98, 162, 229, 301
FaiI YATR 8 cut(s) 36, 96, 160, 191, 227, 232, 299, 389
FatI CATG 4 cut(s) 94, 158, 225, 297
FauI CCCGC 1 cut(s) 34
FbaI TGATCA 2 cut(s) 181, 205
Fnu4HI GCNGC 2 cut(s) 302, 354
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 302, 354
FspBI CTAG 1 cut(s) 51
GluI GCNGC 2 cut(s) 302, 354
HapII CCGG 2 cut(s) 260, 291
HgaI GACGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 79
Hin1II CATG 4 cut(s) 98, 162, 229, 301
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HinfI GANTC 1 cut(s) 405
HpaII CCGG 2 cut(s) 260, 291
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 4 cut(s) 144, 186, 280, 404
Hpy188III TCNNGA 3 cut(s) 203, 209, 409
Hpy8I GTNNAC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 158, 304, 464
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 79
Hsp92II CATG 4 cut(s) 98, 162, 229, 301
Ksp22I TGATCA 2 cut(s) 181, 205
Kzo9I GATC 4 cut(s) 109, 181, 186, 205
LguI GCTCTTC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 135, 194, 273, 293, 304, 348, 369, 396
Lsp1109I GCAGC 2 cut(s) 288, 340
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 285
MalI GATC 4 cut(s) 111, 183, 188, 207
MboI GATC 4 cut(s) 109, 181, 186, 205
MboII GAAGA 6 cut(s) 23, 110, 116, 119, 160, 415
MluCI AATT 1 cut(s) 251
MlyI GAGTC 1 cut(s) 414
MnlI CCTC 9 cut(s) 78, 121, 124, 138, 160, 229, 241, 437, 461
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 2 cut(s) 260, 291
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
NdeII GATC 4 cut(s) 109, 181, 186, 205
NlaIII CATG 4 cut(s) 98, 162, 229, 301
NspI RCATGY 3 cut(s) 162, 229, 301
PciSI GCTCTTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 303, 355
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspPI GGNCC 1 cut(s) 391
RsaI GTAC 3 cut(s) 33, 49, 284
RsaNI GTAC 3 cut(s) 32, 48, 283
RseI CAYNNNNRTG 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 143
SatI GCNGC 2 cut(s) 302, 354
Sau3AI GATC 4 cut(s) 109, 181, 186, 205
Sau96I GGNCC 1 cut(s) 391
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 1 cut(s) 414
ScrFI CCNGG 1 cut(s) 384
SetI ASST 8 cut(s) 23, 155, 269, 288, 322, 388, 453, 463
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 1 cut(s) 251
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 471
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 251
TatI WGTACW 2 cut(s) 31, 47
TseI GCWGC 2 cut(s) 301, 353
TspDTI ATGAA 2 cut(s) 111, 117
VpaK11BI GGWCC 1 cut(s) 391
XceI RCATGY 3 cut(s) 162, 229, 301
XspI CTAG 1 cut(s) 51
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.