Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Forward (+)

27066948 .. 27069166

Gene Structure 2219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G71920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGTGTGATCAATGTTCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAGAGTCAAATCTTCGAAAGTCTCGAGCTTTGAAGAAACCCTTTTGCTCAATCCGGAATAGGGTTTATTGTGCTCAGTCTTCAAGTGCAGCTGTAGACGAATCCAAGAATATAACTATGGGAGACTCTTTTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTGAGGTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAGGCAACATTAGGCAATATGAAATTCCCTTACGTTTATCCTGATCCACAAAGTCGTAGACTTCGTGATGCACTGGCTCAAGACTCTGGTTTGGAGTCTGAATACATACTTGTAGGCTGTGGTGCTGACGAACTTATTGATTTGATCATGAGATGCGTGTTAGATCCTGGGGAGAAGATTATAGATTGTCCTCCAACTTTCTCAATGTATGTGTTTGATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGAAACCCCGATTTCAGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACTTCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATTCTAGAAATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGAATCACGCATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGCAAACGAGCTGGTTTAGCCGGGCTTCGAGTTGGATATGGAGCGTTTCCGTTGAGTATAATCGAATACCTGTGGAGAGCAAAGCAACCATACAATGTCTCTGTTGCAGGGGAAGTAGCTGCTTTAGCAGCACTCTCAAACGGGAAATACTTAGAAGATGTGAGAGACGCCTTGGTACGGGAAAGAGAGAGACTGTTCGGGCTATTAAAAGAAGTTCCTTTCTTGAATCCATATCCGAGCTATTCGAATTTCATTCTCTGTGAGGTTACATCTGGAATGGATGCAAAGAAGCTGAAAGAGGATTTGGCGAAAATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAAGGTTATGTTCGAGTTTCTGCTGGAAAGCCTGAACATACTGATGTTCTCATGGAGTGTCTTAAGCAATTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

415

Amino Acids

46.36

Weight (kDa)

5.99

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	90 - 409	4.1e-54	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	542
AccI	GTMKAC	3 cut(s)	144, 373, 597
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	3 cut(s)	536, 601, 811
AclWI	GGATC	2 cut(s)	353, 473
AcsI	RAATTY	3 cut(s)	338, 749, 1066
AcuI	CTGAAG	2 cut(s)	33, 630
AcyI	GRCGYC	1 cut(s)	987
AfaI	GTAC	1 cut(s)	996
AfiI	CCNNNNNNNGG	2 cut(s)	109, 996
AflII	CTTAAG	1 cut(s)	1232
AgsI	TTSAA	6 cut(s)	82, 132, 592, 700, 764, 1045
AjnI	CCWGG	1 cut(s)	481
AjuI	GAANNNNNNNTTGG	4 cut(s)	626, 658, 1106, 1138
AluBI	AGCT	9 cut(s)	77, 140, 588, 740, 830, 938, 1059, 1111, 1168
AluI	AGCT	9 cut(s)	77, 140, 588, 740, 830, 938, 1059, 1111, 1168
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	6 cut(s)	75, 165, 190, 922, 978, 1003
AlwI	GGATC	2 cut(s)	353, 473
Ama87I	CYCGRG	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	102
ApeKI	GCWGC	4 cut(s)	137, 206, 938, 947
ApoI	RAATTY	3 cut(s)	338, 749, 1066
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	841
AsuHPI	GGTGA	1 cut(s)	793
AsuII	TTCGAA	2 cut(s)	64, 1064
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	149, 193, 925, 959
BccI	CCATC	3 cut(s)	37, 662, 1135
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	2 cut(s)	9, 459
BcnI	CCSGG	1 cut(s)	841
BcoDI	GTCTC	6 cut(s)	75, 165, 190, 922, 978, 1003
BfaI	CTAG	3 cut(s)	623, 707, 731
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	1232
BfuAI	ACCTGC	1 cut(s)	542
BisI	GCNGC	5 cut(s)	138, 207, 537, 939, 948
BlsI	GCNGC	5 cut(s)	139, 208, 538, 940, 949
Bme1390I	CCNGG	2 cut(s)	483, 841
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	2 cut(s)	483, 841
BmsI	GCATC	6 cut(s)	274, 373, 458, 523, 612, 1090
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	297
Bpu14I	TTCGAA	2 cut(s)	64, 1064
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	841
BsaHI	GRCGYC	1 cut(s)	987
BsaJI	CCNNGG	2 cut(s)	482, 990
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 996
Bse1I	ACTGG	1 cut(s)	393
Bse21I	CCTNAGG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	482, 990
BseGI	GGATG	1 cut(s)	1105
BseLI	CCNNNNNNNGG	2 cut(s)	109, 996
BseMII	CTCAG	3 cut(s)	137, 255, 768
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	4 cut(s)	149, 193, 925, 959
BsgI	GTGCAG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	103, 840
BslI	CCNNNNNNNGG	2 cut(s)	109, 996
BsmAI	GTCTC	6 cut(s)	75, 165, 190, 922, 978, 1003
BsmBI	CGTCTC	1 cut(s)	978
BsoBI	CYCGRG	1 cut(s)	72
Bsp119I	TTCGAA	2 cut(s)	64, 1064
Bsp1286I	GDGCHC	2 cut(s)	26, 124
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	5 cut(s)	9, 358, 459, 478, 691
BspACI	CCGC	3 cut(s)	536, 601, 811
BspCNI	CTCAG	3 cut(s)	136, 256, 767
BspEI	TCCGGA	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	2 cut(s)	353, 473
BspT104I	TTCGAA	2 cut(s)	64, 1064
BspTI	CTTAAG	1 cut(s)	1232
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	2 cut(s)	482, 990
BssMI	GATC	5 cut(s)	9, 358, 459, 478, 691
BssNI	GRCGYC	1 cut(s)	987
BssT1I	CCWWGG	1 cut(s)	990
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	1014, 1160
BstACI	GRCGYC	1 cut(s)	987
BstAFI	CTTAAG	1 cut(s)	1232
BstBI	TTCGAA	2 cut(s)	64, 1064
BstDEI	CTNAG	4 cut(s)	123, 264, 754, 970
BstF5I	GGATG	1 cut(s)	1105
BstKTI	GATC	5 cut(s)	12, 361, 462, 481, 694
BstMAI	GTCTC	6 cut(s)	75, 165, 190, 922, 978, 1003
BstMBI	GATC	5 cut(s)	9, 358, 459, 478, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	819, 836, 944, 947
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	481, 839
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	149, 193, 925, 959
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
Bsu36I	CCTNAGG	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	1 cut(s)	1105
BtsIMutI	CAGTG	1 cut(s)	386
BveI	ACCTGC	1 cut(s)	542
CciI	TCATGA	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	305
CseI	GACGC	1 cut(s)	995
Csp6I	GTAC	1 cut(s)	995
CviAII	CATG	3 cut(s)	463, 772, 1222
CviQI	GTAC	1 cut(s)	995
DdeI	CTNAG	4 cut(s)	123, 264, 754, 970
DpnI	GATC	5 cut(s)	11, 360, 461, 480, 693
DpnII	GATC	5 cut(s)	9, 358, 459, 478, 691
Eco130I	CCWWGG	1 cut(s)	990
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	2 cut(s)	33, 630
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	990
EcoT22I	ATGCAT	1 cut(s)	641
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	990
Esp3I	CGTCTC	1 cut(s)	978
FaeI	CATG	3 cut(s)	466, 775, 1225
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	3 cut(s)	462, 771, 1221
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	2 cut(s)	9, 459
FblI	GTMKAC	3 cut(s)	144, 373, 597
Fnu4HI	GCNGC	5 cut(s)	138, 207, 537, 939, 948
FokI	GGATG	1 cut(s)	1112
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	138, 207, 537, 939, 948
FspBI	CTAG	3 cut(s)	623, 707, 731
GluI	GCNGC	5 cut(s)	138, 207, 537, 939, 948
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	2 cut(s)	103, 840
HgaI	GACGC	1 cut(s)	995
Hin1I	GRCGYC	1 cut(s)	987
Hin1II	CATG	3 cut(s)	466, 775, 1225
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	8 cut(s)	53, 149, 173, 398, 410, 703, 764, 1045
HpaII	CCGG	2 cut(s)	103, 840
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	4 cut(s)	145, 188, 374, 598
Hpy188I	TCNGA	3 cut(s)	52, 415, 1056
Hpy8I	GTNNAC	4 cut(s)	145, 188, 374, 598
HpyCH4III	ACNGT	2 cut(s)	1014, 1160
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	5 cut(s)	137, 386, 639, 926, 1103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	819, 836, 944, 947
HpyF3I	CTNAG	4 cut(s)	123, 264, 754, 970
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	987
Hsp92II	CATG	3 cut(s)	466, 775, 1225
Kpn2I	TCCGGA	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	9, 459
Kzo9I	GATC	5 cut(s)	9, 358, 459, 478, 691
LmnI	GCTCC	2 cut(s)	548, 860
Lsp1109I	GCAGC	4 cut(s)	149, 193, 925, 959
LweI	GCATC	6 cut(s)	274, 373, 458, 523, 612, 1090
MaeI	CTAG	3 cut(s)	623, 707, 731
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	1084
MalI	GATC	5 cut(s)	11, 360, 461, 480, 693
MboI	GATC	5 cut(s)	9, 358, 459, 478, 691
MboII	GAAGA	9 cut(s)	39, 53, 94, 120, 267, 502, 712, 796, 986
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	2 cut(s)	26, 124
MluCI	AATT	7 cut(s)	200, 219, 248, 338, 749, 1066, 1238
MlyI	GAGTC	4 cut(s)	62, 167, 392, 419
MmeI	TCCRAC	2 cut(s)	533, 832
MnlI	CCTC	9 cut(s)	226, 259, 310, 318, 321, 516, 679, 1075, 1111
Mph1103I	ATGCAT	1 cut(s)	641
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	4 cut(s)	561, 1025, 1170, 1233
MslI	CAYNNNNRTG	1 cut(s)	1212
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	1232
MspI	CCGG	2 cut(s)	103, 840
MspR9I	CCNGG	2 cut(s)	483, 841
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	819, 836, 944, 947
NciI	CCSGG	1 cut(s)	841
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	5 cut(s)	9, 358, 459, 478, 691
NlaIII	CATG	3 cut(s)	466, 775, 1225
NsiI	ATGCAT	1 cut(s)	641
NspV	TTCGAA	2 cut(s)	64, 1064
PaeR7I	CTCGAG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	462
PaqCI	CACCTGC	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 376
PfeI	GAWTC	4 cut(s)	149, 703, 764, 1045
PkrI	GCNGC	5 cut(s)	139, 208, 538, 940, 949
PleI	GAGTC	4 cut(s)	61, 167, 392, 418
PpsI	GAGTC	4 cut(s)	61, 167, 392, 418
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	1 cut(s)	996
RsaNI	GTAC	1 cut(s)	995
RseI	CAYNNNNRTG	1 cut(s)	1212
SaqAI	TTAA	4 cut(s)	561, 1025, 1170, 1233
SatI	GCNGC	5 cut(s)	138, 207, 537, 939, 948
Sau3AI	GATC	5 cut(s)	9, 358, 459, 478, 691
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	4 cut(s)	62, 167, 392, 419
ScrFI	CCNGG	2 cut(s)	483, 841
SduI	GDGCHC	2 cut(s)	26, 124
SfaNI	GCATC	6 cut(s)	274, 373, 458, 523, 612, 1090
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	72
SfuI	TTCGAA	2 cut(s)	64, 1064
SinI	GGWCC	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	1212
SmlI	CTYRAG	3 cut(s)	72, 393, 1232
SmoI	CTYRAG	3 cut(s)	72, 393, 1232
Sse9I	AATT	7 cut(s)	200, 219, 248, 338, 749, 1066, 1238
SsiI	CCGC	3 cut(s)	536, 601, 811
SspMI	CTAG	3 cut(s)	623, 707, 731
StyD4I	CCNGG	2 cut(s)	481, 839
StyI	CCWWGG	1 cut(s)	990
TaaI	ACNGT	2 cut(s)	1014, 1160
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	7 cut(s)	64, 73, 747, 847, 882, 1064, 1183
TasI	AATT	7 cut(s)	200, 219, 248, 338, 749, 1066, 1238
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	4 cut(s)	149, 703, 764, 1045
Tru1I	TTAA	4 cut(s)	561, 1025, 1170, 1233
Tru9I	TTAA	4 cut(s)	561, 1025, 1170, 1233
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	4 cut(s)	137, 206, 938, 947
TspDTI	ATGAA	6 cut(s)	32, 350, 750, 788, 807, 1060
TspGWI	ACGGA	2 cut(s)	173, 858
TspRI	CASTG	1 cut(s)	393
Vha464I	CTTAAG	1 cut(s)	1232
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	3 cut(s)	338, 749, 1066
XbaI	TCTAGA	2 cut(s)	706, 730
XhoI	CTCGAG	1 cut(s)	72
XmiI	GTMKAC	3 cut(s)	144, 373, 597
XspI	CTAG	3 cut(s)	623, 707, 731
Zsp2I	ATGCAT	1 cut(s)	641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.